Wall clock time and date at job start Mon Mar 30 2020 17:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00604 * 2 1 4 4 H 1.09002 * 110.63878 * 328.30689 * 3 2 1 5 5 C 1.54597 * 110.72311 * 91.45074 * 3 2 1 6 6 C 1.53992 * 105.13665 * 140.31796 * 5 3 2 7 7 N 1.47902 * 107.06038 * 1.22495 * 6 5 3 8 8 C 1.46899 * 111.00305 * 214.15537 * 7 6 5 9 9 H 1.08993 * 109.47065 * 179.39905 * 8 7 6 10 10 C 1.53004 * 109.46723 * 299.39811 * 8 7 6 11 11 C 1.52993 * 109.47168 * 59.39648 * 8 7 6 12 12 C 1.50698 * 109.47315 * 174.65824 * 11 8 7 13 13 H 1.07998 * 119.99883 * 354.91300 * 12 11 8 14 14 C 1.37878 * 120.00151 * 174.64869 * 12 11 8 15 15 N 1.31512 * 120.00011 * 0.26515 * 14 12 11 16 16 Si 1.86801 * 120.00061 * 180.27661 * 14 12 11 17 17 H 1.48497 * 109.47162 * 59.99136 * 16 14 12 18 18 H 1.48499 * 109.47259 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46838 * 299.98991 * 16 14 12 20 20 C 1.48534 * 105.82031 * 334.67236 * 7 6 5 21 21 H 1.08992 * 109.46832 * 59.99375 * 1 2 3 22 22 H 1.08992 * 109.47198 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46610 * 300.00153 * 1 2 3 24 24 H 1.09001 * 110.30989 * 21.40683 * 5 3 2 25 25 H 1.08997 * 110.31234 * 259.23463 * 5 3 2 26 26 H 1.09005 * 109.91858 * 241.86895 * 6 5 3 27 27 H 1.08997 * 109.91915 * 120.57814 * 6 5 3 28 28 H 1.08999 * 109.47148 * 299.99519 * 10 8 7 29 29 H 1.08993 * 109.47273 * 60.00221 * 10 8 7 30 30 H 1.09007 * 109.46492 * 180.02562 * 10 8 7 31 31 H 1.09004 * 109.46992 * 54.65572 * 11 8 7 32 32 H 1.09004 * 109.47500 * 294.65480 * 11 8 7 33 33 H 0.97000 * 120.00080 * 180.02562 * 15 14 12 34 34 H 1.09000 * 110.66778 * 157.64235 * 20 7 6 35 35 H 1.08996 * 110.66281 * 280.77014 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3738 2.0095 -0.5359 5 6 2.2664 1.7902 1.4455 6 6 3.6257 2.5119 1.3927 7 7 4.0897 2.4612 -0.0107 8 6 5.5526 2.3455 -0.0777 9 1 5.8660 2.2995 -1.1206 10 6 6.1917 3.5628 0.5937 11 6 5.9971 1.0724 0.6451 12 6 7.4814 0.8845 0.4646 13 1 8.0367 1.5544 -0.1752 14 6 8.1315 -0.1392 1.1206 15 7 7.4554 -0.9549 1.8998 16 14 9.9727 -0.3674 0.9030 17 1 10.6803 0.8565 1.3575 18 1 10.4263 -1.5291 1.7092 19 1 10.2753 -0.6108 -0.5303 20 6 3.4336 1.2718 -0.6114 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 2.3154 0.9405 2.1264 25 1 1.4831 2.4811 1.7571 26 1 4.3413 2.0036 2.0391 27 1 3.5081 3.5487 1.7077 28 1 5.8751 4.4698 0.0788 29 1 5.8783 3.6088 1.6366 30 1 7.2772 3.4771 0.5436 31 1 5.4690 0.2148 0.2283 32 1 5.7684 1.1589 1.7073 33 1 7.9128 -1.6749 2.3616 34 1 3.3884 1.3643 -1.6966 35 1 3.9545 0.3587 -0.3235 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591015708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:11:16 Heat of formation + Delta-G solvation = -66.098510 kcal Electronic energy + Delta-G solvation = -14914.571521 eV Core-core repulsion = 12525.673687 eV Total energy + Delta-G solvation = -2388.897834 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.65027 -38.35762 -35.49394 -33.83464 -30.29678 -29.80964 -28.60688 -26.94307 -25.37614 -23.46315 -21.89743 -20.15819 -18.82046 -17.75487 -17.04432 -16.54661 -15.87813 -15.75550 -15.51471 -15.04729 -14.74125 -14.43388 -13.80198 -13.44183 -13.16119 -12.93014 -12.75096 -12.63718 -12.38148 -12.28605 -12.22916 -12.18938 -11.67928 -11.51694 -11.35318 -11.20945 -10.54763 -10.48421 -9.20754 -8.19358 -6.29850 1.38789 1.41737 1.49408 2.39934 2.66671 3.13144 3.37609 3.67373 3.76716 4.06113 4.27999 4.31040 4.48422 4.53369 4.58577 4.60945 4.69825 4.75763 4.85856 4.88600 4.94660 5.04213 5.10643 5.15073 5.21099 5.39325 5.51970 5.55165 5.72707 6.02075 6.05499 6.31925 6.36966 6.86035 7.38222 8.91793 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038305 B = 0.007830 C = 0.007024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.797637 B = 3575.204373 C = 3985.364092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.093 3.907 4 H 0.098 0.902 5 C -0.147 4.147 6 C 0.029 3.971 7 N -0.503 5.503 8 C 0.077 3.923 9 H 0.067 0.933 10 C -0.119 4.119 11 C 0.005 3.995 12 C -0.531 4.531 13 H 0.063 0.937 14 C -0.001 4.001 15 N -0.935 5.935 16 Si 0.963 3.037 17 H -0.265 1.265 18 H -0.286 1.286 19 H -0.268 1.268 20 C 0.026 3.974 21 H 0.057 0.943 22 H 0.094 0.906 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.100 0.900 26 H 0.030 0.970 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.054 0.946 31 H -0.011 1.011 32 H -0.003 1.003 33 H 0.261 0.739 34 H 0.090 0.910 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.645 6.587 -2.925 13.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C 0.035 3.965 4 H 0.116 0.884 5 C -0.185 4.185 6 C -0.099 4.099 7 N -0.227 5.227 8 C -0.031 4.031 9 H 0.085 0.915 10 C -0.176 4.176 11 C -0.033 4.033 12 C -0.569 4.569 13 H 0.082 0.918 14 C -0.198 4.198 15 N -0.575 5.575 16 Si 0.787 3.213 17 H -0.189 1.189 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.102 4.102 21 H 0.076 0.924 22 H 0.112 0.888 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.118 0.882 26 H 0.049 0.951 27 H 0.111 0.889 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.007 0.993 32 H 0.015 0.985 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.660 6.769 -3.096 13.833 hybrid contribution 1.151 -1.259 0.664 1.830 sum -10.509 5.510 -2.432 12.113 Atomic orbital electron populations 1.22984 0.79184 1.03753 1.01144 1.87926 1.21934 1.28161 1.95062 1.23005 0.93726 0.84401 0.95369 0.88376 1.22890 0.97602 1.00420 0.97588 1.22883 0.95421 1.01146 0.90462 1.65151 1.06771 1.36376 1.14446 1.21763 0.86275 0.95723 0.99348 0.91461 1.21586 1.00210 0.96335 0.99501 1.19586 0.95624 0.93319 0.94728 1.21536 0.94424 1.13411 1.27568 0.91847 1.25969 1.03396 0.95614 0.94866 1.70112 1.37955 1.18253 1.31197 0.85532 0.79460 0.77823 0.78441 1.18934 1.21154 1.19253 1.23279 0.93711 0.93157 1.00093 0.92420 0.88802 0.93018 0.92391 0.88166 0.95144 0.88885 0.91273 0.93787 0.92734 0.99339 0.98494 0.92985 0.89126 0.94805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.88 113.37 1.23 1.75 16 2 O -0.41 -12.96 10.44 -148.98 -1.56 -14.52 16 3 C 0.09 2.80 3.51 31.80 0.11 2.91 16 4 H 0.10 2.39 7.88 -2.39 -0.02 2.37 16 5 C -0.15 -4.38 6.69 31.47 0.21 -4.16 16 6 C 0.03 1.00 5.18 86.45 0.45 1.45 16 7 N -0.50 -18.67 5.32 -857.89 -4.56 -23.24 16 8 C 0.08 3.30 2.48 44.91 0.11 3.41 16 9 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 10 C -0.12 -4.51 8.92 71.98 0.64 -3.86 16 11 C 0.01 0.29 3.81 29.85 0.11 0.40 16 12 C -0.53 -30.32 8.31 25.60 0.21 -30.11 16 13 H 0.06 3.45 7.28 -2.91 -0.02 3.42 16 14 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 15 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 16 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 17 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 C 0.03 0.95 6.11 86.65 0.53 1.48 16 21 H 0.06 0.97 8.11 -2.39 -0.02 0.95 16 22 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 1.93 8.07 -2.39 -0.02 1.91 16 25 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.03 1.28 5.36 -2.38 -0.01 1.27 16 27 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.04 1.65 7.09 -2.39 -0.02 1.64 16 30 H 0.05 2.18 7.08 -2.38 -0.02 2.16 16 31 H -0.01 -0.68 5.78 -2.39 -0.01 -0.69 16 32 H 0.00 -0.18 6.18 -2.39 -0.01 -0.20 16 33 H 0.26 15.40 8.31 -92.71 -0.77 14.62 16 34 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.03 1.54 5.52 -2.39 -0.01 1.53 16 Total: -1.00 -66.50 274.92 1.31 -65.18 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.05 Total: 9.91 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 4.08 Total: -26.32 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -4.28 Total: -81.15 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -1.56 Total: -14.52 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -66.50 1.31 -65.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.915 kcal (2) G-P(sol) polarization free energy of solvation -66.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds