Wall clock time and date at job start Mon Mar 30 2020 17:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37098 * 120.00030 * 2 1 4 4 H 1.08003 * 119.99453 * 202.76367 * 3 2 1 5 5 C 1.38944 * 119.99955 * 22.75893 * 3 2 1 6 6 N 1.31411 * 120.00277 * 10.99578 * 5 3 2 7 7 Si 1.86803 * 119.99920 * 190.99117 * 5 3 2 8 8 H 1.48502 * 109.47147 * 90.00300 * 7 5 3 9 9 H 1.48499 * 109.47277 * 210.00216 * 7 5 3 10 10 H 1.48500 * 109.47123 * 330.00506 * 7 5 3 11 11 C 1.34784 * 119.99791 * 180.02562 * 2 1 3 12 12 O 1.21293 * 119.99472 * 179.97438 * 11 2 1 13 13 C 1.50696 * 119.99763 * 359.97438 * 11 2 1 14 14 C 1.53127 * 109.51682 * 180.02562 * 13 11 2 15 15 C 1.53045 * 109.27458 * 177.55857 * 14 13 11 16 16 N 1.46850 * 109.52292 * 300.82101 * 15 14 13 17 17 C 1.46847 * 111.19735 * 61.74086 * 16 15 14 18 18 C 1.53035 * 109.52681 * 298.25801 * 17 16 15 19 19 H 1.09005 * 109.47157 * 272.57023 * 1 2 3 20 20 H 1.09001 * 109.47561 * 32.56577 * 1 2 3 21 21 H 1.09003 * 109.47559 * 152.56393 * 1 2 3 22 22 H 0.97001 * 120.00279 * 179.97438 * 6 5 3 23 23 H 1.08998 * 109.57703 * 59.84229 * 13 11 2 24 24 H 1.08995 * 109.50367 * 57.62029 * 14 13 11 25 25 H 1.08991 * 109.50363 * 297.49742 * 14 13 11 26 26 H 1.08998 * 109.46062 * 180.80614 * 15 14 13 27 27 H 1.09001 * 109.45947 * 60.83602 * 15 14 13 28 28 H 1.00897 * 110.99670 * 185.83887 * 16 15 14 29 29 H 1.09001 * 109.46126 * 58.27627 * 17 16 15 30 30 H 1.09000 * 109.45957 * 178.23729 * 17 16 15 31 31 H 1.09001 * 109.50108 * 299.23718 * 18 17 16 32 32 H 1.09001 * 109.50336 * 179.11980 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1674 1.2236 -0.3619 5 6 1.5369 2.3437 0.4655 6 7 0.3896 2.2684 1.1019 7 14 2.3428 4.0057 0.1868 8 1 1.8737 4.5734 -1.1028 9 1 1.9775 4.9250 1.2943 10 1 3.8180 3.8401 0.1472 11 6 2.1388 -1.1673 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3852 -2.4723 -0.0005 14 6 2.3793 -3.6370 -0.0005 15 6 1.6094 -4.9583 0.0610 16 7 0.7885 -4.9918 1.2782 17 6 -0.2051 -3.9105 1.2785 18 6 0.5105 -2.5581 1.2533 19 1 -0.3634 0.0461 1.0267 20 1 -0.3634 0.8661 -0.5531 21 1 -0.3634 -0.9121 -0.4735 22 1 -0.0386 3.0757 1.4272 23 1 0.7555 -2.5304 -0.8883 24 1 3.0340 -3.5567 0.8671 25 1 2.9763 -3.6059 -0.9118 26 1 2.3146 -5.7892 0.0756 27 1 0.9651 -5.0442 -0.8140 28 1 0.3447 -5.8909 1.3904 29 1 -0.8409 -4.0015 0.3978 30 1 -0.8178 -3.9806 2.1773 31 1 1.1359 -2.4607 2.1407 32 1 -0.2275 -1.7561 1.2377 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160585005.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:06:52 Heat of formation + Delta-G solvation = -31.174495 kcal Electronic energy + Delta-G solvation = -14780.920713 eV Core-core repulsion = 12355.422866 eV Total energy + Delta-G solvation = -2425.497848 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.26799 -37.11491 -34.65947 -32.18953 -31.15256 -30.36490 -26.31693 -25.13436 -23.30514 -22.54062 -19.87280 -18.53772 -16.87473 -16.35320 -15.91819 -14.57825 -14.37974 -14.19547 -14.08898 -13.49982 -13.03579 -12.70768 -12.47000 -11.83678 -11.62328 -11.32235 -11.19401 -10.93892 -10.80449 -10.61024 -10.35045 -10.26947 -10.05412 -9.88531 -8.96194 -8.35533 -8.20098 -7.61914 -6.26019 -3.82830 3.19222 3.27439 3.33439 3.95922 4.18289 4.38156 4.88513 5.13146 5.16387 5.29222 5.48837 5.50986 5.68657 5.76455 5.87605 5.99930 6.05176 6.21069 6.29855 6.43901 6.51632 6.70562 6.85952 6.93131 7.18255 7.26756 7.51266 7.61172 8.19787 8.55178 9.25148 9.49548 10.06466 10.77728 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.058748 B = 0.008508 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.500607 B = 3290.344609 C = 3625.442768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.449 5.449 3 C -0.305 4.305 4 H 0.097 0.903 5 C 0.029 3.971 6 N -0.886 5.886 7 Si 0.926 3.074 8 H -0.279 1.279 9 H -0.284 1.284 10 H -0.270 1.270 11 C 0.453 3.547 12 O -0.590 6.590 13 C -0.097 4.097 14 C -0.092 4.092 15 C 0.059 3.941 16 N -0.691 5.691 17 C 0.061 3.939 18 C -0.118 4.118 19 H 0.061 0.939 20 H 0.065 0.935 21 H 0.027 0.973 22 H 0.266 0.734 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.025 0.975 28 H 0.336 0.664 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.583 -9.626 -1.327 10.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.167 5.167 3 C -0.433 4.433 4 H 0.115 0.885 5 C -0.174 4.174 6 N -0.526 5.526 7 Si 0.753 3.247 8 H -0.205 1.205 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.241 3.759 12 O -0.475 6.475 13 C -0.119 4.119 14 C -0.131 4.131 15 C -0.070 4.070 16 N -0.322 5.322 17 C -0.068 4.068 18 C -0.156 4.156 19 H 0.079 0.921 20 H 0.083 0.917 21 H 0.045 0.955 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.153 0.847 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.676 -9.092 -0.872 9.845 hybrid contribution -0.563 0.606 -0.723 1.098 sum -4.239 -8.485 -1.595 9.618 Atomic orbital electron populations 1.21601 0.81448 0.98420 1.01537 1.43568 1.05382 1.04792 1.62992 1.19672 0.99600 0.84060 1.39964 0.88493 1.25324 0.96550 0.99995 0.95484 1.69988 1.17343 1.29169 1.36073 0.85926 0.79676 0.81344 0.77756 1.20468 1.20968 1.19415 1.20035 0.87930 0.84740 0.83217 1.90496 1.14095 1.87185 1.55716 1.21158 0.97421 0.94624 0.98667 1.21327 0.97130 0.91423 1.03172 1.21978 0.96145 0.98815 0.90081 1.60279 1.26151 1.06422 1.39345 1.21941 0.92915 0.91942 1.00000 1.21827 0.99412 0.96288 0.98080 0.92082 0.91657 0.95500 0.92367 0.90832 0.90617 0.91450 0.91048 0.95635 0.84724 0.95468 0.90939 0.91019 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.57 7.05 59.84 0.42 2.99 16 2 N -0.45 -11.79 3.02 -122.19 -0.37 -12.16 16 3 C -0.30 -8.73 9.28 -14.94 -0.14 -8.87 16 4 H 0.10 2.91 7.41 -52.48 -0.39 2.52 16 5 C 0.03 0.78 5.13 -17.47 -0.09 0.69 16 6 N -0.89 -23.90 10.60 55.50 0.59 -23.32 16 7 Si 0.93 21.18 29.57 -169.99 -5.03 16.16 16 8 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 C 0.45 11.41 7.03 -10.98 -0.08 11.33 16 12 O -0.59 -16.94 15.67 5.55 0.09 -16.86 16 13 C -0.10 -1.87 1.78 -91.65 -0.16 -2.03 16 14 C -0.09 -1.63 4.68 -26.64 -0.12 -1.75 16 15 C 0.06 0.81 6.55 -3.83 -0.03 0.78 16 16 N -0.69 -9.23 6.85 -113.81 -0.78 -10.01 16 17 C 0.06 0.84 6.55 -3.83 -0.03 0.82 16 18 C -0.12 -2.06 4.98 -26.65 -0.13 -2.20 16 19 H 0.06 1.42 6.54 -51.93 -0.34 1.08 16 20 H 0.06 1.56 7.10 -51.93 -0.37 1.19 16 21 H 0.03 0.51 5.79 -51.93 -0.30 0.21 16 22 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 23 H 0.07 1.32 7.40 -51.93 -0.38 0.94 16 24 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.34 3.54 8.90 -39.29 -0.35 3.19 16 29 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.08 1.50 4.68 -51.93 -0.24 1.26 16 LS Contribution 253.07 15.07 3.81 3.81 Total: -1.00 -31.34 253.07 -6.50 -37.84 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.46 Total: 2.76 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -0.35 Total: 1.77 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.56 Total: -45.48 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: 0.09 Total: -16.86 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.34 -6.50 -37.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160585005.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.664 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds