Wall clock time and date at job start Mon Mar 30 2020 17:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36930 * 120.00539 * 2 1 4 4 H 1.07995 * 120.00584 * 202.11659 * 3 2 1 5 5 C 1.38816 * 119.99756 * 22.11614 * 3 2 1 6 6 N 1.31624 * 119.99892 * 11.27996 * 5 3 2 7 7 Si 1.86793 * 120.00143 * 191.28348 * 5 3 2 8 8 H 1.48500 * 109.47138 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47612 * 119.99706 * 7 5 3 10 10 H 1.48507 * 109.47340 * 239.99916 * 7 5 3 11 11 C 1.46504 * 119.99808 * 180.02562 * 2 1 3 12 12 C 1.50696 * 109.47090 * 270.00087 * 11 2 1 13 13 O 1.34635 * 125.85512 * 270.33330 * 12 11 2 14 14 C 1.34266 * 109.53684 * 180.15370 * 13 12 11 15 15 C 1.34477 * 108.57997 * 359.56191 * 14 13 12 16 16 C 1.35031 * 125.85578 * 89.99986 * 12 11 2 17 17 S 1.76202 * 126.63702 * 0.02562 * 16 12 11 18 18 H 1.09005 * 109.47084 * 274.53340 * 1 2 3 19 19 H 1.08996 * 109.47190 * 34.53044 * 1 2 3 20 20 H 1.09001 * 109.47213 * 154.53684 * 1 2 3 21 21 H 0.97004 * 119.99977 * 180.02562 * 6 5 3 22 22 H 1.08995 * 109.47347 * 150.00183 * 11 2 1 23 23 H 1.08998 * 109.47004 * 29.99815 * 11 2 1 24 24 H 1.08003 * 125.70834 * 179.82400 * 14 13 12 25 25 H 1.07995 * 126.56669 * 180.26885 * 15 14 13 26 26 H 1.34498 * 102.99701 * 269.97340 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1701 1.2202 -0.3521 5 6 1.5323 2.3438 0.4526 6 7 0.3798 2.2713 1.0842 7 14 2.3370 4.0048 0.1653 8 1 3.6179 3.8151 -0.5617 9 1 1.4312 4.8608 -0.6421 10 1 2.6022 4.6591 1.4719 11 6 2.1974 -1.2688 -0.0006 12 6 2.4486 -1.7045 1.4200 13 8 3.5220 -1.3817 2.1658 14 6 3.4127 -1.9474 3.3786 15 6 2.2580 -2.6348 3.4282 16 6 1.6326 -2.4803 2.1654 17 16 0.0892 -3.1677 1.6651 18 1 -0.3633 0.0812 1.0245 19 1 -0.3633 0.8466 -0.5825 20 1 -0.3634 -0.9278 -0.4418 21 1 -0.0519 3.0805 1.4001 22 1 3.1498 -1.1383 -0.5143 23 1 1.6083 -2.0282 -0.5147 24 1 4.1299 -1.8610 4.1814 25 1 1.8794 -3.1969 4.2691 26 1 -0.7939 -2.2162 2.0166 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237190839.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:06:51 Heat of formation + Delta-G solvation = 41.520058 kcal Electronic energy + Delta-G solvation = -12360.380799 eV Core-core repulsion = 10147.236338 eV Total energy + Delta-G solvation = -2213.144461 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.85107 -35.76471 -32.49264 -31.70393 -29.37912 -26.18766 -25.46545 -21.68525 -21.40985 -20.05171 -17.44018 -16.80700 -16.20664 -15.40011 -14.85210 -14.12219 -13.63977 -13.40389 -12.89396 -12.61331 -12.26587 -11.81916 -11.13907 -10.98514 -10.80236 -10.75530 -10.48882 -10.10122 -10.01322 -9.18559 -8.70305 -7.91899 -7.59279 -6.99123 -5.88148 -3.34723 2.02737 2.41908 2.86679 3.30276 3.37883 3.40480 3.50816 3.77518 4.40033 5.23180 5.41650 5.44960 5.54683 5.82712 6.18116 6.28215 6.39797 6.65767 6.70013 6.89763 7.25219 7.57169 7.69064 7.70073 8.21974 9.06420 9.66420 10.14276 11.15966 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.036904 B = 0.010874 C = 0.009489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.538913 B = 2574.235803 C = 2950.170992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.579 5.579 3 C -0.261 4.261 4 H 0.076 0.924 5 C 0.005 3.995 6 N -0.904 5.904 7 Si 0.911 3.089 8 H -0.275 1.275 9 H -0.287 1.287 10 H -0.289 1.289 11 C 0.204 3.796 12 C 0.076 3.924 13 O -0.166 6.166 14 C -0.066 4.066 15 C -0.181 4.181 16 C -0.225 4.225 17 S -0.098 6.098 18 H 0.023 0.977 19 H 0.050 0.950 20 H 0.010 0.990 21 H 0.254 0.746 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.195 0.805 25 H 0.144 0.856 26 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.494 -8.299 1.471 8.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.299 5.299 3 C -0.391 4.391 4 H 0.094 0.906 5 C -0.194 4.194 6 N -0.547 5.547 7 Si 0.741 3.259 8 H -0.200 1.200 9 H -0.214 1.214 10 H -0.216 1.216 11 C 0.075 3.925 12 C 0.016 3.984 13 O -0.060 6.060 14 C -0.135 4.135 15 C -0.203 4.203 16 C -0.340 4.340 17 S 0.057 5.943 18 H 0.041 0.959 19 H 0.069 0.931 20 H 0.028 0.972 21 H 0.065 0.935 22 H 0.086 0.914 23 H 0.107 0.893 24 H 0.211 0.789 25 H 0.162 0.838 26 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 1.920 -8.466 1.074 8.747 hybrid contribution 0.418 2.159 1.232 2.521 sum 2.338 -6.307 2.306 7.111 Atomic orbital electron populations 1.20947 0.81757 0.96504 0.99228 1.44299 1.02310 1.00143 1.83145 1.19401 0.98475 0.84742 1.36462 0.90593 1.25149 0.97512 0.99040 0.97701 1.70101 1.17502 1.27378 1.39767 0.86076 0.78815 0.83505 0.77529 1.19964 1.21358 1.21602 1.20041 0.97795 0.89707 0.85004 1.25635 0.84053 0.90931 0.97770 1.84238 1.40771 1.58578 1.22436 1.23775 1.00936 1.00569 0.88173 1.21791 0.96248 1.04351 0.97930 1.21101 1.00997 1.13441 0.98433 1.85000 0.99262 1.27851 1.82174 0.95901 0.93112 0.97171 0.93542 0.91425 0.89259 0.78869 0.83850 0.96874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.94 9.01 59.84 0.54 4.48 15 2 N -0.58 -14.54 2.91 -182.51 -0.53 -15.07 15 3 C -0.26 -7.15 9.68 -15.06 -0.15 -7.30 15 4 H 0.08 2.02 7.84 -52.49 -0.41 1.61 15 5 C 0.01 0.14 5.13 -17.43 -0.09 0.05 15 6 N -0.90 -26.38 10.57 55.49 0.59 -25.80 15 7 Si 0.91 21.77 29.57 -169.99 -5.03 16.74 15 8 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 9 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 11 C 0.20 4.27 6.04 -5.19 -0.03 4.24 15 12 C 0.08 1.61 6.94 -35.45 -0.25 1.36 15 13 O -0.17 -3.46 10.66 4.90 0.05 -3.41 15 14 C -0.07 -1.13 12.07 29.40 0.36 -0.78 15 15 C -0.18 -3.21 10.90 -39.56 -0.43 -3.64 15 16 C -0.22 -4.46 6.43 -39.37 -0.25 -4.72 15 17 S -0.10 -1.74 25.64 -107.50 -2.76 -4.50 15 18 H 0.02 0.62 7.41 -51.93 -0.38 0.23 15 19 H 0.05 1.33 7.19 -51.93 -0.37 0.96 15 20 H 0.01 0.21 7.84 -51.93 -0.41 -0.20 15 21 H 0.25 7.18 8.31 -40.82 -0.34 6.84 15 22 H 0.07 1.33 8.03 -51.93 -0.42 0.92 15 23 H 0.09 1.67 7.52 -51.93 -0.39 1.28 15 24 H 0.19 2.42 8.06 -52.48 -0.42 2.00 15 25 H 0.14 2.14 8.06 -52.49 -0.42 1.71 15 26 H 0.07 1.29 9.07 97.61 0.89 2.17 15 LS Contribution 246.19 15.07 3.71 3.71 Total: -1.00 -30.33 246.19 -5.75 -36.08 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: -1.48 Total: -1.46 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -0.30 Total: -6.29 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.06 Total: -40.87 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: 0.05 Total: -3.41 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.76 Total: -4.50 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.33 -5.75 -36.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237190839.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.598 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds