Wall clock time and date at job start Mon Mar 30 2020 17:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.47029 * 2 1 4 4 C 1.36933 * 119.99636 * 270.32553 * 3 2 1 5 5 H 1.08004 * 120.00644 * 326.14402 * 4 3 2 6 6 C 1.38816 * 120.00161 * 146.14409 * 4 3 2 7 7 N 1.31621 * 119.99991 * 336.90373 * 6 4 3 8 8 Si 1.86799 * 120.00089 * 156.89482 * 6 4 3 9 9 H 1.48508 * 109.46941 * 90.00642 * 8 6 4 10 10 H 1.48494 * 109.47252 * 210.00163 * 8 6 4 11 11 H 1.48501 * 109.47456 * 330.00735 * 8 6 4 12 12 C 1.46495 * 120.00406 * 90.32356 * 3 2 1 13 13 C 1.53003 * 109.47126 * 89.99617 * 12 3 2 14 14 C 1.52997 * 109.46972 * 179.97438 * 13 12 3 15 15 O 1.42906 * 112.85095 * 53.81066 * 14 13 12 16 16 C 1.53771 * 113.61932 * 282.50050 * 14 13 12 17 17 C 1.53784 * 87.08411 * 220.02190 * 16 14 13 18 18 C 1.53779 * 87.07883 * 25.42895 * 17 16 14 19 19 H 1.09000 * 109.47000 * 59.99887 * 1 2 3 20 20 H 1.08990 * 109.47132 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47123 * 300.00140 * 1 2 3 22 22 H 1.08992 * 109.47260 * 239.99735 * 2 1 3 23 23 H 1.09003 * 109.47225 * 119.99375 * 2 1 3 24 24 H 0.97000 * 120.00109 * 179.97438 * 7 6 4 25 25 H 1.09013 * 109.47085 * 330.00295 * 12 3 2 26 26 H 1.09000 * 109.47610 * 210.00411 * 12 3 2 27 27 H 1.08999 * 109.46741 * 60.00411 * 13 12 3 28 28 H 1.08991 * 109.47255 * 300.00283 * 13 12 3 29 29 H 0.96703 * 113.99733 * 309.66763 * 15 14 13 30 30 H 1.08997 * 113.61490 * 334.56829 * 16 14 13 31 31 H 1.09004 * 113.61841 * 105.47053 * 16 14 13 32 32 H 1.08998 * 113.60852 * 270.88394 * 17 16 14 33 33 H 1.09000 * 113.61584 * 139.97888 * 17 16 14 34 34 H 1.08999 * 113.61700 * 220.01367 * 18 17 16 35 35 H 1.09007 * 113.61269 * 89.11798 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2402 2.0290 -1.1859 5 1 2.5927 1.4773 -2.0449 6 6 2.0121 3.3947 -1.2841 7 7 1.1857 3.9858 -0.4474 8 14 2.8782 4.3938 -2.6036 9 1 2.0452 4.4180 -3.8328 10 1 3.0843 5.7819 -2.1181 11 1 4.1935 3.7758 -2.9091 12 6 2.2693 2.0696 1.2686 13 6 3.7166 1.8283 1.7022 14 6 3.9789 2.5477 3.0268 15 8 3.0368 2.1994 4.0434 16 6 4.1905 4.0630 2.8735 17 6 5.2992 3.9358 3.9316 18 6 5.4429 2.4695 3.4909 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5137 0.8901 24 1 1.0265 4.9402 -0.5158 25 1 1.5925 1.6840 2.0313 26 1 2.1016 3.1390 1.1412 27 1 4.3934 2.2138 0.9396 28 1 3.8843 0.7589 1.8296 29 1 2.1135 2.2691 3.7645 30 1 4.5575 4.3553 1.8897 31 1 3.3389 4.6584 3.2028 32 1 4.9414 4.0511 4.9548 33 1 6.1782 4.5440 3.7184 34 1 5.6024 1.7784 4.3185 35 1 6.1523 2.3262 2.6757 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396800708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:09:48 Heat of formation + Delta-G solvation = -37.428048 kcal Electronic energy + Delta-G solvation = -15131.205674 eV Core-core repulsion = 12743.551085 eV Total energy + Delta-G solvation = -2387.654590 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.61158 -37.73680 -35.50048 -33.76146 -32.40143 -29.91711 -26.87445 -26.43541 -24.99212 -22.98783 -21.52535 -20.52754 -18.63324 -17.43099 -16.83781 -16.39034 -15.86659 -15.79118 -15.24368 -14.68463 -14.56682 -14.07224 -13.83043 -13.30176 -13.10042 -12.90751 -12.70367 -12.46572 -12.43444 -12.25120 -12.07799 -11.87268 -11.76320 -11.54350 -11.42016 -10.93438 -10.55810 -10.39513 -8.57477 -7.80417 -5.37426 1.44095 1.47754 1.56347 2.51923 3.17723 3.24607 3.58932 3.71306 3.86129 3.98345 4.19052 4.42331 4.50113 4.64771 4.72345 4.80734 4.84961 4.86313 4.93348 4.97492 5.04486 5.06970 5.15640 5.28251 5.40215 5.44212 5.51999 5.54974 5.68983 5.90408 6.47888 6.77260 7.19026 7.90373 8.40834 9.15280 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023603 B = 0.011946 C = 0.008932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.023939 B = 2343.344845 C = 3134.186932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.135 3.865 3 N -0.603 5.603 4 C -0.265 4.265 5 H 0.054 0.946 6 C -0.035 4.035 7 N -0.913 5.913 8 Si 0.949 3.051 9 H -0.286 1.286 10 H -0.289 1.289 11 H -0.274 1.274 12 C 0.144 3.856 13 C -0.134 4.134 14 C 0.108 3.892 15 O -0.556 6.556 16 C -0.166 4.166 17 C -0.124 4.124 18 C -0.123 4.123 19 H 0.026 0.974 20 H 0.066 0.934 21 H 0.033 0.967 22 H 0.042 0.958 23 H 0.052 0.948 24 H 0.250 0.750 25 H 0.025 0.975 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.384 0.616 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.617 -2.351 6.651 9.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.010 3.990 3 N -0.324 5.324 4 C -0.395 4.395 5 H 0.071 0.929 6 C -0.232 4.232 7 N -0.557 5.557 8 Si 0.777 3.223 9 H -0.213 1.213 10 H -0.216 1.216 11 H -0.199 1.199 12 C 0.018 3.982 13 C -0.174 4.174 14 C 0.066 3.934 15 O -0.364 6.364 16 C -0.204 4.204 17 C -0.161 4.161 18 C -0.160 4.160 19 H 0.045 0.955 20 H 0.085 0.915 21 H 0.052 0.948 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.043 0.957 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.234 0.766 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.099 -2.310 6.993 9.562 hybrid contribution -0.531 0.792 -1.228 1.555 sum 5.569 -1.519 5.765 8.158 Atomic orbital electron populations 1.22137 0.98906 1.00099 0.99927 1.21018 0.92600 0.86300 0.99113 1.44111 1.75220 1.10891 1.02203 1.19240 1.37422 0.91678 0.91161 0.92853 1.25636 0.98168 0.99274 1.00108 1.70090 1.34749 1.09999 1.40864 0.85581 0.79171 0.78128 0.79434 1.21320 1.21552 1.19872 1.20856 0.91704 1.00252 0.85411 1.22426 1.00331 0.99312 0.95374 1.22263 0.90629 0.93590 0.86903 1.86312 1.19680 1.90831 1.39543 1.23531 0.99888 0.97193 0.99747 1.22727 0.98458 0.96272 0.98618 1.23039 0.93482 0.97815 1.01669 0.95492 0.91469 0.94790 0.93929 0.92947 0.94029 0.95668 0.90666 0.93013 0.93179 0.76592 0.90764 0.92158 0.89764 0.89995 0.90481 0.88385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.96 10.24 71.98 0.74 -5.22 16 2 C 0.14 5.64 6.39 86.38 0.55 6.19 16 3 N -0.60 -29.67 2.45 -701.97 -1.72 -31.39 16 4 C -0.26 -14.38 9.48 84.04 0.80 -13.58 16 5 H 0.05 2.91 7.93 -2.91 -0.02 2.89 16 6 C -0.03 -1.89 4.95 84.86 0.42 -1.47 16 7 N -0.91 -52.01 11.31 21.65 0.24 -51.76 16 8 Si 0.95 44.05 29.61 68.60 2.03 46.08 16 9 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 10 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 C 0.14 6.53 4.86 86.38 0.42 6.95 16 13 C -0.13 -5.26 5.18 30.59 0.16 -5.10 16 14 C 0.11 3.63 1.38 -10.27 -0.01 3.61 16 15 O -0.56 -18.63 13.39 -148.98 -1.99 -20.63 16 16 C -0.17 -5.46 7.32 31.12 0.23 -5.23 16 17 C -0.12 -3.26 8.02 31.12 0.25 -3.01 16 18 C -0.12 -3.43 7.47 31.12 0.23 -3.20 16 19 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 20 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 21 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.04 1.74 8.04 -2.39 -0.02 1.72 16 23 H 0.05 1.96 8.07 -2.39 -0.02 1.94 16 24 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 25 H 0.03 1.08 6.68 -2.38 -0.02 1.06 16 26 H 0.08 3.91 5.22 -2.39 -0.01 3.90 16 27 H 0.05 2.19 8.05 -2.39 -0.02 2.17 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.38 11.96 7.18 -74.06 -0.53 11.43 16 30 H 0.07 2.62 8.03 -2.39 -0.02 2.60 16 31 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.10 2.55 8.10 -2.38 -0.02 2.53 16 Total: -1.00 -59.60 284.13 2.85 -56.74 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.52 Total: 21.01 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 3.78 Total: -20.06 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -1.48 Total: -83.15 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -1.99 Total: -20.63 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -59.60 2.85 -56.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396800708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.316 kcal (2) G-P(sol) polarization free energy of solvation -59.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds