Wall clock time and date at job start Mon Mar 30 2020 17:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.47029 * 2 1 4 4 C 1.36933 * 119.99636 * 270.32553 * 3 2 1 5 5 H 1.08004 * 120.00644 * 326.14402 * 4 3 2 6 6 C 1.38816 * 120.00161 * 146.14409 * 4 3 2 7 7 N 1.31621 * 119.99991 * 336.90373 * 6 4 3 8 8 Si 1.86799 * 120.00089 * 156.89482 * 6 4 3 9 9 H 1.48508 * 109.46941 * 90.00642 * 8 6 4 10 10 H 1.48494 * 109.47252 * 210.00163 * 8 6 4 11 11 H 1.48501 * 109.47456 * 330.00735 * 8 6 4 12 12 C 1.46495 * 120.00406 * 90.32356 * 3 2 1 13 13 C 1.53003 * 109.47126 * 89.99617 * 12 3 2 14 14 C 1.52997 * 109.46972 * 179.97438 * 13 12 3 15 15 O 1.42906 * 112.85095 * 53.81066 * 14 13 12 16 16 C 1.53771 * 113.61932 * 282.50050 * 14 13 12 17 17 C 1.53784 * 87.08411 * 220.02190 * 16 14 13 18 18 C 1.53779 * 87.07883 * 25.42895 * 17 16 14 19 19 H 1.09000 * 109.47000 * 59.99887 * 1 2 3 20 20 H 1.08990 * 109.47132 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47123 * 300.00140 * 1 2 3 22 22 H 1.08992 * 109.47260 * 239.99735 * 2 1 3 23 23 H 1.09003 * 109.47225 * 119.99375 * 2 1 3 24 24 H 0.97000 * 120.00109 * 179.97438 * 7 6 4 25 25 H 1.09013 * 109.47085 * 330.00295 * 12 3 2 26 26 H 1.09000 * 109.47610 * 210.00411 * 12 3 2 27 27 H 1.08999 * 109.46741 * 60.00411 * 13 12 3 28 28 H 1.08991 * 109.47255 * 300.00283 * 13 12 3 29 29 H 0.96703 * 113.99733 * 309.66763 * 15 14 13 30 30 H 1.08997 * 113.61490 * 334.56829 * 16 14 13 31 31 H 1.09004 * 113.61841 * 105.47053 * 16 14 13 32 32 H 1.08998 * 113.60852 * 270.88394 * 17 16 14 33 33 H 1.09000 * 113.61584 * 139.97888 * 17 16 14 34 34 H 1.08999 * 113.61700 * 220.01367 * 18 17 16 35 35 H 1.09007 * 113.61269 * 89.11798 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2402 2.0290 -1.1859 5 1 2.5927 1.4773 -2.0449 6 6 2.0121 3.3947 -1.2841 7 7 1.1857 3.9858 -0.4474 8 14 2.8782 4.3938 -2.6036 9 1 2.0452 4.4180 -3.8328 10 1 3.0843 5.7819 -2.1181 11 1 4.1935 3.7758 -2.9091 12 6 2.2693 2.0696 1.2686 13 6 3.7166 1.8283 1.7022 14 6 3.9789 2.5477 3.0268 15 8 3.0368 2.1994 4.0434 16 6 4.1905 4.0630 2.8735 17 6 5.2992 3.9358 3.9316 18 6 5.4429 2.4695 3.4909 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5137 0.8901 24 1 1.0265 4.9402 -0.5158 25 1 1.5925 1.6840 2.0313 26 1 2.1016 3.1390 1.1412 27 1 4.3934 2.2138 0.9396 28 1 3.8843 0.7589 1.8296 29 1 2.1135 2.2691 3.7645 30 1 4.5575 4.3553 1.8897 31 1 3.3389 4.6584 3.2028 32 1 4.9414 4.0511 4.9548 33 1 6.1782 4.5440 3.7184 34 1 5.6024 1.7784 4.3185 35 1 6.1523 2.3262 2.6757 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396800708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:09:49 Heat of formation + Delta-G solvation = -20.160792 kcal Electronic energy + Delta-G solvation = -15130.456910 eV Core-core repulsion = 12743.551085 eV Total energy + Delta-G solvation = -2386.905825 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.24735 -35.91041 -34.15591 -31.78272 -30.73020 -28.11053 -25.46364 -24.76673 -23.30421 -21.43757 -19.73900 -19.19715 -16.69045 -15.97853 -15.09264 -14.73657 -14.54296 -13.96616 -13.55439 -13.18918 -12.95475 -12.33042 -12.20216 -11.92841 -11.38979 -11.15197 -10.99949 -10.85451 -10.73769 -10.60375 -10.53516 -10.32536 -10.11830 -9.78651 -9.67108 -9.43684 -9.03975 -8.47203 -6.58888 -5.77191 -3.30239 3.34869 3.43053 3.46269 4.48308 4.50058 4.97233 5.05019 5.22212 5.34439 5.42063 5.56963 5.95754 6.07154 6.11734 6.15257 6.17337 6.18383 6.35434 6.42677 6.49609 6.55113 6.66872 6.69243 6.74761 6.90802 6.99178 7.17543 7.27162 7.72701 7.82681 8.12431 8.51510 9.20282 9.84744 10.41407 11.22530 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023603 B = 0.011946 C = 0.008932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.023939 B = 2343.344845 C = 3134.186932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 N -0.586 5.586 4 C -0.254 4.254 5 H 0.061 0.939 6 C 0.008 3.992 7 N -0.887 5.887 8 Si 0.892 3.108 9 H -0.287 1.287 10 H -0.289 1.289 11 H -0.279 1.279 12 C 0.141 3.859 13 C -0.150 4.150 14 C 0.114 3.886 15 O -0.553 6.553 16 C -0.159 4.159 17 C -0.138 4.138 18 C -0.129 4.129 19 H 0.053 0.947 20 H 0.029 0.971 21 H 0.042 0.958 22 H 0.040 0.960 23 H 0.032 0.968 24 H 0.253 0.747 25 H 0.018 0.982 26 H 0.103 0.897 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.380 0.620 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.623 -1.871 6.024 7.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 N -0.307 5.307 4 C -0.384 4.384 5 H 0.078 0.922 6 C -0.192 4.192 7 N -0.531 5.531 8 Si 0.721 3.279 9 H -0.214 1.214 10 H -0.215 1.215 11 H -0.204 1.204 12 C 0.015 3.985 13 C -0.190 4.190 14 C 0.073 3.927 15 O -0.361 6.361 16 C -0.197 4.197 17 C -0.175 4.175 18 C -0.166 4.166 19 H 0.073 0.927 20 H 0.048 0.952 21 H 0.061 0.939 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.036 0.964 26 H 0.120 0.880 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.229 0.771 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.103 -1.811 6.361 8.353 hybrid contribution -0.170 0.709 -1.034 1.265 sum 4.933 -1.102 5.326 7.343 Atomic orbital electron populations 1.22282 0.99814 0.98303 1.01815 1.20870 0.91908 0.87703 0.98060 1.43855 1.74639 1.09837 1.02320 1.19057 1.37717 0.91168 0.90417 0.92179 1.25035 0.97533 0.98502 0.98096 1.69970 1.33628 1.10151 1.39329 0.86468 0.80084 0.79624 0.81688 1.21361 1.21476 1.20428 1.20943 0.89796 1.02008 0.85786 1.22653 1.02862 0.99069 0.94420 1.22168 0.89081 0.93539 0.87920 1.86316 1.19280 1.90829 1.39655 1.23533 0.99000 0.97750 0.99394 1.22781 0.98864 0.96601 0.99292 1.23019 0.95421 0.97062 1.01121 0.92742 0.95151 0.93895 0.94145 0.94946 0.93663 0.96404 0.87960 0.91276 0.93344 0.77060 0.89455 0.91309 0.90403 0.92062 0.91404 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 10.24 37.16 0.38 -2.91 16 2 C 0.14 3.02 6.39 -4.04 -0.03 2.99 16 3 N -0.59 -14.44 2.45 -173.23 -0.42 -14.86 16 4 C -0.25 -6.86 9.48 -15.06 -0.14 -7.00 16 5 H 0.06 1.63 7.93 -52.48 -0.42 1.21 16 6 C 0.01 0.21 4.95 -17.43 -0.09 0.13 16 7 N -0.89 -24.92 11.31 55.49 0.63 -24.29 16 8 Si 0.89 21.29 29.61 -169.99 -5.03 16.26 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.14 3.20 4.86 -4.04 -0.02 3.18 16 13 C -0.15 -2.98 5.18 -26.73 -0.14 -3.12 16 14 C 0.11 2.00 1.38 -89.81 -0.12 1.87 16 15 O -0.55 -9.67 13.39 -35.23 -0.47 -10.14 16 16 C -0.16 -2.68 7.32 -25.92 -0.19 -2.87 16 17 C -0.14 -1.99 8.02 -25.92 -0.21 -2.20 16 18 C -0.13 -1.96 7.47 -25.92 -0.19 -2.15 16 19 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 20 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 23 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 24 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 25 H 0.02 0.38 6.68 -51.92 -0.35 0.03 16 26 H 0.10 2.61 5.22 -51.93 -0.27 2.34 16 27 H 0.07 1.47 8.05 -51.93 -0.42 1.05 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.38 6.06 7.18 45.56 0.33 6.38 16 30 H 0.09 1.54 8.03 -51.93 -0.42 1.13 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.27 8.10 -51.92 -0.42 0.85 16 LS Contribution 284.13 15.07 4.28 4.28 Total: -1.00 -28.47 284.13 -7.09 -35.56 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.32 Total: 5.27 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.75 Total: -12.08 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.20 Total: -39.15 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.47 Total: -10.14 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.47 -7.09 -35.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396800708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.398 kcal (2) G-P(sol) polarization free energy of solvation -28.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds