Wall clock time and date at job start Mon Mar 30 2020 17:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37094 * 119.99990 * 2 1 4 4 H 1.08003 * 120.00306 * 165.94732 * 3 2 1 5 5 C 1.38958 * 119.99941 * 345.93842 * 3 2 1 6 6 N 1.31405 * 119.99751 * 339.30027 * 5 3 2 7 7 Si 1.86800 * 119.99872 * 159.29628 * 5 3 2 8 8 H 1.48499 * 109.47154 * 265.01553 * 7 5 3 9 9 H 1.48505 * 109.47192 * 25.01622 * 7 5 3 10 10 H 1.48496 * 109.46974 * 145.01628 * 7 5 3 11 11 C 1.34778 * 120.00338 * 179.97438 * 2 1 3 12 12 O 1.21292 * 119.99462 * 5.82827 * 11 2 1 13 13 C 1.50694 * 120.00116 * 185.82226 * 11 2 1 14 14 C 1.52996 * 109.87971 * 76.77671 * 13 11 2 15 15 C 1.54323 * 109.88881 * 197.97355 * 13 11 2 16 16 C 1.55140 * 103.01876 * 97.12492 * 15 13 11 17 17 C 1.54907 * 101.65423 * 35.65260 * 16 15 13 18 18 N 1.47437 * 109.89110 * 315.74142 * 13 11 2 19 19 H 1.08999 * 109.47127 * 89.61844 * 1 2 3 20 20 H 1.08997 * 109.47100 * 209.61567 * 1 2 3 21 21 H 1.08997 * 109.47347 * 329.61861 * 1 2 3 22 22 H 0.97006 * 119.99548 * 179.97438 * 6 5 3 23 23 H 1.09004 * 109.47190 * 60.69831 * 14 13 11 24 24 H 1.08999 * 109.47637 * 180.69578 * 14 13 11 25 25 H 1.09001 * 109.47298 * 300.70247 * 14 13 11 26 26 H 1.09000 * 110.70804 * 215.51049 * 15 13 11 27 27 H 1.09000 * 110.70379 * 338.74263 * 15 13 11 28 28 H 1.09007 * 110.98718 * 277.56630 * 16 15 13 29 29 H 1.08998 * 110.99315 * 153.75022 * 16 15 13 30 30 H 1.08998 * 110.37423 * 204.10244 * 17 16 15 31 31 H 1.08995 * 110.46427 * 81.80680 * 17 16 15 32 32 H 1.00898 * 110.99936 * 1.87933 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.2062 1.2013 0.2271 5 6 1.4869 2.3726 -0.2924 6 7 0.3497 2.3439 -0.9502 7 14 2.2114 4.0068 0.2497 8 1 1.6139 4.4065 1.5491 9 1 3.6822 3.8699 0.4024 10 1 1.9141 5.0432 -0.7714 11 6 2.1389 -1.1672 0.0005 12 8 1.5371 -2.2149 -0.1057 13 6 3.6400 -1.1704 0.1329 14 6 4.0345 -0.9133 1.5886 15 6 4.2055 -2.5277 -0.3359 16 6 4.6316 -2.2418 -1.8000 17 6 5.1363 -0.7807 -1.6994 18 7 4.2225 -0.1312 -0.7357 19 1 -0.3633 0.0068 -1.0276 20 1 -0.3633 -0.8934 0.5078 21 1 -0.3634 0.8865 0.5197 22 1 -0.1137 3.1714 -1.1539 23 1 3.6263 -1.7021 2.2205 24 1 5.1211 -0.9047 1.6746 25 1 3.6371 0.0502 1.9080 26 1 5.0668 -2.8153 0.2670 27 1 3.4354 -3.2983 -0.3020 28 1 3.7795 -2.3149 -2.4759 29 1 5.4334 -2.9114 -2.1111 30 1 5.0745 -0.2902 -2.6708 31 1 6.1604 -0.7561 -1.3271 32 1 3.5006 0.3864 -1.2143 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160584386.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:06:46 Heat of formation + Delta-G solvation = -29.994324 kcal Electronic energy + Delta-G solvation = -15269.421118 eV Core-core repulsion = 12843.974447 eV Total energy + Delta-G solvation = -2425.446672 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.38723 -38.32246 -36.87902 -33.49249 -32.32329 -30.93223 -28.30308 -26.79790 -26.28875 -22.48949 -22.11930 -20.40329 -19.28778 -17.79250 -16.58419 -16.30865 -16.06568 -15.62874 -15.53640 -14.65855 -14.24991 -14.19551 -13.74548 -13.34449 -13.23446 -12.94707 -12.77126 -12.61159 -12.54233 -12.17580 -11.98855 -11.78971 -11.71437 -11.50060 -10.99922 -10.41659 -9.81041 -9.25816 -8.32210 -5.86172 1.42711 1.52064 1.64083 1.95839 2.32208 2.85875 3.11391 3.47113 3.85418 3.89676 4.23449 4.32562 4.55367 4.60574 4.71948 4.83998 4.84949 4.93591 4.98728 5.05791 5.11702 5.18232 5.22526 5.38721 5.42424 5.59210 5.79763 6.10045 6.34607 6.70863 7.13539 7.57019 7.95329 8.72394 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.032859 B = 0.013088 C = 0.011133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.916151 B = 2138.889301 C = 2514.518661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.132 3.868 2 N -0.451 5.451 3 C -0.366 4.366 4 H 0.149 0.851 5 C -0.004 4.004 6 N -0.896 5.896 7 Si 0.985 3.015 8 H -0.279 1.279 9 H -0.253 1.253 10 H -0.287 1.287 11 C 0.426 3.574 12 O -0.644 6.644 13 C 0.106 3.894 14 C -0.118 4.118 15 C -0.122 4.122 16 C -0.145 4.145 17 C 0.039 3.961 18 N -0.678 5.678 19 H 0.031 0.969 20 H 0.031 0.969 21 H 0.066 0.934 22 H 0.270 0.730 23 H 0.051 0.949 24 H 0.084 0.916 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.926 -1.550 1.099 9.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.167 5.167 3 C -0.492 4.492 4 H 0.166 0.834 5 C -0.206 4.206 6 N -0.534 5.534 7 Si 0.809 3.191 8 H -0.205 1.205 9 H -0.176 1.176 10 H -0.213 1.213 11 C 0.215 3.785 12 O -0.533 6.533 13 C 0.012 3.988 14 C -0.177 4.177 15 C -0.161 4.161 16 C -0.184 4.184 17 C -0.090 4.090 18 N -0.315 5.315 19 H 0.049 0.951 20 H 0.050 0.950 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.102 0.898 25 H 0.072 0.928 26 H 0.115 0.885 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 8.939 -1.648 1.407 9.198 hybrid contribution -1.229 0.424 -0.589 1.427 sum 7.711 -1.225 0.818 7.850 Atomic orbital electron populations 1.21113 0.81404 0.98775 0.99847 1.43938 1.05673 1.05920 1.61184 1.20870 0.97673 0.82822 1.47842 0.83419 1.26160 0.96535 1.02995 0.94948 1.70237 1.18450 1.29506 1.35202 0.85018 0.79660 0.76874 0.77572 1.20455 1.17594 1.21261 1.21317 0.91601 0.83041 0.82562 1.90456 1.71221 1.32977 1.58628 1.21525 0.87953 0.92478 0.96873 1.21691 1.02346 1.01333 0.92281 1.22762 1.00890 0.95520 0.96912 1.23067 1.00734 0.98789 0.95817 1.23068 0.98258 0.92231 0.95402 1.62550 1.22675 1.23087 1.23227 0.95078 0.95029 0.91495 0.91986 0.93042 0.89763 0.92769 0.88459 0.91883 0.94199 0.88044 0.91453 0.88774 0.81809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.85 8.70 127.77 1.11 7.97 16 2 N -0.45 -23.30 3.02 -658.91 -1.99 -25.29 16 3 C -0.37 -18.05 6.71 84.04 0.56 -17.49 16 4 H 0.15 6.92 4.30 -2.91 -0.01 6.91 16 5 C 0.00 -0.18 4.94 84.93 0.42 0.24 16 6 N -0.90 -46.78 10.69 21.66 0.23 -46.55 16 7 Si 0.98 39.11 29.60 68.60 2.03 41.14 16 8 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 9 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 10 H -0.29 -11.37 7.11 99.48 0.71 -10.66 16 11 C 0.43 21.25 6.46 87.65 0.57 21.82 16 12 O -0.64 -35.61 15.07 -3.07 -0.05 -35.66 16 13 C 0.11 4.21 0.77 3.12 0.00 4.21 16 14 C -0.12 -4.18 8.49 71.98 0.61 -3.57 16 15 C -0.12 -4.21 5.94 31.78 0.19 -4.02 16 16 C -0.15 -4.45 7.08 31.98 0.23 -4.23 16 17 C 0.04 1.19 7.57 86.77 0.66 1.84 16 18 N -0.68 -25.87 5.27 -464.91 -2.45 -28.32 16 19 H 0.03 1.68 7.81 -2.39 -0.02 1.66 16 20 H 0.03 1.58 7.50 -2.39 -0.02 1.56 16 21 H 0.07 3.46 6.60 -2.39 -0.02 3.44 16 22 H 0.27 13.36 8.31 -92.70 -0.77 12.59 16 23 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 24 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.05 2.07 6.87 -2.39 -0.02 2.05 16 26 H 0.10 2.73 7.86 -2.39 -0.02 2.72 16 27 H 0.06 2.50 6.71 -2.39 -0.02 2.48 16 28 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.36 15.76 5.43 -89.70 -0.49 15.28 16 Total: -1.00 -59.53 251.87 2.76 -56.77 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.63 Total: 31.13 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 4.35 Total: 6.78 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -4.20 Total: -100.15 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.05 Total: -35.66 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -59.53 2.76 -56.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160584386.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.773 kcal (2) G-P(sol) polarization free energy of solvation -59.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds