Wall clock time and date at job start Mon Mar 30 2020 17:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00306 * 2 1 4 4 H 1.48494 * 109.47643 * 239.99973 * 3 2 1 5 5 H 1.48505 * 109.46875 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47253 * 119.99787 * 3 2 1 7 7 C 1.37876 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00393 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99905 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47160 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47150 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47277 * 179.97438 * 11 10 9 13 13 O 1.42896 * 109.47390 * 179.97438 * 12 11 10 14 14 C 1.42897 * 114.00214 * 180.02562 * 13 12 11 15 15 C 1.53840 * 113.65993 * 111.00173 * 14 13 12 16 16 C 1.51772 * 86.69146 * 89.80953 * 15 14 13 17 17 O 1.20761 * 135.75309 * 205.16017 * 16 15 14 18 18 C 1.51582 * 88.46571 * 25.08000 * 16 15 14 19 19 H 0.97005 * 119.99903 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.47779 * 59.99652 * 9 7 2 21 21 H 1.09010 * 109.46905 * 299.99516 * 9 7 2 22 22 H 1.09000 * 109.47482 * 59.99486 * 10 9 7 23 23 H 1.09001 * 109.47235 * 299.99098 * 10 9 7 24 24 H 1.09000 * 109.47045 * 59.99589 * 11 10 9 25 25 H 1.09001 * 109.47013 * 299.99481 * 11 10 9 26 26 H 1.09000 * 109.47114 * 60.00004 * 12 11 10 27 27 H 1.08996 * 109.47110 * 300.00300 * 12 11 10 28 28 H 1.09002 * 112.88131 * 339.66852 * 14 13 12 29 29 H 1.08997 * 113.67238 * 204.24719 * 15 14 13 30 30 H 1.09009 * 113.66355 * 335.31371 * 15 14 13 31 31 H 1.09004 * 113.66715 * 220.46248 * 18 16 15 32 32 H 1.08995 * 113.67024 * 89.38510 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4744 -6.1501 0.0005 13 8 1.7599 -7.3876 0.0017 14 6 2.5998 -8.5437 0.0018 15 6 2.5550 -9.3392 1.3178 16 6 1.4095 -10.1223 0.7030 17 8 0.4675 -10.7506 1.1229 18 6 1.9588 -9.7726 -0.6658 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5572 -0.8896 21 1 0.6240 -2.5567 0.8904 22 1 2.8720 -3.6043 0.8905 23 1 2.8718 -3.6044 -0.8895 24 1 0.8532 -5.0451 -0.8885 25 1 0.8539 -5.0446 0.8915 26 1 3.1017 -6.0923 0.8901 27 1 3.1004 -6.0924 -0.8898 28 1 3.6105 -8.3333 -0.3479 29 1 3.4477 -9.9382 1.4977 30 1 2.2636 -8.7408 2.1811 31 1 1.1887 -9.5221 -1.3954 32 1 2.6840 -10.4933 -1.0436 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224690522.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:09:05 Heat of formation + Delta-G solvation = -78.057426 kcal Electronic energy + Delta-G solvation = -13310.455021 eV Core-core repulsion = 10850.631426 eV Total energy + Delta-G solvation = -2459.823595 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.28168 -37.98585 -35.58558 -34.14311 -32.20974 -28.67408 -26.44390 -24.85312 -23.31272 -21.80816 -20.12262 -19.18499 -16.96788 -16.33766 -16.14782 -15.91145 -15.22672 -15.02293 -14.50438 -14.07262 -13.80211 -12.72348 -12.66174 -12.33841 -11.93498 -11.83045 -11.46028 -11.10499 -11.06601 -10.70481 -10.57748 -10.44120 -9.71101 -9.64059 -9.57840 -9.33051 -9.06653 -8.33848 -5.98792 -4.01629 1.71404 3.33471 3.35636 3.38102 3.40508 3.68211 4.13790 4.46560 4.52359 4.85028 5.06475 5.10234 5.29750 5.31763 5.36849 5.39939 5.47011 5.61269 5.69283 6.06088 6.10952 6.43037 6.74467 6.88251 7.05345 7.23762 7.27516 7.68538 7.83336 8.01351 8.43209 9.05466 9.62318 11.12531 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.085858 B = 0.004101 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.040530 B = 6825.898028 C = 6969.442055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.118 4.118 12 C 0.063 3.937 13 O -0.369 6.369 14 C 0.074 3.926 15 C -0.217 4.217 16 C 0.369 3.631 17 O -0.430 6.430 18 C -0.196 4.196 19 H 0.261 0.739 20 H 0.016 0.984 21 H 0.016 0.984 22 H 0.048 0.952 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.094 0.906 29 H 0.124 0.876 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.624 -17.391 -0.577 18.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.156 4.156 12 C -0.013 4.013 13 O -0.288 6.288 14 C 0.015 3.985 15 C -0.255 4.255 16 C 0.242 3.758 17 O -0.301 6.301 18 C -0.234 4.234 19 H 0.071 0.929 20 H 0.035 0.965 21 H 0.035 0.965 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.142 0.858 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.747 -17.605 -0.348 18.857 hybrid contribution 0.779 1.095 -0.017 1.344 sum 7.526 -16.510 -0.365 18.149 Atomic orbital electron populations 1.69959 1.06069 1.26710 1.50722 1.25031 0.94848 0.99255 0.95341 0.86655 0.79577 0.83156 0.78583 1.20252 1.21278 1.20257 1.21229 0.92978 0.91148 1.50752 0.92761 1.19092 0.93997 0.91172 0.97367 1.21578 0.99194 0.93364 1.00340 1.21669 0.98125 0.92885 1.02912 1.22834 0.95509 0.82932 1.00044 1.87932 1.33184 1.13353 1.94341 1.22525 0.95035 0.86069 0.94915 1.24649 1.00099 0.99683 1.01041 1.25585 0.83662 0.73099 0.93436 1.90420 1.28284 1.32816 1.78572 1.24304 1.02523 0.97371 0.99180 0.92932 0.96519 0.96521 0.93286 0.93265 0.91588 0.91626 0.93215 0.93099 0.88825 0.85823 0.88192 0.87970 0.85484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.16 5.15 -26.73 -0.14 -2.30 16 11 C -0.12 -2.03 5.58 -26.73 -0.15 -2.18 16 12 C 0.06 0.85 5.78 37.16 0.21 1.07 16 13 O -0.37 -5.00 10.28 -35.23 -0.36 -5.36 16 14 C 0.07 0.68 4.38 -25.94 -0.11 0.57 16 15 C -0.22 -1.83 7.90 -26.92 -0.21 -2.04 16 16 C 0.37 4.05 9.08 -28.16 -0.26 3.80 16 17 O -0.43 -6.37 17.99 6.00 0.11 -6.27 16 18 C -0.20 -1.60 7.89 -27.01 -0.21 -1.81 16 19 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 20 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 21 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 22 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 23 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.66 7.88 -51.93 -0.41 0.25 16 29 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.10 0.95 8.14 -51.92 -0.42 0.53 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 279.36 15.07 4.21 4.21 Total: -1.00 -32.56 279.36 -6.77 -39.33 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: -5.02 Total: -5.95 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -1.42 Total: -16.17 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.74 Total: -26.46 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -0.25 Total: -11.63 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.56 -6.77 -39.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690522.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.727 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds