Wall clock time and date at job start Mon Mar 30 2020 17:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46524 * 2 1 4 4 C 1.50695 * 109.47159 * 119.99846 * 2 1 3 5 5 O 1.20821 * 120.00222 * 240.00005 * 4 2 1 6 6 O 1.34232 * 120.00249 * 60.00036 * 4 2 1 7 7 C 1.45200 * 117.00499 * 179.97438 * 6 4 2 8 8 H 1.09000 * 109.46293 * 30.00576 * 7 6 4 9 9 C 1.50696 * 109.46946 * 150.00202 * 7 6 4 10 10 H 1.07999 * 120.00202 * 0.02562 * 9 7 6 11 11 C 1.37884 * 119.99746 * 180.02562 * 9 7 6 12 12 N 1.31514 * 119.99573 * 0.27650 * 11 9 7 13 13 Si 1.86800 * 119.99781 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47364 * 359.97438 * 13 11 9 15 15 H 1.48508 * 109.46883 * 120.00040 * 13 11 9 16 16 H 1.48497 * 109.46870 * 239.99850 * 13 11 9 17 17 C 1.53001 * 109.47141 * 270.00686 * 7 6 4 18 18 C 1.52998 * 117.49883 * 128.74740 * 17 7 6 19 19 C 1.52992 * 117.50066 * 60.08595 * 17 7 6 20 20 H 1.09001 * 109.47000 * 299.99483 * 1 2 3 21 21 H 1.08995 * 109.47473 * 60.00367 * 1 2 3 22 22 H 1.09008 * 109.46744 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46676 * 240.00084 * 2 1 3 24 24 H 1.09004 * 109.47062 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47364 * 299.99697 * 3 2 1 26 26 H 1.08997 * 109.47624 * 60.00113 * 3 2 1 27 27 H 0.97001 * 120.00651 * 359.71956 * 12 11 9 28 28 H 1.08999 * 115.54378 * 274.40712 * 17 7 6 29 29 H 1.09003 * 117.49932 * 359.97438 * 18 17 7 30 30 H 1.08994 * 117.50378 * 145.01599 * 18 17 7 31 31 H 1.09000 * 117.50086 * 214.97634 * 19 17 7 32 32 H 1.09002 * 117.50188 * 359.97438 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.7270 -0.1232 2.0257 6 8 1.7081 -1.9955 1.4429 7 6 2.2278 -2.6159 2.6485 8 1 2.3418 -1.8602 3.4257 9 6 1.2697 -3.6797 3.1190 10 1 0.3613 -3.8707 2.5669 11 6 1.5528 -4.4091 4.2543 12 7 2.6563 -4.1727 4.9295 13 14 0.3648 -5.7273 4.8379 14 1 -0.7963 -5.7913 3.9143 15 1 1.0552 -7.0420 4.8579 16 1 -0.1090 -5.3961 6.2057 17 6 3.5878 -3.2501 2.3502 18 6 4.7511 -2.8964 3.2789 19 6 4.7049 -2.3275 1.8586 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8899 27 1 3.2730 -3.4880 4.6267 28 1 3.5561 -4.2619 1.9461 29 1 4.5476 -2.2116 4.1022 30 1 5.4850 -3.6754 3.4854 31 1 5.4085 -2.7324 1.1313 32 1 4.4709 -1.2688 1.7473 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123461400.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:06:16 Heat of formation + Delta-G solvation = -99.119045 kcal Electronic energy + Delta-G solvation = -14720.911631 eV Core-core repulsion = 12260.174736 eV Total energy + Delta-G solvation = -2460.736896 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.62991 -38.82787 -36.93896 -35.56139 -34.82168 -29.65377 -28.05254 -25.71796 -24.66278 -23.48815 -21.72431 -20.93472 -19.26982 -18.75181 -17.33535 -17.17255 -16.14668 -15.62794 -15.44790 -14.73003 -14.56292 -14.50620 -13.84381 -13.34796 -13.20491 -12.99853 -12.74507 -12.64329 -12.48619 -12.14031 -12.06634 -11.92092 -11.61216 -11.49320 -11.27763 -11.07796 -10.67836 -10.47184 -8.68113 -6.49804 1.28174 1.52790 1.62265 1.79714 1.94208 2.54848 2.90917 3.08211 3.68734 3.84109 3.93514 3.98692 4.01044 4.12184 4.25152 4.50744 4.58989 4.71084 4.79650 4.84603 4.86948 4.97642 4.99200 5.11347 5.21395 5.24752 5.30286 5.55947 5.91774 6.13512 6.50038 6.93387 7.33344 8.71514 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.033865 B = 0.010278 C = 0.008400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.623880 B = 2723.649789 C = 3332.399488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 C -0.130 4.130 4 C 0.443 3.557 5 O -0.550 6.550 6 O -0.355 6.355 7 C 0.240 3.760 8 H -0.003 1.003 9 C -0.629 4.629 10 H 0.056 0.944 11 C -0.016 4.016 12 N -0.930 5.930 13 Si 1.128 2.872 14 H -0.271 1.271 15 H -0.273 1.273 16 H -0.278 1.278 17 C -0.161 4.161 18 C -0.155 4.155 19 C -0.179 4.179 20 H 0.048 0.952 21 H 0.107 0.893 22 H 0.056 0.944 23 H 0.127 0.873 24 H 0.053 0.947 25 H 0.104 0.896 26 H 0.048 0.952 27 H 0.280 0.720 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 5.945 -10.379 12.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 C -0.187 4.187 4 C 0.289 3.711 5 O -0.442 6.442 6 O -0.271 6.271 7 C 0.187 3.813 8 H 0.014 0.986 9 C -0.667 4.667 10 H 0.075 0.925 11 C -0.217 4.217 12 N -0.567 5.567 13 Si 0.948 3.052 14 H -0.196 1.196 15 H -0.198 1.198 16 H -0.203 1.203 17 C -0.180 4.180 18 C -0.192 4.192 19 C -0.216 4.216 20 H 0.067 0.933 21 H 0.126 0.874 22 H 0.076 0.924 23 H 0.145 0.855 24 H 0.072 0.928 25 H 0.123 0.877 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.132 0.868 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.693 4.972 -8.948 10.375 hybrid contribution 0.621 1.142 -0.596 1.430 sum -1.072 6.114 -9.544 11.385 Atomic orbital electron populations 1.21776 0.90977 1.03102 1.03827 1.21255 0.99215 0.97110 0.92726 1.21699 1.01318 0.92246 1.03437 1.24883 0.76722 0.80868 0.88641 1.90531 1.37782 1.67674 1.48229 1.86501 1.69025 1.26225 1.45347 1.19927 0.91090 0.90567 0.79761 0.98573 1.22179 1.08038 1.22129 1.14311 0.92528 1.27343 1.00017 1.01544 0.92797 1.70768 1.11274 1.33545 1.41126 0.82810 0.73215 0.73142 0.76017 1.19617 1.19838 1.20342 1.22824 0.90774 0.99229 1.05186 1.22664 1.00615 1.02939 0.92983 1.23257 1.01653 0.99344 0.97335 0.93306 0.87426 0.92449 0.85516 0.92762 0.87694 0.93310 0.90674 0.89406 0.91147 0.87837 0.86845 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.13 71.98 0.66 -2.71 16 2 C -0.08 -2.34 3.36 -11.54 -0.04 -2.38 16 3 C -0.13 -3.02 8.48 71.98 0.61 -2.41 16 4 C 0.44 18.49 6.48 71.23 0.46 18.95 16 5 O -0.55 -25.92 13.03 21.98 0.29 -25.64 16 6 O -0.36 -17.37 9.75 -51.43 -0.50 -17.87 16 7 C 0.24 13.32 2.00 29.85 0.06 13.38 16 8 H 0.00 -0.21 6.77 -2.39 -0.02 -0.23 16 9 C -0.63 -37.01 8.88 25.60 0.23 -36.79 16 10 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16 11 C -0.02 -0.92 5.30 84.66 0.45 -0.47 16 12 N -0.93 -56.16 13.38 21.45 0.29 -55.88 16 13 Si 1.13 50.09 29.90 68.60 2.05 52.14 16 14 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 15 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 16 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 17 C -0.16 -8.05 4.47 -10.80 -0.05 -8.10 16 18 C -0.15 -7.09 8.15 30.62 0.25 -6.84 16 19 C -0.18 -7.48 9.80 30.62 0.30 -7.18 16 20 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.06 1.56 8.11 -2.38 -0.02 1.54 16 23 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 24 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 25 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 27 H 0.28 16.67 3.56 -92.71 -0.33 16.34 16 28 H 0.09 4.52 8.11 -2.39 -0.02 4.50 16 29 H 0.07 3.48 7.42 -2.39 -0.02 3.46 16 30 H 0.10 4.32 8.14 -2.39 -0.02 4.30 16 31 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 32 H 0.09 3.93 5.37 -2.39 -0.01 3.92 16 Total: -1.00 -69.92 265.64 6.58 -63.34 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 1.53 Total: 18.45 kcal Atomic # 6 Polarization: -37.47 SS G_CDS: 2.93 Total: -34.55 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.29 Total: -55.88 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -0.21 Total: -43.51 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 2.05 Total: 52.14 kcal Total: -69.92 6.58 -63.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461400.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.778 kcal (2) G-P(sol) polarization free energy of solvation -69.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds