Wall clock time and date at job start Mon Mar 30 2020 17:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00604 * 2 1 4 4 H 1.09002 * 110.63878 * 328.30689 * 3 2 1 5 5 C 1.54597 * 110.72311 * 91.45074 * 3 2 1 6 6 C 1.53992 * 105.13665 * 140.31796 * 5 3 2 7 7 N 1.47902 * 107.06038 * 1.22495 * 6 5 3 8 8 C 1.46899 * 111.00305 * 214.15537 * 7 6 5 9 9 H 1.08993 * 109.47065 * 179.39905 * 8 7 6 10 10 C 1.53004 * 109.46723 * 299.39811 * 8 7 6 11 11 C 1.52993 * 109.47168 * 59.39648 * 8 7 6 12 12 C 1.50698 * 109.47315 * 174.65824 * 11 8 7 13 13 H 1.07998 * 119.99883 * 354.91300 * 12 11 8 14 14 C 1.37878 * 120.00151 * 174.64869 * 12 11 8 15 15 N 1.31512 * 120.00011 * 0.26515 * 14 12 11 16 16 Si 1.86801 * 120.00061 * 180.27661 * 14 12 11 17 17 H 1.48497 * 109.47162 * 59.99136 * 16 14 12 18 18 H 1.48499 * 109.47259 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46838 * 299.98991 * 16 14 12 20 20 C 1.48534 * 105.82031 * 334.67236 * 7 6 5 21 21 H 1.08992 * 109.46832 * 59.99375 * 1 2 3 22 22 H 1.08992 * 109.47198 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46610 * 300.00153 * 1 2 3 24 24 H 1.09001 * 110.30989 * 21.40683 * 5 3 2 25 25 H 1.08997 * 110.31234 * 259.23463 * 5 3 2 26 26 H 1.09005 * 109.91858 * 241.86895 * 6 5 3 27 27 H 1.08997 * 109.91915 * 120.57814 * 6 5 3 28 28 H 1.08999 * 109.47148 * 299.99519 * 10 8 7 29 29 H 1.08993 * 109.47273 * 60.00221 * 10 8 7 30 30 H 1.09007 * 109.46492 * 180.02562 * 10 8 7 31 31 H 1.09004 * 109.46992 * 54.65572 * 11 8 7 32 32 H 1.09004 * 109.47500 * 294.65480 * 11 8 7 33 33 H 0.97000 * 120.00080 * 180.02562 * 15 14 12 34 34 H 1.09000 * 110.66778 * 157.64235 * 20 7 6 35 35 H 1.08996 * 110.66281 * 280.77014 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3738 2.0095 -0.5359 5 6 2.2664 1.7902 1.4455 6 6 3.6257 2.5119 1.3927 7 7 4.0897 2.4612 -0.0107 8 6 5.5526 2.3455 -0.0777 9 1 5.8660 2.2995 -1.1206 10 6 6.1917 3.5628 0.5937 11 6 5.9971 1.0724 0.6451 12 6 7.4814 0.8845 0.4646 13 1 8.0367 1.5544 -0.1752 14 6 8.1315 -0.1392 1.1206 15 7 7.4554 -0.9549 1.8998 16 14 9.9727 -0.3674 0.9030 17 1 10.6803 0.8565 1.3575 18 1 10.4263 -1.5291 1.7092 19 1 10.2753 -0.6108 -0.5303 20 6 3.4336 1.2718 -0.6114 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 2.3154 0.9405 2.1264 25 1 1.4831 2.4811 1.7571 26 1 4.3413 2.0036 2.0391 27 1 3.5081 3.5487 1.7077 28 1 5.8751 4.4698 0.0788 29 1 5.8783 3.6088 1.6366 30 1 7.2772 3.4771 0.5436 31 1 5.4690 0.2148 0.2283 32 1 5.7684 1.1589 1.7073 33 1 7.9128 -1.6749 2.3616 34 1 3.3884 1.3643 -1.6966 35 1 3.9545 0.3587 -0.3235 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591015708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:11:16 Heat of formation + Delta-G solvation = -44.853114 kcal Electronic energy + Delta-G solvation = -14913.650252 eV Core-core repulsion = 12525.673687 eV Total energy + Delta-G solvation = -2387.976565 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.22066 -37.02731 -33.65758 -31.95630 -28.83480 -28.22467 -26.92059 -25.83460 -23.35761 -21.87367 -20.57783 -18.50806 -16.98231 -16.24192 -15.61093 -14.77100 -14.57162 -14.22315 -14.16482 -13.35697 -13.23637 -12.77509 -11.97042 -11.89844 -11.69386 -11.46779 -11.16048 -10.97245 -10.87357 -10.83125 -10.65264 -10.40091 -10.12602 -9.75073 -9.65509 -9.34262 -9.09720 -8.31624 -7.53669 -5.99271 -4.01343 3.33567 3.38179 3.40393 3.85093 4.46009 4.79357 5.00673 5.07211 5.29323 5.35403 5.37704 5.41800 5.63565 5.66742 5.92932 5.99145 6.12862 6.17484 6.29384 6.34849 6.41418 6.43990 6.48762 6.85229 6.93898 7.00788 7.29244 7.49578 7.57754 7.74664 7.82871 8.02406 8.43503 9.04253 9.61814 11.11765 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038305 B = 0.007830 C = 0.007024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.797637 B = 3575.204373 C = 3985.364092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.084 3.916 4 H 0.069 0.931 5 C -0.152 4.152 6 C 0.030 3.970 7 N -0.515 5.515 8 C 0.070 3.930 9 H 0.071 0.929 10 C -0.127 4.127 11 C -0.006 4.006 12 C -0.515 4.515 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.032 3.968 21 H 0.038 0.962 22 H 0.082 0.918 23 H 0.038 0.962 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.019 0.981 32 H 0.024 0.976 33 H 0.261 0.739 34 H 0.078 0.922 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.041 5.105 -2.258 12.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C 0.026 3.974 4 H 0.087 0.913 5 C -0.190 4.190 6 C -0.098 4.098 7 N -0.240 5.240 8 C -0.038 4.038 9 H 0.089 0.911 10 C -0.184 4.184 11 C -0.044 4.044 12 C -0.554 4.554 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.096 4.096 21 H 0.057 0.943 22 H 0.101 0.899 23 H 0.056 0.944 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.040 5.271 -2.421 12.471 hybrid contribution 1.045 -0.764 0.461 1.374 sum -9.995 4.508 -1.960 11.138 Atomic orbital electron populations 1.22723 0.81740 1.02348 0.99596 1.87961 1.19077 1.27883 1.94892 1.23072 0.95045 0.83728 0.95546 0.91319 1.22903 0.97908 1.00500 0.97730 1.22827 0.95086 0.99906 0.91943 1.65117 1.08548 1.36646 1.13691 1.21941 0.84444 0.97205 1.00207 0.91103 1.21676 1.01192 0.96158 0.99417 1.19743 0.96644 0.91897 0.96101 1.21098 0.93187 1.13344 1.27746 0.92574 1.25018 0.98152 0.95961 0.95256 1.69957 1.35827 1.17528 1.30038 0.86674 0.85719 0.77564 0.78146 1.20255 1.21360 1.20248 1.23245 0.91997 0.95258 0.99113 0.94314 0.89941 0.94355 0.90615 0.91799 0.91569 0.91313 0.94228 0.93634 0.91534 0.96271 0.95749 0.92979 0.90394 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.88 101.05 1.10 1.48 16 2 O -0.38 -6.15 10.44 -35.23 -0.37 -6.51 16 3 C 0.08 1.33 3.51 -24.87 -0.09 1.25 16 4 H 0.07 0.96 7.88 -51.93 -0.41 0.55 16 5 C -0.15 -2.37 6.69 -25.37 -0.17 -2.54 16 6 C 0.03 0.54 5.18 -2.75 -0.01 0.52 16 7 N -0.52 -9.71 5.32 -222.51 -1.18 -10.89 16 8 C 0.07 1.48 2.48 -67.71 -0.17 1.31 16 9 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 10 C -0.13 -2.47 8.92 37.16 0.33 -2.13 16 11 C -0.01 -0.16 3.81 -27.89 -0.11 -0.26 16 12 C -0.51 -14.39 8.31 -34.44 -0.29 -14.68 16 13 H 0.06 1.52 7.28 -52.49 -0.38 1.14 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 16 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.03 0.58 6.11 -1.90 -0.01 0.57 16 21 H 0.04 0.39 8.11 -51.93 -0.42 -0.04 16 22 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.07 1.35 5.36 -51.93 -0.28 1.07 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.87 7.09 -51.93 -0.37 0.50 16 30 H 0.07 1.35 7.08 -51.92 -0.37 0.99 16 31 H 0.02 0.53 5.78 -51.93 -0.30 0.23 16 32 H 0.02 0.67 6.18 -51.93 -0.32 0.35 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.08 1.64 5.52 -51.93 -0.29 1.35 16 LS Contribution 274.92 15.07 4.14 4.14 Total: -1.00 -30.10 274.92 -6.85 -36.95 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.65 Total: -1.19 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 0.49 Total: -12.95 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: -0.45 Total: -37.13 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.37 Total: -6.51 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.10 -6.85 -36.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.907 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds