Wall clock time and date at job start Mon Mar 30 2020 17:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00306 * 2 1 4 4 H 1.48494 * 109.47643 * 239.99973 * 3 2 1 5 5 H 1.48505 * 109.46875 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47253 * 119.99787 * 3 2 1 7 7 C 1.37876 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00393 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99905 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47160 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47150 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47277 * 179.97438 * 11 10 9 13 13 O 1.42896 * 109.47390 * 179.97438 * 12 11 10 14 14 C 1.42897 * 114.00214 * 180.02562 * 13 12 11 15 15 C 1.53840 * 113.65993 * 111.00173 * 14 13 12 16 16 C 1.51772 * 86.69146 * 89.80953 * 15 14 13 17 17 O 1.20761 * 135.75309 * 205.16017 * 16 15 14 18 18 C 1.51582 * 88.46571 * 25.08000 * 16 15 14 19 19 H 0.97005 * 119.99903 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.47779 * 59.99652 * 9 7 2 21 21 H 1.09010 * 109.46905 * 299.99516 * 9 7 2 22 22 H 1.09000 * 109.47482 * 59.99486 * 10 9 7 23 23 H 1.09001 * 109.47235 * 299.99098 * 10 9 7 24 24 H 1.09000 * 109.47045 * 59.99589 * 11 10 9 25 25 H 1.09001 * 109.47013 * 299.99481 * 11 10 9 26 26 H 1.09000 * 109.47114 * 60.00004 * 12 11 10 27 27 H 1.08996 * 109.47110 * 300.00300 * 12 11 10 28 28 H 1.09002 * 112.88131 * 339.66852 * 14 13 12 29 29 H 1.08997 * 113.67238 * 204.24719 * 15 14 13 30 30 H 1.09009 * 113.66355 * 335.31371 * 15 14 13 31 31 H 1.09004 * 113.66715 * 220.46248 * 18 16 15 32 32 H 1.08995 * 113.67024 * 89.38510 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4744 -6.1501 0.0005 13 8 1.7599 -7.3876 0.0017 14 6 2.5998 -8.5437 0.0018 15 6 2.5550 -9.3392 1.3178 16 6 1.4095 -10.1223 0.7030 17 8 0.4675 -10.7506 1.1229 18 6 1.9588 -9.7726 -0.6658 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5572 -0.8896 21 1 0.6240 -2.5567 0.8904 22 1 2.8720 -3.6043 0.8905 23 1 2.8718 -3.6044 -0.8895 24 1 0.8532 -5.0451 -0.8885 25 1 0.8539 -5.0446 0.8915 26 1 3.1017 -6.0923 0.8901 27 1 3.1004 -6.0924 -0.8898 28 1 3.6105 -8.3333 -0.3479 29 1 3.4477 -9.9382 1.4977 30 1 2.2636 -8.7408 2.1811 31 1 1.1887 -9.5221 -1.3954 32 1 2.6840 -10.4933 -1.0436 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224690522.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:09:04 Heat of formation + Delta-G solvation = -99.092010 kcal Electronic energy + Delta-G solvation = -13311.367149 eV Core-core repulsion = 10850.631426 eV Total energy + Delta-G solvation = -2460.735723 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.09798 -38.96707 -36.84600 -35.64052 -34.09139 -30.41708 -27.09898 -26.62203 -24.15117 -23.41463 -21.76601 -20.00949 -18.43599 -17.80423 -17.06484 -16.92843 -16.51448 -16.24656 -15.93583 -15.22191 -15.11212 -14.40498 -13.77315 -13.67271 -13.31943 -13.06128 -12.82195 -12.70710 -12.36467 -12.24619 -12.16197 -11.79459 -11.43264 -11.32314 -11.08489 -10.55026 -10.51567 -10.42353 -8.19177 -6.31201 0.90686 1.41083 1.44594 1.52530 2.40981 2.54352 2.92187 3.13902 3.44321 3.80311 4.10179 4.13296 4.20335 4.44591 4.52926 4.57510 4.61399 4.65461 4.77796 4.88450 4.89079 4.95008 5.17829 5.27242 5.30863 5.54124 5.76118 5.86546 6.24523 6.30207 6.47492 6.86704 7.38546 8.92756 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.085858 B = 0.004101 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.040530 B = 6825.898028 C = 6969.442055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.019 3.981 10 C -0.093 4.093 11 C -0.115 4.115 12 C 0.073 3.927 13 O -0.399 6.399 14 C 0.064 3.936 15 C -0.204 4.204 16 C 0.349 3.651 17 O -0.483 6.483 18 C -0.182 4.182 19 H 0.263 0.737 20 H -0.011 1.011 21 H -0.013 1.013 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.130 0.870 29 H 0.164 0.836 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.505 -17.707 -1.001 20.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.083 0.917 9 C -0.018 4.018 10 C -0.131 4.131 11 C -0.152 4.152 12 C -0.003 4.003 13 O -0.319 6.319 14 C 0.006 3.994 15 C -0.242 4.242 16 C 0.227 3.773 17 O -0.358 6.358 18 C -0.219 4.219 19 H 0.072 0.928 20 H 0.007 0.993 21 H 0.006 0.994 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.147 0.853 29 H 0.182 0.818 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.659 -17.930 -0.779 20.381 hybrid contribution -0.151 1.154 0.109 1.169 sum 9.508 -16.776 -0.670 19.295 Atomic orbital electron populations 1.70111 1.08004 1.27851 1.51725 1.26052 0.95766 1.03625 0.94707 0.85458 0.78209 0.77804 0.79320 1.18917 1.21046 1.19009 1.21723 0.93739 0.92301 1.50530 0.91697 1.19047 0.94628 0.93490 0.94607 1.21344 0.97940 0.92499 1.01290 1.21500 0.98556 0.93485 1.01689 1.22605 0.94089 0.81819 1.01767 1.87880 1.35002 1.14374 1.94638 1.22835 0.96143 0.84762 0.95628 1.24741 1.00309 0.99050 1.00099 1.26435 0.83240 0.71822 0.95831 1.90391 1.30367 1.35242 1.79830 1.24408 1.02771 0.97494 0.97236 0.92811 0.99290 0.99443 0.92310 0.92086 0.92731 0.93114 0.91655 0.91070 0.85279 0.81825 0.89533 0.89087 0.81287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.07 13.29 21.45 0.28 -57.79 16 2 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 3 Si 0.97 44.20 29.54 68.60 2.03 46.22 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.55 -31.18 9.11 25.60 0.23 -30.94 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.04 4.97 29.85 0.15 1.19 16 10 C -0.09 -3.71 5.15 30.60 0.16 -3.55 16 11 C -0.11 -3.90 5.58 30.60 0.17 -3.73 16 12 C 0.07 1.81 5.78 71.98 0.42 2.23 16 13 O -0.40 -10.09 10.28 -148.98 -1.53 -11.62 16 14 C 0.06 0.98 4.38 31.11 0.14 1.11 16 15 C -0.20 -2.89 7.90 30.47 0.24 -2.65 16 16 C 0.35 7.33 9.08 29.67 0.27 7.60 16 17 O -0.48 -14.70 17.99 -1.45 -0.03 -14.73 16 18 C -0.18 -2.47 7.89 30.41 0.24 -2.23 16 19 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 20 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 21 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 22 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 23 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.13 1.12 7.88 -2.39 -0.02 1.11 16 29 H 0.16 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.17 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -73.14 279.36 4.30 -68.84 By element: Atomic # 1 Polarization: -1.25 SS G_CDS: 1.08 Total: -0.18 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: 2.47 Total: -30.75 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.28 Total: -57.79 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -1.56 Total: -26.35 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -73.14 4.30 -68.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224690522.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.256 kcal (2) G-P(sol) polarization free energy of solvation -73.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds