Wall clock time and date at job start Mon Mar 30 2020 17:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46987 * 2 1 4 4 C 1.52999 * 109.46982 * 239.99853 * 2 1 3 5 5 C 1.52997 * 109.47001 * 179.97438 * 4 2 1 6 6 C 1.53011 * 109.46735 * 60.00361 * 5 4 2 7 7 C 1.52999 * 109.47082 * 299.99590 * 6 5 4 8 8 H 1.09002 * 109.46685 * 300.00323 * 7 6 5 9 9 O 1.42890 * 109.47217 * 180.02562 * 7 6 5 10 10 C 1.42901 * 114.00075 * 89.99780 * 9 7 6 11 11 C 1.50703 * 109.47307 * 180.02562 * 10 9 7 12 12 H 1.07994 * 119.99603 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99838 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00380 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99848 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47261 * 239.99776 * 15 13 11 18 18 H 1.48500 * 109.47454 * 119.99769 * 15 13 11 19 19 C 1.52997 * 109.47046 * 60.00014 * 7 6 5 20 20 H 1.09007 * 109.46981 * 300.00105 * 1 2 3 21 21 H 1.09007 * 109.47094 * 59.99788 * 1 2 3 22 22 H 1.08990 * 109.47600 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46585 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.46904 * 300.00006 * 3 2 1 25 25 H 1.08997 * 109.47337 * 60.00009 * 3 2 1 26 26 H 1.08993 * 109.47332 * 300.00441 * 4 2 1 27 27 H 1.09007 * 109.46913 * 60.00249 * 4 2 1 28 28 H 1.08997 * 109.47094 * 179.97438 * 5 4 2 29 29 H 1.08993 * 109.47672 * 300.00519 * 5 4 2 30 30 H 1.08998 * 109.46683 * 179.97438 * 6 5 4 31 31 H 1.08993 * 109.46911 * 59.99693 * 6 5 4 32 32 H 1.09005 * 109.47211 * 60.00193 * 10 9 7 33 33 H 1.08998 * 109.47189 * 300.00217 * 10 9 7 34 34 H 0.97001 * 119.99667 * 0.02562 * 14 13 11 35 35 H 1.09002 * 109.47422 * 59.99856 * 19 7 6 36 36 H 1.08997 * 109.47139 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0804 -1.4417 -0.0002 7 6 3.5705 -0.7204 1.2490 8 1 3.9335 0.3073 1.2487 9 8 4.0477 -1.3934 2.4157 10 6 5.3072 -0.9128 2.8896 11 6 5.7121 -1.6894 4.1160 12 1 5.0718 -2.4721 4.4952 13 6 6.9000 -1.4008 4.7537 14 7 7.6799 -0.4481 4.2916 15 14 7.4022 -2.3640 6.2734 16 1 6.3595 -3.3741 6.5863 17 1 7.5507 -1.4344 7.4220 18 1 8.6953 -3.0489 6.0205 19 6 2.0405 -0.7209 1.2493 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0275 0.0005 23 1 3.1301 1.4425 -0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.6766 -1.7489 -1.2493 27 1 1.6767 -0.2074 -2.1392 28 1 3.9333 -1.2350 -2.1393 29 1 3.9330 0.3070 -1.2497 30 1 5.1704 -1.4417 -0.0007 31 1 3.7174 -2.4694 -0.0001 32 1 5.2216 0.1445 3.1406 33 1 6.0610 -1.0419 2.1130 34 1 7.4193 0.0518 3.5022 35 1 1.6774 -1.7486 1.2495 36 1 1.6772 -0.2066 2.1390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205621615.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:07:47 Heat of formation + Delta-G solvation = -88.742950 kcal Electronic energy + Delta-G solvation = -14748.324553 eV Core-core repulsion = 12423.870693 eV Total energy + Delta-G solvation = -2324.453860 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.50510 -36.35745 -33.09900 -32.44624 -29.69286 -27.32131 -26.40384 -26.18550 -22.57636 -22.10977 -20.73725 -18.29752 -16.92769 -15.91894 -14.98002 -14.56539 -14.34864 -14.12720 -13.74376 -13.43997 -12.81511 -12.67884 -12.49806 -12.01761 -11.84397 -11.79964 -11.34420 -11.20346 -10.92741 -10.79608 -10.69469 -10.47407 -10.26164 -10.11046 -10.03035 -9.64268 -8.77093 -8.59171 -8.17898 -6.45307 -4.13528 3.43477 3.47890 3.63077 4.40249 4.60114 4.74358 4.84832 5.10371 5.25976 5.32802 5.41134 5.46584 5.52765 5.64867 5.68050 5.77599 5.79259 5.82476 5.91683 6.02976 6.08651 6.10302 6.19735 6.30169 6.39569 6.40861 6.52028 6.61752 6.71023 6.84512 7.17487 7.94492 8.22029 8.67661 8.84210 9.57366 10.95071 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.055329 B = 0.006449 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.942224 B = 4340.694665 C = 4458.593532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.147 4.147 4 C -0.107 4.107 5 C -0.118 4.118 6 C -0.140 4.140 7 C 0.087 3.913 8 H 0.051 0.949 9 O -0.383 6.383 10 C 0.187 3.813 11 C -0.596 4.596 12 H 0.061 0.939 13 C 0.016 3.984 14 N -0.913 5.913 15 Si 1.084 2.916 16 H -0.287 1.287 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.102 4.102 20 H 0.054 0.946 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.065 0.935 32 H -0.007 1.007 33 H -0.006 1.006 34 H 0.267 0.733 35 H 0.066 0.934 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.382 1.577 -10.463 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.063 4.063 3 C -0.204 4.204 4 C -0.144 4.144 5 C -0.156 4.156 6 C -0.178 4.178 7 C 0.028 3.972 8 H 0.069 0.931 9 O -0.302 6.302 10 C 0.112 3.888 11 C -0.634 4.634 12 H 0.079 0.921 13 C -0.187 4.187 14 N -0.549 5.549 15 Si 0.911 3.089 16 H -0.213 1.213 17 H -0.212 1.212 18 H -0.212 1.212 19 C -0.140 4.140 20 H 0.073 0.927 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.011 0.989 33 H 0.012 0.988 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.298 1.273 -9.223 13.883 hybrid contribution -0.977 0.419 -1.368 1.732 sum -11.275 1.692 -10.591 15.561 Atomic orbital electron populations 1.21843 0.94664 1.01639 1.01462 1.20512 0.95069 0.95534 0.95218 1.21999 1.01748 0.95306 1.01322 1.21599 0.95710 1.00306 0.96812 1.21548 0.95486 1.00814 0.97737 1.22033 1.00942 1.00206 0.94595 1.21921 0.93532 0.95261 0.86480 0.93128 1.87903 1.39334 1.60847 1.42123 1.20299 0.80260 0.93965 0.94235 1.21981 1.08077 1.21480 1.11851 0.92107 1.25938 0.92688 0.97295 1.02775 1.70741 1.38884 1.21031 1.24266 0.83341 0.75681 0.75309 0.74540 1.21271 1.21161 1.21157 1.21606 0.94771 1.00800 0.96823 0.92652 0.92872 0.92712 0.91959 0.92986 0.92696 0.91992 0.92303 0.92228 0.91866 0.91961 0.91629 0.98894 0.98800 0.92275 0.91544 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.48 37.16 0.31 -1.16 16 2 C -0.06 -0.80 0.77 -154.50 -0.12 -0.91 16 3 C -0.15 -1.80 7.78 37.16 0.29 -1.51 16 4 C -0.11 -1.27 4.73 -26.73 -0.13 -1.39 16 5 C -0.12 -1.57 5.65 -26.73 -0.15 -1.72 16 6 C -0.14 -2.39 5.54 -26.73 -0.15 -2.53 16 7 C 0.09 1.67 2.34 -26.73 -0.06 1.61 16 8 H 0.05 0.99 6.07 -51.93 -0.32 0.67 16 9 O -0.38 -9.61 9.97 -35.23 -0.35 -9.96 16 10 C 0.19 5.24 4.81 36.01 0.17 5.41 16 11 C -0.60 -18.15 9.43 -34.44 -0.32 -18.47 16 12 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 13 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 14 N -0.91 -28.43 13.65 55.43 0.76 -27.67 16 15 Si 1.08 25.98 29.90 -169.99 -5.08 20.89 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.10 -1.64 4.38 -26.73 -0.12 -1.76 16 20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.83 4.81 -51.93 -0.25 0.58 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.82 6.43 -51.93 -0.33 0.49 16 30 H 0.06 1.15 7.87 -51.93 -0.41 0.74 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H -0.01 -0.19 7.95 -51.93 -0.41 -0.60 16 33 H -0.01 -0.16 7.74 -51.93 -0.40 -0.56 16 34 H 0.27 8.28 7.22 -40.82 -0.29 7.98 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 279.67 15.07 4.21 4.21 Total: -1.00 -31.81 279.67 -7.10 -38.92 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -6.27 Total: -4.33 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: -0.37 Total: -22.06 kcal Atomic # 7 Polarization: -28.43 SS G_CDS: 0.76 Total: -27.67 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.35 Total: -9.96 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -5.08 Total: 20.89 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.81 -7.10 -38.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205621615.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.824 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds