Wall clock time and date at job start Mon Mar 30 2020 17:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46987 * 2 1 4 4 C 1.52999 * 109.46982 * 239.99853 * 2 1 3 5 5 C 1.52997 * 109.47001 * 179.97438 * 4 2 1 6 6 C 1.53011 * 109.46735 * 60.00361 * 5 4 2 7 7 C 1.52999 * 109.47082 * 299.99590 * 6 5 4 8 8 H 1.09002 * 109.46685 * 300.00323 * 7 6 5 9 9 O 1.42890 * 109.47217 * 180.02562 * 7 6 5 10 10 C 1.42901 * 114.00075 * 89.99780 * 9 7 6 11 11 C 1.50703 * 109.47307 * 180.02562 * 10 9 7 12 12 H 1.07994 * 119.99603 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99838 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00380 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99848 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47261 * 239.99776 * 15 13 11 18 18 H 1.48500 * 109.47454 * 119.99769 * 15 13 11 19 19 C 1.52997 * 109.47046 * 60.00014 * 7 6 5 20 20 H 1.09007 * 109.46981 * 300.00105 * 1 2 3 21 21 H 1.09007 * 109.47094 * 59.99788 * 1 2 3 22 22 H 1.08990 * 109.47600 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46585 * 180.02562 * 3 2 1 24 24 H 1.08996 * 109.46904 * 300.00006 * 3 2 1 25 25 H 1.08997 * 109.47337 * 60.00009 * 3 2 1 26 26 H 1.08993 * 109.47332 * 300.00441 * 4 2 1 27 27 H 1.09007 * 109.46913 * 60.00249 * 4 2 1 28 28 H 1.08997 * 109.47094 * 179.97438 * 5 4 2 29 29 H 1.08993 * 109.47672 * 300.00519 * 5 4 2 30 30 H 1.08998 * 109.46683 * 179.97438 * 6 5 4 31 31 H 1.08993 * 109.46911 * 59.99693 * 6 5 4 32 32 H 1.09005 * 109.47211 * 60.00193 * 10 9 7 33 33 H 1.08998 * 109.47189 * 300.00217 * 10 9 7 34 34 H 0.97001 * 119.99667 * 0.02562 * 14 13 11 35 35 H 1.09002 * 109.47422 * 59.99856 * 19 7 6 36 36 H 1.08997 * 109.47139 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0804 -1.4417 -0.0002 7 6 3.5705 -0.7204 1.2490 8 1 3.9335 0.3073 1.2487 9 8 4.0477 -1.3934 2.4157 10 6 5.3072 -0.9128 2.8896 11 6 5.7121 -1.6894 4.1160 12 1 5.0718 -2.4721 4.4952 13 6 6.9000 -1.4008 4.7537 14 7 7.6799 -0.4481 4.2916 15 14 7.4022 -2.3640 6.2734 16 1 6.3595 -3.3741 6.5863 17 1 7.5507 -1.4344 7.4220 18 1 8.6953 -3.0489 6.0205 19 6 2.0405 -0.7209 1.2493 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0275 0.0005 23 1 3.1301 1.4425 -0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.6766 -1.7489 -1.2493 27 1 1.6767 -0.2074 -2.1392 28 1 3.9333 -1.2350 -2.1393 29 1 3.9330 0.3070 -1.2497 30 1 5.1704 -1.4417 -0.0007 31 1 3.7174 -2.4694 -0.0001 32 1 5.2216 0.1445 3.1406 33 1 6.0610 -1.0419 2.1130 34 1 7.4193 0.0518 3.5022 35 1 1.6774 -1.7486 1.2495 36 1 1.6772 -0.2066 2.1390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205621615.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:07:47 Heat of formation + Delta-G solvation = -107.827235 kcal Electronic energy + Delta-G solvation = -14749.152110 eV Core-core repulsion = 12423.870693 eV Total energy + Delta-G solvation = -2325.281417 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.79795 -38.13684 -35.28019 -33.73022 -31.16113 -28.59741 -28.23645 -27.31596 -24.83987 -23.37593 -22.10040 -19.60336 -19.02099 -17.63264 -16.47676 -16.08831 -15.66530 -15.64634 -15.45534 -14.71970 -14.54247 -14.16119 -14.04678 -13.51261 -13.10067 -12.86217 -12.81784 -12.68585 -12.44154 -12.29692 -11.96071 -11.91987 -11.91666 -11.43081 -11.28539 -11.01921 -10.84569 -10.76837 -10.24365 -8.88145 -6.59152 1.49997 1.60279 1.79739 2.46240 2.94722 2.99385 3.63807 3.72004 3.93524 4.07620 4.16336 4.18980 4.33396 4.40256 4.46238 4.54702 4.64810 4.77956 4.81229 4.83063 4.92064 5.00577 5.02758 5.06422 5.07145 5.14929 5.21376 5.28996 5.40600 5.45696 5.56661 5.66525 5.89770 6.29024 6.66407 7.22498 8.52816 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.055329 B = 0.006449 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.942224 B = 4340.694665 C = 4458.593532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.059 4.059 3 C -0.147 4.147 4 C -0.103 4.103 5 C -0.112 4.112 6 C -0.136 4.136 7 C 0.074 3.926 8 H 0.043 0.957 9 O -0.404 6.404 10 C 0.201 3.799 11 C -0.626 4.626 12 H 0.052 0.948 13 C -0.029 4.029 14 N -0.927 5.927 15 Si 1.134 2.866 16 H -0.272 1.272 17 H -0.270 1.270 18 H -0.270 1.270 19 C -0.097 4.097 20 H 0.053 0.947 21 H 0.074 0.926 22 H 0.058 0.942 23 H 0.044 0.956 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.063 0.937 32 H -0.022 1.022 33 H -0.020 1.020 34 H 0.255 0.745 35 H 0.064 0.936 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.536 1.350 -11.266 16.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.059 4.059 3 C -0.204 4.204 4 C -0.141 4.141 5 C -0.150 4.150 6 C -0.174 4.174 7 C 0.017 3.983 8 H 0.062 0.938 9 O -0.323 6.323 10 C 0.126 3.874 11 C -0.663 4.663 12 H 0.070 0.930 13 C -0.226 4.226 14 N -0.564 5.564 15 Si 0.953 3.047 16 H -0.197 1.197 17 H -0.195 1.195 18 H -0.195 1.195 19 C -0.135 4.135 20 H 0.072 0.928 21 H 0.093 0.907 22 H 0.077 0.923 23 H 0.063 0.937 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.081 0.919 32 H -0.005 1.005 33 H -0.002 1.002 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.476 1.062 -10.062 15.300 hybrid contribution -0.651 0.523 -1.176 1.442 sum -12.127 1.584 -11.238 16.610 Atomic orbital electron populations 1.21811 0.92592 1.02300 1.02509 1.20528 0.96624 0.95201 0.93589 1.22006 1.00661 0.95367 1.02397 1.21613 0.94164 1.00916 0.97372 1.21538 0.96863 1.00519 0.96043 1.21989 0.99459 1.00416 0.95572 1.22341 0.95856 0.94705 0.85406 0.93850 1.87844 1.37874 1.61837 1.44795 1.19930 0.81352 0.92762 0.93384 1.22331 1.08839 1.21971 1.13167 0.92960 1.27678 0.92334 0.97182 1.05426 1.70870 1.39394 1.21871 1.24218 0.82749 0.76356 0.74624 0.71001 1.19692 1.19496 1.19503 1.21625 0.91926 1.01223 0.98704 0.92829 0.90656 0.92287 0.93673 0.90420 0.93161 0.91541 0.89377 0.90244 0.91654 0.94377 0.91865 1.00484 1.00221 0.93580 0.91730 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.48 71.98 0.61 -1.86 16 2 C -0.06 -1.37 0.77 -52.18 -0.04 -1.41 16 3 C -0.15 -3.35 7.78 71.98 0.56 -2.79 16 4 C -0.10 -2.13 4.73 30.59 0.14 -1.99 16 5 C -0.11 -2.78 5.65 30.60 0.17 -2.61 16 6 C -0.14 -4.71 5.54 30.60 0.17 -4.55 16 7 C 0.07 2.96 2.34 30.59 0.07 3.03 16 8 H 0.04 1.77 6.07 -2.39 -0.01 1.76 16 9 O -0.40 -21.12 9.97 -148.98 -1.49 -22.60 16 10 C 0.20 11.79 4.81 71.24 0.34 12.13 16 11 C -0.63 -39.13 9.43 25.60 0.24 -38.88 16 12 H 0.05 3.28 7.81 -2.91 -0.02 3.26 16 13 C -0.03 -1.74 5.46 84.65 0.46 -1.27 16 14 N -0.93 -58.60 13.65 21.45 0.29 -58.31 16 15 Si 1.13 51.62 29.90 68.60 2.05 53.67 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 19 C -0.10 -3.10 4.38 30.59 0.13 -2.96 16 20 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 21 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 22 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.04 1.17 4.81 -2.38 -0.01 1.16 16 24 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 1.61 6.43 -2.39 -0.02 1.59 16 30 H 0.04 1.46 7.87 -2.39 -0.02 1.44 16 31 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 32 H -0.02 -1.35 7.95 -2.38 -0.02 -1.37 16 33 H -0.02 -1.19 7.74 -2.39 -0.02 -1.21 16 34 H 0.26 16.34 7.22 -92.71 -0.67 15.67 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -69.72 279.67 4.84 -64.88 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 1.12 Total: 5.53 kcal Atomic # 6 Polarization: -46.03 SS G_CDS: 2.87 Total: -43.16 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 0.29 Total: -58.31 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -1.49 Total: -22.60 kcal Atomic # 14 Polarization: 51.62 SS G_CDS: 2.05 Total: 53.67 kcal Total: -69.72 4.84 -64.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205621615.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.951 kcal (2) G-P(sol) polarization free energy of solvation -69.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds