Wall clock time and date at job start Mon Mar 30 2020 17:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47052 * 2 1 4 4 H 1.08998 * 109.46932 * 315.81898 * 3 2 1 5 5 C 1.50697 * 109.47076 * 195.82074 * 3 2 1 6 6 H 1.08000 * 120.00112 * 239.99235 * 5 3 2 7 7 C 1.37879 * 120.00099 * 59.99839 * 5 3 2 8 8 N 1.31517 * 120.00045 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99995 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46999 * 90.00338 * 9 7 5 11 11 H 1.48499 * 109.46826 * 209.99851 * 9 7 5 12 12 H 1.48498 * 109.47182 * 330.00149 * 9 7 5 13 13 N 1.46899 * 109.47368 * 75.81769 * 3 2 1 14 14 C 1.46891 * 111.00282 * 245.64748 * 13 3 2 15 15 C 1.50707 * 115.54718 * 310.24264 * 14 13 3 16 16 N 1.34775 * 120.00207 * 331.28134 * 15 14 13 17 17 O 1.21279 * 119.99784 * 151.28385 * 15 14 13 18 18 C 1.52996 * 117.50093 * 164.57619 * 14 13 3 19 19 C 1.52994 * 117.50268 * 95.91368 * 14 13 3 20 20 H 1.08996 * 109.46940 * 73.16482 * 1 2 3 21 21 H 1.09004 * 109.46617 * 193.16282 * 1 2 3 22 22 H 1.08999 * 109.47093 * 313.15826 * 1 2 3 23 23 H 1.08996 * 109.47349 * 239.99852 * 2 1 3 24 24 H 1.09002 * 109.47453 * 119.99796 * 2 1 3 25 25 H 0.97000 * 120.00288 * 179.97438 * 8 7 5 26 26 H 1.00904 * 110.99779 * 121.69047 * 13 3 2 27 27 H 0.97001 * 119.99891 * 4.32735 * 16 15 14 28 28 H 0.96994 * 120.00217 * 184.33274 * 16 15 14 29 29 H 1.09001 * 117.49805 * 359.97438 * 18 14 13 30 30 H 1.09002 * 117.50272 * 145.01834 * 18 14 13 31 31 H 1.09005 * 117.50317 * 214.98241 * 19 14 13 32 32 H 1.09000 * 117.50123 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.4662 2.0307 -0.7162 5 6 3.4962 1.4605 -0.3873 6 1 4.2318 1.8591 0.2956 7 6 3.8895 0.9681 -1.6137 8 7 2.9937 0.4833 -2.4457 9 14 5.6946 0.9910 -2.0941 10 1 6.3389 -0.2738 -1.6580 11 1 5.8127 1.1240 -3.5684 12 1 6.3669 2.1411 -1.4379 13 7 1.8833 2.0174 1.3427 14 6 0.9064 3.1144 1.3351 15 6 1.1114 4.1598 0.2692 16 7 2.3503 4.4123 -0.1977 17 8 0.1616 4.7740 -0.1684 18 6 0.3564 3.5800 2.6848 19 6 -0.5336 2.7808 1.7297 20 1 -0.3633 0.2976 -0.9836 21 1 -0.3633 -1.0007 0.2340 22 1 -0.3633 0.7029 0.7496 23 1 1.8933 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 3.2703 0.1372 -3.3086 26 1 2.7710 2.3262 1.7097 27 1 3.1011 3.8786 0.1060 28 1 2.4910 5.1277 -0.8374 29 1 0.7192 3.0720 3.5783 30 1 0.1425 4.6424 2.8016 31 1 -1.3329 3.3177 1.2186 32 1 -0.7564 1.7472 1.9946 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152493.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:09:22 Heat of formation + Delta-G solvation = -20.573880 kcal Electronic energy + Delta-G solvation = -14952.256299 eV Core-core repulsion = 12527.218129 eV Total energy + Delta-G solvation = -2425.038171 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.54247 -36.48183 -34.74836 -32.95174 -31.74681 -30.14263 -26.28984 -23.36763 -22.79207 -22.19600 -19.65583 -18.75319 -17.30096 -16.45827 -16.22361 -14.88182 -14.57315 -14.00419 -13.77210 -13.65349 -12.96428 -12.53969 -12.12369 -11.79909 -11.24296 -11.13196 -11.00917 -10.91196 -10.50445 -10.12782 -9.92063 -9.80293 -9.53683 -9.28713 -9.04207 -8.95648 -8.49313 -7.50575 -6.14441 -4.26884 3.07145 3.19456 3.27111 3.27922 4.09863 4.24959 4.35631 4.81372 5.14370 5.39392 5.47954 5.66254 5.93517 6.04572 6.26438 6.40070 6.50097 6.58685 6.67046 7.05985 7.14809 7.33412 7.39372 7.46543 7.62764 7.83451 7.99035 8.07887 8.23464 8.47774 8.85723 8.88430 9.40583 10.88558 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.032393 B = 0.011725 C = 0.010027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.165398 B = 2387.461173 C = 2791.776152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.103 4.103 3 C 0.214 3.786 4 H 0.025 0.975 5 C -0.543 4.543 6 H 0.059 0.941 7 C 0.070 3.930 8 N -0.875 5.875 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.647 5.647 14 C 0.014 3.986 15 C 0.538 3.462 16 N -0.840 5.840 17 O -0.568 6.568 18 C -0.152 4.152 19 C -0.135 4.135 20 H 0.037 0.963 21 H 0.027 0.973 22 H 0.053 0.947 23 H 0.089 0.911 24 H 0.034 0.966 25 H 0.263 0.737 26 H 0.335 0.665 27 H 0.410 0.590 28 H 0.393 0.607 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.939 3.509 6.529 7.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.142 4.142 3 C 0.107 3.893 4 H 0.043 0.957 5 C -0.581 4.581 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.512 5.512 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.279 5.279 14 C -0.082 4.082 15 C 0.321 3.679 16 N -0.402 5.402 17 O -0.447 6.447 18 C -0.190 4.190 19 C -0.173 4.173 20 H 0.056 0.944 21 H 0.046 0.954 22 H 0.072 0.928 23 H 0.107 0.893 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.154 0.846 27 H 0.242 0.758 28 H 0.222 0.778 29 H 0.123 0.877 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.100 3.224 6.372 7.443 hybrid contribution 2.042 0.548 -1.101 2.384 sum -0.058 3.772 5.271 6.482 Atomic orbital electron populations 1.21967 0.99354 0.99111 1.00467 1.21506 0.92112 0.99146 1.01443 1.19279 0.95299 0.92255 0.82485 0.95743 1.21505 0.92470 1.42627 1.01542 0.92315 1.24922 0.97388 0.94726 0.96344 1.69911 1.33067 1.39631 1.08599 0.86604 0.85171 0.78539 0.77688 1.20557 1.21266 1.19920 1.60700 1.12003 1.26894 1.28327 1.21575 0.97659 0.93625 0.95368 1.20418 0.82769 0.82362 0.82350 1.43862 1.10245 1.38354 1.47782 1.90636 1.41054 1.52448 1.60515 1.23048 1.03303 1.00133 0.92557 1.23110 0.91798 1.01280 1.01118 0.94383 0.95413 0.92842 0.89276 0.94708 0.92672 0.84585 0.75750 0.77766 0.87745 0.89061 0.88275 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.89 37.16 0.37 -2.82 16 2 C -0.10 -2.43 5.47 -26.73 -0.15 -2.58 16 3 C 0.21 4.96 1.29 -68.86 -0.09 4.87 16 4 H 0.02 0.66 6.31 -51.93 -0.33 0.33 16 5 C -0.54 -13.19 7.13 -34.44 -0.25 -13.44 16 6 H 0.06 1.36 7.30 -52.49 -0.38 0.97 16 7 C 0.07 1.79 5.22 -17.82 -0.09 1.70 16 8 N -0.88 -23.73 11.34 55.43 0.63 -23.10 16 9 Si 0.89 19.77 29.54 -169.99 -5.02 14.74 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 N -0.65 -12.62 6.05 -95.42 -0.58 -13.19 16 14 C 0.01 0.25 2.30 -132.76 -0.31 -0.05 16 15 C 0.54 10.91 6.33 -10.98 -0.07 10.84 16 16 N -0.84 -15.19 8.38 31.22 0.26 -14.93 16 17 O -0.57 -13.05 17.11 5.56 0.10 -12.95 16 18 C -0.15 -2.28 10.17 -26.70 -0.27 -2.55 16 19 C -0.14 -2.28 8.72 -26.70 -0.23 -2.51 16 20 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.05 1.05 4.15 -51.93 -0.22 0.84 16 23 H 0.09 2.35 5.82 -51.93 -0.30 2.05 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.33 6.19 7.51 -39.29 -0.29 5.90 16 27 H 0.41 7.34 6.17 -40.82 -0.25 7.08 16 28 H 0.39 6.42 8.93 -40.82 -0.36 6.05 16 29 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.10 1.72 7.68 -51.93 -0.40 1.32 16 32 H 0.11 1.79 6.24 -51.93 -0.32 1.46 16 LS Contribution 259.37 15.07 3.91 3.91 Total: -1.00 -28.33 259.37 -5.90 -34.23 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -4.11 Total: 17.83 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -1.09 Total: -6.54 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.31 Total: -51.22 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.10 Total: -12.95 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.33 -5.90 -34.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152493.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.661 kcal (2) G-P(sol) polarization free energy of solvation -28.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds