Wall clock time and date at job start Mon Mar 30 2020 17:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47260 * 2 1 4 4 C 1.50702 * 109.47370 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99856 * 0.02562 * 4 3 2 6 6 O 1.34230 * 120.00293 * 179.97438 * 4 3 2 7 7 C 1.45202 * 117.00174 * 180.02562 * 6 4 3 8 8 H 1.09005 * 109.46556 * 329.99960 * 7 6 4 9 9 C 1.50699 * 109.46854 * 210.00166 * 7 6 4 10 10 H 1.08002 * 120.00511 * 0.02562 * 9 7 6 11 11 C 1.37884 * 119.99783 * 179.97438 * 9 7 6 12 12 N 1.31514 * 119.99573 * 180.27665 * 11 9 7 13 13 Si 1.86800 * 119.99781 * 359.97438 * 11 9 7 14 14 H 1.48501 * 109.46758 * 89.99934 * 13 11 9 15 15 H 1.48499 * 109.47026 * 209.99782 * 13 11 9 16 16 H 1.48496 * 109.47474 * 329.99818 * 13 11 9 17 17 C 1.52993 * 109.47241 * 90.00021 * 7 6 4 18 18 C 1.53002 * 117.49816 * 8.74611 * 17 7 6 19 19 C 1.52997 * 117.50033 * 300.08935 * 17 7 6 20 20 H 1.08999 * 109.46781 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47008 * 299.99740 * 1 2 3 22 22 H 1.08993 * 109.46839 * 60.00266 * 1 2 3 23 23 H 1.09001 * 109.47272 * 239.99552 * 2 1 3 24 24 H 1.09004 * 109.46957 * 120.00174 * 2 1 3 25 25 H 1.09004 * 109.47717 * 59.99960 * 3 2 1 26 26 H 1.09004 * 109.47278 * 299.99977 * 3 2 1 27 27 H 0.97004 * 119.99485 * 179.72881 * 12 11 9 28 28 H 1.09005 * 115.55203 * 154.41640 * 17 7 6 29 29 H 1.08995 * 117.49810 * 0.02562 * 18 17 7 30 30 H 1.09005 * 117.49503 * 145.01979 * 18 17 7 31 31 H 1.09006 * 117.50311 * 214.97932 * 19 17 7 32 32 H 1.09007 * 117.50018 * 359.97171 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1512 0.3960 0.0006 6 8 4.2182 2.6049 0.0002 7 6 5.6682 2.5289 0.0003 8 1 5.9844 1.6212 0.5145 9 6 6.2342 3.7316 0.7103 10 1 5.5706 4.4783 1.1209 11 6 7.5994 3.8784 0.8368 12 7 8.0931 4.9252 1.4612 13 14 8.7472 2.5859 0.1286 14 1 9.0886 2.9414 -1.2722 15 1 9.9887 2.5278 0.9412 16 1 8.0767 1.2612 0.1537 17 6 6.1776 2.5017 -1.4421 18 6 5.1607 2.7612 -2.5554 19 6 5.7108 1.3500 -2.3346 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 1.6767 1.9564 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 9.0534 5.0265 1.5535 28 1 7.1915 2.8737 -1.5898 29 1 4.1289 2.9517 -2.2602 30 1 5.5057 3.3037 -3.4357 31 1 6.4174 0.9645 -3.0696 32 1 5.0411 0.6113 -1.8939 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123368696.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:06:07 Heat of formation + Delta-G solvation = -73.593727 kcal Electronic energy + Delta-G solvation = -14548.745755 eV Core-core repulsion = 12089.115720 eV Total energy + Delta-G solvation = -2459.630035 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.99292 -36.99149 -35.02697 -34.27674 -32.74612 -29.10630 -27.76556 -23.10806 -22.22900 -21.72284 -20.51141 -19.30059 -17.18349 -16.63368 -16.27053 -15.64629 -15.22541 -14.42850 -13.79234 -13.42615 -13.10049 -12.73253 -12.20026 -12.02248 -11.85252 -11.63143 -11.29007 -11.17214 -10.94551 -10.77135 -10.69489 -10.21116 -10.00055 -9.78226 -9.61390 -9.29977 -8.80556 -8.67726 -6.23278 -4.25408 2.84465 3.17736 3.30307 3.37412 3.51681 4.27053 4.53543 4.90136 5.01612 5.05315 5.17630 5.50370 5.51188 5.55750 5.67749 5.68301 5.70353 5.80140 5.97029 6.14006 6.19783 6.30204 6.31336 6.50065 6.73229 6.79168 6.86384 7.35043 7.52308 8.23796 8.60859 8.84295 9.33912 10.88503 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.042500 B = 0.009092 C = 0.008469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.671498 B = 3078.930195 C = 3305.196883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.117 4.117 4 C 0.449 3.551 5 O -0.520 6.520 6 O -0.340 6.340 7 C 0.224 3.776 8 H 0.051 0.949 9 C -0.520 4.520 10 H 0.088 0.912 11 C 0.080 3.920 12 N -0.887 5.887 13 Si 0.873 3.127 14 H -0.274 1.274 15 H -0.288 1.288 16 H -0.256 1.256 17 C -0.164 4.164 18 C -0.170 4.170 19 C -0.207 4.207 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.269 0.731 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.647 -7.207 -5.106 13.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.155 4.155 4 C 0.293 3.707 5 O -0.411 6.411 6 O -0.256 6.256 7 C 0.170 3.830 8 H 0.069 0.931 9 C -0.557 4.557 10 H 0.106 0.894 11 C -0.123 4.123 12 N -0.524 5.524 13 Si 0.701 3.299 14 H -0.200 1.200 15 H -0.215 1.215 16 H -0.180 1.180 17 C -0.182 4.182 18 C -0.207 4.207 19 C -0.244 4.244 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.079 0.921 28 H 0.125 0.875 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.251 -7.382 -5.031 13.598 hybrid contribution 0.955 -0.520 -0.471 1.185 sum -9.297 -7.902 -5.502 13.384 Atomic orbital electron populations 1.21775 0.95352 1.01798 1.01911 1.21345 0.95325 0.94755 1.03647 1.21415 0.88940 0.99742 1.05366 1.23615 0.91689 0.82929 0.72496 1.90569 1.70783 1.33511 1.46204 1.86525 1.24797 1.32569 1.81672 1.20443 0.71970 0.99784 0.90762 0.93104 1.20730 0.92517 1.06474 1.36006 0.89429 1.24724 0.97471 0.95405 0.94684 1.69843 1.13238 1.27868 1.41469 0.87053 0.80682 0.83374 0.78810 1.20041 1.21475 1.18045 1.23422 0.99506 1.01233 0.94077 1.22751 0.99519 0.98443 1.00013 1.23262 1.04831 0.92277 1.03995 0.92481 0.92555 0.92622 0.91225 0.91118 0.88109 0.88314 0.92071 0.87480 0.88913 0.89668 0.89992 0.87995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -1.00 16 2 C -0.11 -1.36 5.22 -26.74 -0.14 -1.50 16 3 C -0.12 -1.58 5.81 -27.89 -0.16 -1.74 16 4 C 0.45 8.66 6.91 36.01 0.25 8.91 16 5 O -0.52 -11.18 13.03 -18.75 -0.24 -11.42 16 6 O -0.34 -7.67 8.38 -39.26 -0.33 -8.00 16 7 C 0.22 5.67 2.00 -27.89 -0.06 5.61 16 8 H 0.05 1.37 6.21 -51.93 -0.32 1.05 16 9 C -0.52 -14.94 9.48 -34.44 -0.33 -15.26 16 10 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 11 C 0.08 2.32 5.44 -17.82 -0.10 2.22 16 12 N -0.89 -26.71 13.96 55.43 0.77 -25.93 16 13 Si 0.87 21.68 24.48 -169.99 -4.16 17.52 16 14 H -0.27 -6.54 6.72 56.52 0.38 -6.16 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 17 C -0.16 -3.79 4.45 -90.62 -0.40 -4.19 16 18 C -0.17 -3.31 9.80 -26.70 -0.26 -3.57 16 19 C -0.21 -4.11 9.85 -26.70 -0.26 -4.37 16 20 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 21 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 24 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 25 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.11 2.58 4.40 -51.93 -0.23 2.35 16 29 H 0.09 1.75 6.91 -51.93 -0.36 1.39 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.10 2.08 5.37 -51.93 -0.28 1.80 16 LS Contribution 261.53 15.07 3.94 3.94 Total: -1.00 -31.05 261.53 -5.71 -36.77 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -4.60 Total: 2.01 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -1.09 Total: -14.89 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.77 Total: -25.93 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.57 Total: -19.42 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.16 Total: 17.52 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.05 -5.71 -36.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123368696.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.827 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds