Wall clock time and date at job start Mon Mar 30 2020 17:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.54894 * 2 1 4 4 C 1.54986 * 110.61671 * 236.94635 * 2 1 3 5 5 C 1.54810 * 102.09650 * 278.52420 * 4 2 1 6 6 H 1.08996 * 110.60294 * 97.85158 * 5 4 2 7 7 N 1.46900 * 110.48978 * 220.44624 * 5 4 2 8 8 C 1.46889 * 110.99957 * 279.67297 * 7 5 4 9 9 C 1.53004 * 109.47447 * 179.97438 * 8 7 5 10 10 C 1.50694 * 109.47656 * 180.02562 * 9 8 7 11 11 H 1.08009 * 119.99572 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00058 * 180.27685 * 10 9 8 13 13 N 1.31510 * 119.99993 * 359.72645 * 12 10 9 14 14 Si 1.86808 * 119.99845 * 179.72374 * 12 10 9 15 15 H 1.48500 * 109.46866 * 90.00192 * 14 12 10 16 16 H 1.48498 * 109.47094 * 210.00111 * 14 12 10 17 17 H 1.48496 * 109.47000 * 330.00042 * 14 12 10 18 18 C 1.54103 * 104.18391 * 339.12238 * 5 4 2 19 19 H 1.09002 * 109.88143 * 117.39230 * 18 5 4 20 20 C 1.52999 * 109.88062 * 238.39356 * 18 5 4 21 21 O 1.43739 * 107.29676 * 357.96700 * 18 5 4 22 22 H 1.09010 * 109.47500 * 298.57846 * 1 2 3 23 23 H 1.09001 * 109.47314 * 58.57573 * 1 2 3 24 24 H 1.08999 * 109.47460 * 178.57340 * 1 2 3 25 25 H 1.09008 * 110.90859 * 160.32630 * 4 2 1 26 26 H 1.09001 * 110.91108 * 36.72418 * 4 2 1 27 27 H 1.00908 * 110.99730 * 155.72095 * 7 5 4 28 28 H 1.09000 * 109.47159 * 60.00263 * 8 7 5 29 29 H 1.09000 * 109.47754 * 300.00043 * 8 7 5 30 30 H 1.09000 * 109.46676 * 60.00029 * 9 8 7 31 31 H 1.08997 * 109.47189 * 300.00535 * 9 8 7 32 32 H 0.97006 * 119.99846 * 179.97438 * 13 12 10 33 33 H 1.09003 * 109.47028 * 53.94434 * 20 18 5 34 34 H 1.09000 * 109.47522 * 173.94474 * 20 18 5 35 35 H 1.09000 * 109.47232 * 293.95180 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0757 -0.7912 -1.2158 5 6 1.9800 -2.2546 -0.7201 6 1 1.0728 -2.7281 -1.0953 7 7 3.1654 -3.0166 -1.1347 8 6 3.0501 -3.4496 -2.5336 9 6 4.3008 -4.2377 -2.9284 10 6 4.1828 -4.6814 -4.3637 11 1 3.3038 -4.4263 -4.9372 12 6 5.1945 -5.4172 -4.9432 13 7 6.2649 -5.7274 -4.2449 14 14 5.0448 -5.9738 -6.7201 15 1 5.6235 -4.9383 -7.6135 16 1 5.7794 -7.2514 -6.9022 17 1 3.6125 -6.1740 -7.0570 18 6 1.9282 -2.1306 0.8151 19 1 0.9815 -2.5224 1.1870 20 6 3.0919 -2.9036 1.4390 21 8 2.0383 -0.7336 1.1350 22 1 -0.3634 0.4916 0.9025 23 1 -0.3634 0.5358 -0.8769 24 1 -0.3634 -1.0273 -0.0256 25 1 3.1102 -0.5183 -1.4250 26 1 1.4489 -0.6362 -2.0940 27 1 3.3206 -3.8047 -0.5239 28 1 2.9536 -2.5756 -3.1777 29 1 2.1704 -4.0831 -2.6466 30 1 4.3977 -5.1117 -2.2843 31 1 5.1803 -3.6039 -2.8155 32 1 6.9766 -6.2454 -4.6525 33 1 4.0298 -2.5680 0.9966 34 1 3.1125 -2.7242 2.5140 35 1 2.9624 -3.9694 1.2510 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395008564.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:09:44 Heat of formation + Delta-G solvation = -77.312460 kcal Electronic energy + Delta-G solvation = -14553.657161 eV Core-core repulsion = 12164.273054 eV Total energy + Delta-G solvation = -2389.384108 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.99216 -37.22139 -35.09809 -33.43105 -32.61655 -30.13831 -28.86740 -26.17683 -25.34048 -22.67467 -21.66523 -20.92547 -18.50330 -17.28319 -17.21673 -16.62199 -16.38990 -16.28863 -15.04660 -14.92038 -14.36850 -13.96330 -13.65927 -13.49064 -13.39425 -12.98441 -12.83577 -12.80123 -12.65863 -12.40102 -12.18304 -11.86493 -11.68402 -11.60830 -11.37574 -11.22207 -10.60694 -10.55864 -9.31429 -8.20798 -6.32503 1.40384 1.41957 1.52854 2.40137 2.88133 3.12801 3.25374 3.57684 3.82844 4.06719 4.12926 4.30530 4.40635 4.46078 4.50784 4.55001 4.62218 4.66301 4.85705 4.91396 5.02884 5.07833 5.13826 5.15371 5.32614 5.37754 5.44374 5.66015 5.77882 6.01084 6.12489 6.27273 6.51678 6.84736 7.37001 8.91382 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.054492 B = 0.005837 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.715906 B = 4795.596562 C = 5131.060998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.071 3.929 3 H 0.111 0.889 4 C -0.139 4.139 5 C 0.053 3.947 6 H 0.055 0.945 7 N -0.686 5.686 8 C 0.084 3.916 9 C 0.032 3.968 10 C -0.545 4.545 11 H 0.060 0.940 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.967 3.033 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.078 3.922 19 H 0.080 0.920 20 C -0.151 4.151 21 O -0.385 6.385 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.343 0.657 28 H 0.057 0.943 29 H 0.019 0.981 30 H -0.008 1.008 31 H -0.007 1.007 32 H 0.264 0.736 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.661 8.698 8.293 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.014 3.986 3 H 0.129 0.871 4 C -0.178 4.178 5 C -0.057 4.057 6 H 0.073 0.927 7 N -0.321 5.321 8 C -0.044 4.044 9 C -0.005 4.005 10 C -0.584 4.584 11 H 0.078 0.922 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.791 3.209 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.187 1.187 18 C 0.021 3.979 19 H 0.097 0.903 20 C -0.208 4.208 21 O -0.305 6.305 22 H 0.088 0.912 23 H 0.100 0.900 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.103 0.897 27 H 0.165 0.835 28 H 0.075 0.925 29 H 0.037 0.963 30 H 0.010 0.990 31 H 0.011 0.989 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.061 9.244 8.340 16.654 hybrid contribution -0.300 -1.281 -0.998 1.652 sum -11.362 7.963 7.341 15.697 Atomic orbital electron populations 1.22218 0.94027 1.02689 1.03467 1.23249 0.94759 0.96656 0.83951 0.87097 1.23206 1.02173 0.93586 0.98793 1.22942 0.92007 0.95518 0.95261 0.92664 1.60810 1.38414 1.29175 1.03700 1.21797 0.96940 0.97258 0.88448 1.18912 0.93172 0.93576 0.94882 1.21606 1.04298 1.34156 0.98294 0.92157 1.25973 0.94805 0.96018 1.02881 1.70109 1.08647 1.39683 1.38727 0.85418 0.78645 0.77714 0.79073 1.19781 1.20687 1.18683 1.22788 0.99267 0.83109 0.92783 0.90255 1.21841 0.98327 0.99530 1.01142 1.88882 1.84660 1.17017 1.39967 0.91211 0.89981 0.92679 0.91350 0.89655 0.83517 0.92453 0.96289 0.99004 0.98861 0.92729 0.92109 0.91244 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.39 71.98 0.68 -2.24 16 2 C 0.07 1.60 4.29 31.27 0.13 1.74 16 3 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 4 C -0.14 -3.70 5.98 31.89 0.19 -3.51 16 5 C 0.05 1.52 2.91 45.91 0.13 1.65 16 6 H 0.06 1.52 7.98 -2.39 -0.02 1.50 16 7 N -0.69 -24.44 5.32 -486.49 -2.59 -27.03 16 8 C 0.08 3.56 5.47 86.31 0.47 4.03 16 9 C 0.03 1.72 5.23 29.85 0.16 1.88 16 10 C -0.55 -31.27 9.11 25.60 0.23 -31.03 16 11 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 12 C 0.00 0.07 5.46 84.65 0.46 0.53 16 13 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 14 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 18 C 0.08 2.02 3.45 30.97 0.11 2.13 16 19 H 0.08 1.77 8.05 -2.39 -0.02 1.75 16 20 C -0.15 -3.86 8.28 71.98 0.60 -3.26 16 21 O -0.39 -10.57 10.95 -148.98 -1.63 -12.20 16 22 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 23 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.05 1.00 7.28 -2.39 -0.02 0.98 16 25 H 0.07 2.12 8.07 -2.38 -0.02 2.10 16 26 H 0.08 2.04 8.05 -2.39 -0.02 2.02 16 27 H 0.34 11.80 6.12 -89.69 -0.55 11.25 16 28 H 0.06 2.41 7.88 -2.39 -0.02 2.39 16 29 H 0.02 0.78 8.10 -2.39 -0.02 0.76 16 30 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 32 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 33 H 0.06 1.82 7.41 -2.39 -0.02 1.80 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.76 7.14 -2.39 -0.02 1.75 16 Total: -1.00 -64.54 280.98 1.75 -62.79 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.50 Total: 15.10 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 3.16 Total: -28.09 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -2.31 Total: -83.90 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -1.63 Total: -12.20 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -64.54 1.75 -62.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395008564.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.519 kcal (2) G-P(sol) polarization free energy of solvation -64.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds