Wall clock time and date at job start Mon Mar 30 2020 17:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.54894 * 2 1 4 4 C 1.54986 * 110.61671 * 236.94635 * 2 1 3 5 5 C 1.54810 * 102.09650 * 278.52420 * 4 2 1 6 6 H 1.08996 * 110.60294 * 97.85158 * 5 4 2 7 7 N 1.46900 * 110.48978 * 220.44624 * 5 4 2 8 8 C 1.46889 * 110.99957 * 279.67297 * 7 5 4 9 9 C 1.53004 * 109.47447 * 179.97438 * 8 7 5 10 10 C 1.50694 * 109.47656 * 180.02562 * 9 8 7 11 11 H 1.08009 * 119.99572 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00058 * 180.27685 * 10 9 8 13 13 N 1.31510 * 119.99993 * 359.72645 * 12 10 9 14 14 Si 1.86808 * 119.99845 * 179.72374 * 12 10 9 15 15 H 1.48500 * 109.46866 * 90.00192 * 14 12 10 16 16 H 1.48498 * 109.47094 * 210.00111 * 14 12 10 17 17 H 1.48496 * 109.47000 * 330.00042 * 14 12 10 18 18 C 1.54103 * 104.18391 * 339.12238 * 5 4 2 19 19 H 1.09002 * 109.88143 * 117.39230 * 18 5 4 20 20 C 1.52999 * 109.88062 * 238.39356 * 18 5 4 21 21 O 1.43739 * 107.29676 * 357.96700 * 18 5 4 22 22 H 1.09010 * 109.47500 * 298.57846 * 1 2 3 23 23 H 1.09001 * 109.47314 * 58.57573 * 1 2 3 24 24 H 1.08999 * 109.47460 * 178.57340 * 1 2 3 25 25 H 1.09008 * 110.90859 * 160.32630 * 4 2 1 26 26 H 1.09001 * 110.91108 * 36.72418 * 4 2 1 27 27 H 1.00908 * 110.99730 * 155.72095 * 7 5 4 28 28 H 1.09000 * 109.47159 * 60.00263 * 8 7 5 29 29 H 1.09000 * 109.47754 * 300.00043 * 8 7 5 30 30 H 1.09000 * 109.46676 * 60.00029 * 9 8 7 31 31 H 1.08997 * 109.47189 * 300.00535 * 9 8 7 32 32 H 0.97006 * 119.99846 * 179.97438 * 13 12 10 33 33 H 1.09003 * 109.47028 * 53.94434 * 20 18 5 34 34 H 1.09000 * 109.47522 * 173.94474 * 20 18 5 35 35 H 1.09000 * 109.47232 * 293.95180 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0757 -0.7912 -1.2158 5 6 1.9800 -2.2546 -0.7201 6 1 1.0728 -2.7281 -1.0953 7 7 3.1654 -3.0166 -1.1347 8 6 3.0501 -3.4496 -2.5336 9 6 4.3008 -4.2377 -2.9284 10 6 4.1828 -4.6814 -4.3637 11 1 3.3038 -4.4263 -4.9372 12 6 5.1945 -5.4172 -4.9432 13 7 6.2649 -5.7274 -4.2449 14 14 5.0448 -5.9738 -6.7201 15 1 5.6235 -4.9383 -7.6135 16 1 5.7794 -7.2514 -6.9022 17 1 3.6125 -6.1740 -7.0570 18 6 1.9282 -2.1306 0.8151 19 1 0.9815 -2.5224 1.1870 20 6 3.0919 -2.9036 1.4390 21 8 2.0383 -0.7336 1.1350 22 1 -0.3634 0.4916 0.9025 23 1 -0.3634 0.5358 -0.8769 24 1 -0.3634 -1.0273 -0.0256 25 1 3.1102 -0.5183 -1.4250 26 1 1.4489 -0.6362 -2.0940 27 1 3.3206 -3.8047 -0.5239 28 1 2.9536 -2.5756 -3.1777 29 1 2.1704 -4.0831 -2.6466 30 1 4.3977 -5.1117 -2.2843 31 1 5.1803 -3.6039 -2.8155 32 1 6.9766 -6.2454 -4.6525 33 1 4.0298 -2.5680 0.9966 34 1 3.1125 -2.7242 2.5140 35 1 2.9624 -3.9694 1.2510 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395008564.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:09:45 Heat of formation + Delta-G solvation = -57.322526 kcal Electronic energy + Delta-G solvation = -14552.790333 eV Core-core repulsion = 12164.273054 eV Total energy + Delta-G solvation = -2388.517279 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.89021 -35.71104 -33.11337 -32.40616 -31.00877 -28.73510 -27.54852 -24.68859 -23.79979 -21.10896 -20.31343 -19.72935 -16.43789 -16.16075 -15.89771 -15.29497 -15.16964 -14.42674 -13.68110 -13.33103 -13.13396 -12.57857 -12.35835 -12.15156 -11.92457 -11.86609 -11.71580 -11.09755 -10.91625 -10.85558 -10.70404 -10.59708 -10.48263 -9.98930 -9.61362 -9.34165 -9.14883 -8.36153 -7.85859 -6.00494 -4.03217 3.31532 3.37627 3.40600 3.89998 4.41253 4.63201 4.68517 4.85777 5.05775 5.15285 5.28281 5.35498 5.39752 5.50583 5.59799 5.65505 5.80021 5.91306 6.01482 6.08104 6.13548 6.30652 6.31075 6.43812 6.48003 6.96544 7.04612 7.46569 7.70981 7.81193 7.93597 8.07134 8.42570 9.03947 9.60662 11.10921 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.054492 B = 0.005837 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.715906 B = 4795.596562 C = 5131.060998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.071 3.929 3 H 0.099 0.901 4 C -0.138 4.138 5 C 0.056 3.944 6 H 0.047 0.953 7 N -0.681 5.681 8 C 0.064 3.936 9 C 0.026 3.974 10 C -0.522 4.522 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.076 3.924 19 H 0.060 0.940 20 C -0.152 4.152 21 O -0.368 6.368 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.340 0.660 28 H 0.058 0.942 29 H 0.014 0.986 30 H 0.013 0.987 31 H 0.025 0.975 32 H 0.261 0.739 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.000 8.321 8.741 15.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 H 0.117 0.883 4 C -0.176 4.176 5 C -0.055 4.055 6 H 0.065 0.935 7 N -0.315 5.315 8 C -0.064 4.064 9 C -0.012 4.012 10 C -0.561 4.561 11 H 0.072 0.928 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.720 3.280 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.200 1.200 18 C 0.018 3.982 19 H 0.078 0.922 20 C -0.210 4.210 21 O -0.287 6.287 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.109 0.891 26 H 0.092 0.908 27 H 0.162 0.838 28 H 0.076 0.924 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.384 8.852 8.775 15.602 hybrid contribution -0.841 -1.194 -1.194 1.887 sum -10.225 7.658 7.581 14.855 Atomic orbital electron populations 1.22258 0.95999 1.02468 1.02235 1.23096 0.93264 0.96663 0.85665 0.88278 1.23209 1.03076 0.93968 0.97394 1.22830 0.93191 0.95475 0.93961 0.93497 1.60895 1.36320 1.28969 1.05316 1.22203 0.99590 0.98105 0.86482 1.19062 0.91979 0.94433 0.95715 1.21169 1.03894 1.33899 0.97132 0.92812 1.24998 0.95330 0.96084 0.97904 1.69972 1.07763 1.38986 1.36492 0.86589 0.78073 0.78119 0.85175 1.20613 1.21203 1.19956 1.22753 0.98369 0.83125 0.93934 0.92168 1.21865 0.99487 0.99061 1.00553 1.88899 1.84131 1.16631 1.39053 0.92063 0.91579 0.92391 0.89136 0.90817 0.83846 0.92365 0.96744 0.96850 0.95623 0.92974 0.89864 0.92444 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.39 37.16 0.35 -1.40 16 2 C 0.07 0.87 4.29 -25.68 -0.11 0.76 16 3 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.14 -1.92 5.98 -24.73 -0.15 -2.06 16 5 C 0.06 0.84 2.91 -66.18 -0.19 0.65 16 6 H 0.05 0.69 7.98 -51.93 -0.41 0.28 16 7 N -0.68 -12.12 5.32 -105.12 -0.56 -12.68 16 8 C 0.06 1.35 5.47 -3.83 -0.02 1.33 16 9 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 10 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 11 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 14 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 18 C 0.08 1.04 3.45 -26.16 -0.09 0.95 16 19 H 0.06 0.75 8.05 -51.93 -0.42 0.33 16 20 C -0.15 -2.01 8.28 37.16 0.31 -1.70 16 21 O -0.37 -5.34 10.95 -35.23 -0.39 -5.73 16 22 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.61 7.28 -51.93 -0.38 0.23 16 25 H 0.09 1.40 8.07 -51.92 -0.42 0.99 16 26 H 0.07 0.94 8.05 -51.93 -0.42 0.53 16 27 H 0.34 5.82 6.12 -39.29 -0.24 5.58 16 28 H 0.06 1.23 7.88 -51.93 -0.41 0.82 16 29 H 0.01 0.30 8.10 -51.93 -0.42 -0.12 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.08 1.24 7.41 -51.93 -0.38 0.86 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.81 7.14 -51.93 -0.37 0.44 16 LS Contribution 280.98 15.07 4.23 4.23 Total: -1.00 -30.23 280.98 -7.41 -37.64 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.95 Total: 0.66 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -0.46 Total: -14.55 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.18 Total: -38.92 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.39 Total: -5.73 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.23 -7.41 -37.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395008564.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.683 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds