Wall clock time and date at job start Mon Mar 30 2020 17:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00550 * 2 1 4 4 C 1.52999 * 109.47592 * 180.02562 * 3 2 1 5 5 C 1.52997 * 110.27487 * 302.09541 * 4 3 2 6 6 C 1.54602 * 110.38911 * 64.23823 * 4 3 2 7 7 C 1.54935 * 102.92042 * 140.91978 * 6 4 3 8 8 N 1.48532 * 103.22762 * 322.58216 * 7 6 4 9 9 C 1.46902 * 111.00121 * 159.71896 * 8 7 6 10 10 C 1.50706 * 109.46577 * 52.60620 * 9 8 7 11 11 H 1.07999 * 120.00196 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00338 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99426 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47361 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47264 * 120.00115 * 14 12 10 17 17 H 1.48500 * 109.46969 * 239.99720 * 14 12 10 18 18 C 1.47904 * 105.81774 * 39.20877 * 8 7 6 19 19 H 1.08991 * 109.47603 * 179.97438 * 1 2 3 20 20 H 1.09005 * 109.46481 * 299.99653 * 1 2 3 21 21 H 1.08998 * 109.47035 * 59.99182 * 1 2 3 22 22 H 1.09003 * 109.46803 * 60.00300 * 3 2 1 23 23 H 1.09002 * 109.47314 * 300.00624 * 3 2 1 24 24 H 1.09001 * 109.47128 * 297.90887 * 5 4 3 25 25 H 1.09008 * 109.47271 * 57.90714 * 5 4 3 26 26 H 1.08997 * 109.47316 * 177.90902 * 5 4 3 27 27 H 1.09008 * 110.71971 * 259.27708 * 6 4 3 28 28 H 1.08995 * 110.72723 * 22.37835 * 6 4 3 29 29 H 1.09001 * 110.66626 * 204.14988 * 7 6 4 30 30 H 1.09002 * 110.66990 * 81.01865 * 7 6 4 31 31 H 1.09000 * 109.46894 * 292.60853 * 9 8 7 32 32 H 1.09000 * 109.47263 * 172.60419 * 9 8 7 33 33 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 34 34 H 1.08999 * 109.91578 * 94.02228 * 18 8 7 35 35 H 1.08996 * 109.91639 * 215.31408 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5356 1.1845 -0.0006 5 6 4.0043 0.3823 1.2148 6 6 4.0222 0.5143 -1.3061 7 6 5.3084 1.3090 -1.6449 8 7 4.9625 2.6990 -1.2518 9 6 6.1734 3.5042 -1.0438 10 6 7.0607 3.3996 -2.2575 11 1 6.7552 2.7959 -3.0993 12 6 8.2618 4.0757 -2.2936 13 7 8.6330 4.8121 -1.2691 14 14 9.3612 3.9467 -3.7983 15 1 8.7202 3.0636 -4.8055 16 1 9.5634 5.2976 -4.3809 17 1 10.6743 3.3760 -3.4045 18 6 4.1825 2.5819 -0.0006 19 1 -0.3634 -1.0275 -0.0005 20 1 -0.3632 0.5138 0.8901 21 1 -0.3633 0.5140 -0.8899 22 1 1.6888 1.8462 0.8901 23 1 1.6887 1.8464 -0.8899 24 1 3.7199 0.9059 2.1275 25 1 3.5388 -0.6033 1.2013 26 1 5.0883 0.2725 1.1817 27 1 4.2521 -0.5377 -1.1370 28 1 3.2790 0.6231 -2.0959 29 1 5.5250 1.2536 -2.7117 30 1 6.1522 0.9426 -1.0603 31 1 6.7092 3.1352 -0.1692 32 1 5.8945 4.5460 -0.8863 33 1 9.4778 5.2879 -1.2947 34 1 4.8434 2.6851 0.8599 35 1 3.4089 3.3492 0.0278 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381654607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:11:43 Heat of formation + Delta-G solvation = -51.268622 kcal Electronic energy + Delta-G solvation = -14746.556584 eV Core-core repulsion = 12358.301822 eV Total energy + Delta-G solvation = -2388.254762 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.18045 -37.17813 -33.69186 -31.96029 -29.13381 -27.39787 -27.19526 -25.67096 -23.83203 -22.42448 -20.01875 -18.79379 -16.38717 -16.07514 -15.73775 -15.49409 -14.85193 -14.06313 -13.89542 -13.45015 -13.00149 -12.69806 -12.48385 -12.06762 -11.81796 -11.42199 -11.33487 -11.21551 -10.94020 -10.69434 -10.46655 -10.34716 -10.15023 -10.06402 -9.78735 -9.54462 -9.05107 -8.45490 -7.26629 -6.02796 -4.04082 3.31423 3.38694 3.43640 3.82612 4.43955 4.95718 5.00924 5.05735 5.26874 5.27527 5.33451 5.41627 5.56946 5.58436 5.68849 5.80459 5.92503 5.94539 6.06516 6.25065 6.31680 6.47150 6.48466 6.61234 6.75485 6.82812 7.22298 7.25563 7.40978 7.77298 8.01750 8.23035 8.53786 9.04097 9.60542 11.08737 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.064433 B = 0.006358 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.453236 B = 4402.903806 C = 4536.857633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.079 3.921 4 C -0.070 4.070 5 C -0.132 4.132 6 C -0.109 4.109 7 C 0.053 3.947 8 N -0.517 5.517 9 C 0.183 3.817 10 C -0.512 4.512 11 H 0.064 0.936 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.897 3.103 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.285 1.285 18 C 0.045 3.955 19 H 0.081 0.919 20 H 0.037 0.963 21 H 0.039 0.961 22 H 0.045 0.955 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.039 0.961 31 H -0.007 1.007 32 H 0.031 0.969 33 H 0.261 0.739 34 H 0.043 0.957 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.458 -8.194 3.400 15.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.002 3.998 4 C -0.071 4.071 5 C -0.189 4.189 6 C -0.147 4.147 7 C -0.075 4.075 8 N -0.242 5.242 9 C 0.058 3.942 10 C -0.550 4.550 11 H 0.082 0.918 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.725 3.275 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.083 4.083 19 H 0.100 0.900 20 H 0.055 0.945 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.011 0.989 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.488 -7.960 3.056 15.121 hybrid contribution 0.971 0.025 -0.042 0.972 sum -11.517 -7.936 3.014 14.307 Atomic orbital electron populations 1.22687 0.81796 1.02260 0.99732 1.87875 1.18921 1.28503 1.95356 1.22641 0.93261 0.83977 0.99920 1.21442 0.92452 0.96470 0.96723 1.21795 1.00949 0.99911 0.96270 1.22579 0.98025 0.98427 0.95716 1.22977 0.94657 0.88707 1.01172 1.64863 1.22541 1.10779 1.26012 1.19906 0.85005 0.93106 0.96228 1.21262 1.02591 1.29160 1.02002 0.91779 1.24996 0.97915 0.95265 0.96380 1.69972 1.22487 1.31096 1.30188 0.86452 0.80299 0.77855 0.82898 1.19644 1.20982 1.21099 1.22873 0.97475 0.94221 0.93766 0.90025 0.94455 0.94275 0.93711 0.92864 0.93167 0.92078 0.92642 0.91754 0.91452 0.90522 0.94253 0.98949 0.95070 0.92983 0.93887 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.39 -5.25 9.75 -35.23 -0.34 -5.59 16 3 C 0.08 1.09 4.50 37.16 0.17 1.25 16 4 C -0.07 -1.11 0.77 -153.15 -0.12 -1.23 16 5 C -0.13 -1.91 8.07 37.16 0.30 -1.61 16 6 C -0.11 -1.82 5.96 -24.87 -0.15 -1.97 16 7 C 0.05 1.08 5.55 -1.90 -0.01 1.07 16 8 N -0.52 -11.60 5.39 -231.89 -1.25 -12.85 16 9 C 0.18 4.91 4.79 -4.97 -0.02 4.88 16 10 C -0.51 -14.59 8.56 -34.44 -0.29 -14.88 16 11 H 0.06 1.80 6.52 -52.49 -0.34 1.46 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 14 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 18 C 0.05 0.85 6.03 -2.76 -0.02 0.83 16 19 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 20 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 21 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.84 7.62 -51.92 -0.40 0.45 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.99 7.85 -51.92 -0.41 0.58 16 28 H 0.07 1.11 7.84 -51.93 -0.41 0.70 16 29 H 0.08 1.61 7.15 -51.93 -0.37 1.24 16 30 H 0.04 0.84 8.02 -51.93 -0.42 0.42 16 31 H -0.01 -0.21 7.81 -51.93 -0.41 -0.61 16 32 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.04 0.83 7.11 -51.93 -0.37 0.46 16 35 H 0.07 1.15 7.68 -51.93 -0.40 0.75 16 LS Contribution 280.99 15.07 4.23 4.23 Total: -1.00 -30.38 280.99 -6.80 -37.18 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -6.03 Total: -4.79 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 0.87 Total: -8.73 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: -0.51 Total: -39.12 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.34 Total: -5.59 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.38 -6.80 -37.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381654607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.084 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds