Wall clock time and date at job start Mon Mar 30 2020 17:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 115.54951 * 2 1 4 4 C 1.53002 * 117.49888 * 145.67026 * 2 1 3 5 5 C 1.53000 * 117.50107 * 214.32788 * 2 1 3 6 6 H 1.08999 * 117.49959 * 144.99502 * 5 2 1 7 7 C 1.50701 * 117.49727 * 0.02562 * 5 2 1 8 8 O 1.21288 * 120.00171 * 0.02562 * 7 5 2 9 9 N 1.34774 * 120.00330 * 179.97438 * 7 5 2 10 10 C 1.46501 * 120.00405 * 180.02562 * 9 7 5 11 11 C 1.52997 * 109.47143 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47020 * 179.97438 * 11 10 9 13 13 C 1.36940 * 120.00219 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99690 * 0.02562 * 13 12 11 15 15 C 1.38804 * 120.00532 * 180.02562 * 13 12 11 16 16 N 1.31623 * 119.99737 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00409 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.46897 * 59.99934 * 17 15 13 19 19 H 1.48499 * 109.47259 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46920 * 300.00156 * 17 15 13 21 21 H 1.08997 * 109.47260 * 205.57907 * 1 2 3 22 22 H 1.09000 * 109.47658 * 325.58288 * 1 2 3 23 23 H 1.09001 * 109.47132 * 85.58115 * 1 2 3 24 24 H 1.09000 * 117.49996 * 215.00804 * 4 2 1 25 25 H 1.08999 * 117.49664 * 0.02562 * 4 2 1 26 26 H 0.97005 * 119.99431 * 0.02562 * 9 7 5 27 27 H 1.09001 * 109.46610 * 300.00061 * 10 9 7 28 28 H 1.08998 * 109.46855 * 59.99765 * 10 9 7 29 29 H 1.08994 * 109.47424 * 300.00038 * 11 10 9 30 30 H 1.08997 * 109.47139 * 59.99680 * 11 10 9 31 31 H 0.96996 * 120.00459 * 359.97438 * 12 11 10 32 32 H 0.97005 * 119.99903 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1207 0.7654 5 6 2.2365 -1.1207 -0.7653 6 1 3.1713 -0.8746 -1.2689 7 6 1.3720 -2.1398 -1.4619 8 8 0.1638 -2.0520 -1.4031 9 7 1.9415 -3.1483 -2.1512 10 6 1.1012 -4.1387 -2.8289 11 6 1.9903 -5.1663 -3.5320 12 7 1.1499 -6.1570 -4.2091 13 6 1.7286 -7.1811 -4.9103 14 1 2.8045 -7.2587 -4.9637 15 6 0.9325 -8.1195 -5.5524 16 7 -0.3788 -8.0248 -5.4877 17 14 1.7218 -9.5169 -6.5082 18 1 2.5653 -10.3277 -5.5937 19 1 0.6621 -10.3751 -7.0962 20 1 2.5656 -8.9585 -7.5951 21 1 -0.3633 -0.9269 0.4437 22 1 -0.3634 0.8477 0.5808 23 1 -0.3633 0.0792 -1.0246 24 1 3.1713 -0.8747 1.2690 25 1 1.6112 -1.8583 1.2685 26 1 2.9079 -3.2183 -2.1986 27 1 0.4715 -4.6432 -2.0961 28 1 0.4723 -3.6385 -3.5654 29 1 2.6196 -4.6615 -4.2648 30 1 2.6195 -5.6665 -2.7958 31 1 0.1837 -6.0877 -4.1609 32 1 -0.9352 -8.6803 -5.9367 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122959386.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:05:55 Heat of formation + Delta-G solvation = -30.699923 kcal Electronic energy + Delta-G solvation = -13574.634789 eV Core-core repulsion = 11149.157521 eV Total energy + Delta-G solvation = -2425.477269 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.11121 -38.01124 -36.97607 -35.46743 -33.17240 -30.10083 -29.04228 -26.10282 -24.49698 -23.01149 -21.97987 -20.83312 -19.30052 -18.12969 -16.84093 -16.71344 -16.50834 -16.08304 -15.29231 -15.06198 -15.01695 -14.52314 -13.99085 -13.55470 -13.20338 -13.06505 -13.02568 -12.63657 -12.54330 -12.34806 -12.13073 -11.87019 -11.17247 -11.02838 -10.98718 -10.59049 -10.11918 -9.08510 -7.97790 -5.29828 1.48047 1.51630 1.52044 1.58208 2.09477 2.57597 2.88114 3.36301 3.65722 3.81770 3.95468 4.00644 4.14516 4.19226 4.25699 4.50345 4.55853 4.82880 4.92278 4.98125 5.00875 5.07338 5.10968 5.19982 5.38850 5.47598 5.58093 6.22647 6.57579 7.27525 7.28892 8.00221 8.23575 9.25755 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.088960 B = 0.004679 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 314.671100 B = 5982.115654 C = 6201.585720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.123 4.123 3 H 0.140 0.860 4 C -0.138 4.138 5 C -0.197 4.197 6 H 0.154 0.846 7 C 0.530 3.470 8 O -0.580 6.580 9 N -0.710 5.710 10 C 0.129 3.871 11 C 0.150 3.850 12 N -0.748 5.748 13 C -0.252 4.252 14 H 0.083 0.917 15 C -0.076 4.076 16 N -0.971 5.971 17 Si 0.981 3.019 18 H -0.275 1.275 19 H -0.296 1.296 20 H -0.275 1.275 21 H 0.039 0.961 22 H 0.067 0.933 23 H 0.043 0.957 24 H 0.136 0.864 25 H 0.083 0.917 26 H 0.417 0.583 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.373 0.627 32 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.238 15.407 11.272 21.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.142 4.142 3 H 0.158 0.842 4 C -0.175 4.175 5 C -0.218 4.218 6 H 0.172 0.828 7 C 0.318 3.682 8 O -0.460 6.460 9 N -0.363 5.363 10 C 0.004 3.996 11 C 0.023 3.977 12 N -0.392 5.392 13 C -0.384 4.384 14 H 0.101 0.899 15 C -0.268 4.268 16 N -0.622 5.622 17 Si 0.809 3.191 18 H -0.200 1.200 19 H -0.222 1.222 20 H -0.201 1.201 21 H 0.058 0.942 22 H 0.086 0.914 23 H 0.062 0.938 24 H 0.154 0.846 25 H 0.101 0.899 26 H 0.253 0.747 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.205 0.795 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.532 15.355 11.236 20.852 hybrid contribution -0.080 -1.097 -0.809 1.365 sum 8.452 14.258 10.427 19.582 Atomic orbital electron populations 1.21295 0.93448 1.00926 1.01178 1.22507 0.95283 0.94927 1.01434 0.84234 1.23194 1.03893 1.00719 0.89712 1.22367 1.02559 1.00308 0.96588 0.82801 1.20470 0.88178 0.81559 0.77986 1.90704 1.16723 1.75776 1.62789 1.45755 1.11138 1.26900 1.52459 1.21110 0.93590 0.89438 0.95471 1.20840 0.93042 0.89276 0.94568 1.42434 1.05483 1.29594 1.61642 1.19633 0.92316 1.02749 1.23663 0.89893 1.25687 0.95912 1.02390 1.02793 1.69840 1.04105 1.38725 1.49485 0.85109 0.76873 0.78630 0.78501 1.20043 1.22232 1.20056 0.94191 0.91399 0.93792 0.84565 0.89851 0.74657 0.93161 0.93114 0.94470 0.94504 0.79505 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.54 8.43 71.98 0.61 -1.93 16 2 C -0.12 -2.10 6.40 -10.79 -0.07 -2.17 16 3 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 4 C -0.14 -2.08 9.89 30.62 0.30 -1.78 16 5 C -0.20 -3.60 6.19 -11.52 -0.07 -3.68 16 6 H 0.15 1.83 8.14 -2.39 -0.02 1.81 16 7 C 0.53 14.99 7.60 87.66 0.67 15.66 16 8 O -0.58 -21.43 13.11 -3.06 -0.04 -21.47 16 9 N -0.71 -19.19 5.56 -463.06 -2.57 -21.76 16 10 C 0.13 4.57 5.79 86.38 0.50 5.07 16 11 C 0.15 5.83 6.37 86.38 0.55 6.38 16 12 N -0.75 -38.77 5.60 -343.47 -1.92 -40.70 16 13 C -0.25 -14.11 9.99 84.03 0.84 -13.27 16 14 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 15 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 16 N -0.97 -60.43 13.06 21.65 0.28 -60.14 16 17 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H 0.04 1.09 7.01 -2.39 -0.02 1.07 16 22 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.04 1.20 7.26 -2.39 -0.02 1.19 16 24 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.08 1.56 8.05 -2.39 -0.02 1.54 16 26 H 0.42 8.31 8.47 -92.70 -0.79 7.52 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.37 20.93 7.67 -92.71 -0.71 20.22 16 32 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 Total: -1.00 -70.76 274.09 1.19 -69.57 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -0.38 Total: 26.23 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 3.79 Total: 0.38 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -4.21 Total: -122.60 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.04 Total: -21.47 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -70.76 1.19 -69.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122959386.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.870 kcal (2) G-P(sol) polarization free energy of solvation -70.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds