Wall clock time and date at job start Mon Mar 30 2020 17:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47092 * 2 1 4 4 C 1.52998 * 109.47307 * 239.99635 * 2 1 3 5 5 C 1.52996 * 109.47247 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47218 * 59.99947 * 5 4 2 7 7 H 1.09003 * 109.47076 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46730 * 59.99955 * 6 5 4 9 9 C 1.52998 * 109.47055 * 300.00170 * 6 5 4 10 10 H 1.08998 * 109.47343 * 299.99754 * 9 6 5 11 11 O 1.42899 * 109.46942 * 179.97438 * 9 6 5 12 12 C 1.42905 * 113.99778 * 149.99763 * 11 9 6 13 13 C 1.50699 * 109.46972 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99963 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99835 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47092 * 90.00048 * 17 15 13 19 19 H 1.48498 * 109.47340 * 210.00299 * 17 15 13 20 20 H 1.48501 * 109.47391 * 330.00372 * 17 15 13 21 21 C 1.52996 * 109.47247 * 59.99847 * 9 6 5 22 22 H 1.08998 * 109.47092 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46981 * 300.00373 * 1 2 3 24 24 H 1.09001 * 109.46993 * 60.00556 * 1 2 3 25 25 H 1.09001 * 109.47250 * 59.99966 * 4 2 1 26 26 H 1.09003 * 109.46993 * 300.00530 * 4 2 1 27 27 H 1.08998 * 109.47025 * 300.00287 * 5 4 2 28 28 H 1.09001 * 109.46920 * 179.97438 * 5 4 2 29 29 H 1.09001 * 109.47827 * 299.99843 * 8 6 5 30 30 H 1.09001 * 109.47345 * 59.99993 * 8 6 5 31 31 H 1.09006 * 109.47233 * 179.97438 * 8 6 5 32 32 H 1.09000 * 109.47187 * 300.00233 * 12 11 9 33 33 H 1.09001 * 109.46558 * 60.00281 * 12 11 9 34 34 H 0.96992 * 120.00038 * 180.02562 * 16 15 13 35 35 H 1.09003 * 109.47460 * 59.99874 * 21 9 6 36 36 H 1.08997 * 109.47597 * 179.97438 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7219 -1.2488 6 6 4.0796 -1.4434 0.0005 7 1 5.1696 -1.4442 0.0005 8 6 3.5690 -2.8857 0.0002 9 6 3.5695 -0.7221 1.2496 10 1 3.9332 0.3054 1.2499 11 8 4.0449 -1.3963 2.4164 12 6 4.2388 -0.5401 3.5440 13 6 4.7391 -1.3519 4.7110 14 1 4.8931 -2.4153 4.6025 15 6 4.9992 -0.7372 5.9174 16 7 4.8101 0.5576 6.0499 17 14 5.6186 -1.7434 7.3641 18 1 7.1032 -1.7771 7.3441 19 1 5.1545 -1.1252 8.6320 20 1 5.0908 -3.1280 7.2663 21 6 2.0396 -0.7215 1.2493 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6768 -0.2076 -2.1392 26 1 1.6767 -1.7490 -1.2491 27 1 3.9337 0.3057 -1.2486 28 1 3.9334 -1.2362 -2.1386 29 1 2.4790 -2.8854 0.0000 30 1 3.9323 -3.3996 -0.8898 31 1 3.9323 -3.4000 0.8900 32 1 4.9713 0.2278 3.2954 33 1 3.2927 -0.0678 3.8085 34 1 4.9935 0.9902 6.8985 35 1 1.6758 -1.7491 1.2491 36 1 1.6761 -0.2081 2.1394 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205610412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:07:32 Heat of formation + Delta-G solvation = -103.657908 kcal Electronic energy + Delta-G solvation = -14764.436971 eV Core-core repulsion = 12439.336350 eV Total energy + Delta-G solvation = -2325.100621 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.63224 -37.64435 -34.95686 -34.17649 -31.04110 -29.21507 -28.75740 -26.14844 -24.73226 -23.13176 -21.81921 -19.72886 -18.58610 -17.38542 -16.80264 -16.18596 -16.11752 -15.64575 -15.11543 -14.55654 -14.28268 -14.01473 -13.72226 -13.39764 -12.93974 -12.92294 -12.87212 -12.77556 -12.42587 -12.35797 -12.21106 -11.81807 -11.58215 -11.46503 -11.20694 -11.09059 -10.97663 -10.77163 -10.06698 -8.34510 -6.47606 1.37520 1.40874 1.52955 2.32649 2.98773 3.13994 3.74148 3.76760 4.02382 4.16629 4.25411 4.33085 4.44435 4.53613 4.58979 4.73131 4.76936 4.79683 4.92671 4.99249 5.03319 5.06342 5.08470 5.15892 5.20694 5.22649 5.32771 5.46168 5.47074 5.50347 5.54114 5.67602 5.94841 6.54132 6.83164 7.25027 8.77971 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.045327 B = 0.007010 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.583340 B = 3993.258066 C = 4285.281746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.062 0.938 4 C -0.110 4.110 5 C -0.107 4.107 6 C -0.086 4.086 7 H 0.059 0.941 8 C -0.137 4.137 9 C 0.081 3.919 10 H 0.032 0.968 11 O -0.401 6.401 12 C 0.214 3.786 13 C -0.550 4.550 14 H 0.061 0.939 15 C 0.005 3.995 16 N -0.931 5.931 17 Si 0.985 3.015 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.264 1.264 21 C -0.129 4.129 22 H 0.058 0.942 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.034 0.966 32 H -0.021 1.021 33 H -0.018 1.018 34 H 0.271 0.729 35 H 0.069 0.931 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.925 -2.376 -14.469 15.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 H 0.081 0.919 4 C -0.147 4.147 5 C -0.144 4.144 6 C -0.105 4.105 7 H 0.077 0.923 8 C -0.194 4.194 9 C 0.023 3.977 10 H 0.050 0.950 11 O -0.321 6.321 12 C 0.139 3.861 13 C -0.587 4.587 14 H 0.080 0.920 15 C -0.193 4.193 16 N -0.571 5.571 17 Si 0.807 3.193 18 H -0.192 1.192 19 H -0.198 1.198 20 H -0.188 1.188 21 C -0.167 4.167 22 H 0.077 0.923 23 H 0.063 0.937 24 H 0.093 0.907 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.053 0.947 32 H -0.004 1.004 33 H -0.001 1.001 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.886 -2.427 -14.346 15.696 hybrid contribution 0.386 0.328 1.233 1.333 sum -5.501 -2.099 -13.113 14.374 Atomic orbital electron populations 1.21788 0.93883 1.02220 1.02006 1.21104 0.96553 0.98990 0.93994 0.91947 1.21636 0.94766 1.01298 0.96992 1.21546 0.96376 1.00256 0.96227 1.21185 0.99656 0.96562 0.93104 0.92271 1.21762 1.01484 0.94856 1.01249 1.22236 0.94082 0.94775 0.86578 0.94974 1.87832 1.86415 1.37040 1.20821 1.19769 0.92890 0.89651 0.83818 1.21405 1.45558 0.95660 0.96099 0.92050 1.26003 0.95096 0.96394 1.01806 1.70080 1.49029 1.10903 1.27040 0.85164 0.78817 0.78461 0.76856 1.19154 1.19763 1.18835 1.22043 0.95166 1.01313 0.98131 0.92267 0.93665 0.90737 0.89716 0.90944 0.92142 0.89319 0.91713 0.90937 0.94703 1.00350 1.00057 0.92010 0.91248 0.94774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.19 71.98 0.66 -2.36 16 2 C -0.09 -2.24 2.72 -10.79 -0.03 -2.27 16 3 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.11 -2.26 4.93 30.59 0.15 -2.10 16 5 C -0.11 -2.43 5.45 30.59 0.17 -2.26 16 6 C -0.09 -2.70 2.94 -10.79 -0.03 -2.73 16 7 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 8 C -0.14 -3.94 8.35 71.98 0.60 -3.34 16 9 C 0.08 3.24 2.29 30.59 0.07 3.31 16 10 H 0.03 1.35 7.79 -2.39 -0.02 1.33 16 11 O -0.40 -20.61 9.30 -148.98 -1.38 -22.00 16 12 C 0.21 12.62 5.50 71.24 0.39 13.02 16 13 C -0.55 -33.94 9.43 25.60 0.24 -33.70 16 14 H 0.06 3.74 7.81 -2.91 -0.02 3.72 16 15 C 0.01 0.32 5.46 84.65 0.46 0.78 16 16 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 17 Si 0.98 45.36 29.54 68.60 2.03 47.39 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 21 C -0.13 -4.47 4.54 30.59 0.14 -4.33 16 22 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.43 6.43 -2.39 -0.02 1.41 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.74 4.81 -2.39 -0.01 1.73 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.03 1.20 7.68 -2.38 -0.02 1.18 16 32 H -0.02 -1.32 8.09 -2.39 -0.02 -1.34 16 33 H -0.02 -1.13 7.87 -2.39 -0.02 -1.15 16 34 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.07 2.37 6.43 -2.39 -0.02 2.35 16 36 H 0.03 1.34 7.87 -2.39 -0.02 1.33 16 Total: -1.00 -67.74 280.61 4.77 -62.98 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 1.02 Total: 4.83 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 2.82 Total: -36.00 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.28 Total: -57.20 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -1.38 Total: -22.00 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -67.74 4.77 -62.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.681 kcal (2) G-P(sol) polarization free energy of solvation -67.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds