Wall clock time and date at job start Mon Mar 30 2020 17:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 O 1.42903 * 109.47280 * 2 1 4 4 C 1.42895 * 114.00531 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47206 * 29.99713 * 4 3 2 6 6 C 1.50697 * 109.47556 * 149.99956 * 4 3 2 7 7 O 1.21210 * 119.99679 * 4.99966 * 6 4 3 8 8 O 1.34308 * 120.00043 * 185.00263 * 6 4 3 9 9 C 1.34922 * 116.99748 * 179.97438 * 8 6 4 10 10 H 1.07996 * 120.00292 * 0.02562 * 9 8 6 11 11 C 1.38761 * 119.99731 * 179.97438 * 9 8 6 12 12 N 1.31438 * 119.99920 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99501 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47518 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47201 * 120.00232 * 13 11 9 16 16 H 1.48499 * 109.47102 * 239.99686 * 13 11 9 17 17 C 1.53003 * 109.47119 * 270.00250 * 4 3 2 18 18 C 1.53001 * 117.51964 * 111.28106 * 17 4 3 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 4 20 20 H 1.09003 * 109.47610 * 60.00005 * 1 2 3 21 21 H 1.09008 * 109.47175 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.47410 * 299.99869 * 1 2 3 23 23 H 1.08997 * 109.47247 * 240.00175 * 2 1 3 24 24 H 1.09003 * 109.47610 * 119.99995 * 2 1 3 25 25 H 0.97006 * 119.99262 * 180.02562 * 12 11 9 26 26 H 1.09002 * 115.54973 * 325.57890 * 17 4 3 27 27 H 1.09001 * 117.49733 * 214.97413 * 18 17 4 28 28 H 1.08995 * 117.49577 * 359.97438 * 18 17 4 29 29 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 30 30 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6017 -0.5147 6 6 3.8341 2.7266 -0.7109 7 8 2.9859 3.5045 -1.0912 8 8 5.1333 2.9931 -0.9227 9 6 5.4259 4.1432 -1.5647 10 1 4.6309 4.8016 -1.8825 11 6 6.7482 4.4806 -1.8156 12 7 7.7157 3.6796 -1.4284 13 14 7.1532 6.0726 -2.7051 14 1 5.8952 6.7898 -3.0338 15 1 7.9969 6.9270 -1.8313 16 1 7.8895 5.7662 -3.9577 17 6 3.9398 1.5002 1.4417 18 6 4.7377 0.2950 1.9435 19 6 5.4504 1.6178 1.6548 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8932 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 8.6401 3.9158 -1.6035 26 1 3.2899 2.0062 2.1557 27 1 4.6127 0.0081 2.9876 28 1 4.8997 -0.5268 1.2462 29 1 6.0815 1.6662 0.7674 30 1 5.7942 2.2011 2.5090 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859867730.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:09:52 Heat of formation + Delta-G solvation = -103.554284 kcal Electronic energy + Delta-G solvation = -14589.927317 eV Core-core repulsion = 11965.853522 eV Total energy + Delta-G solvation = -2624.073795 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.40446 -37.75540 -36.09716 -34.94156 -32.09539 -31.22161 -27.70407 -25.04474 -22.67549 -21.94380 -21.39578 -19.68159 -17.73263 -16.86082 -16.30562 -15.68103 -14.85071 -14.68579 -14.32804 -14.26247 -13.48408 -13.01355 -12.36670 -12.16196 -12.04233 -11.57547 -11.29984 -11.11571 -11.04630 -10.92386 -10.38400 -10.31981 -10.11571 -10.01081 -9.69674 -9.36779 -8.70475 -8.54534 -6.38981 -4.05450 3.11562 3.19783 3.27259 3.47536 3.56923 4.06577 4.20896 4.88825 5.04475 5.15355 5.21235 5.26119 5.34658 5.38087 5.48400 5.54306 5.81722 5.88599 5.93344 6.03806 6.19526 6.35473 6.43135 6.62990 6.92729 7.41503 7.50318 7.99069 8.76596 9.11017 9.89336 10.79228 Molecular weight = 214.10amu Principal moments of inertia in cm(-1) A = 0.039437 B = 0.008513 C = 0.007298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.814875 B = 3288.463402 C = 3835.952906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.143 3.857 5 H 0.084 0.916 6 C 0.403 3.597 7 O -0.537 6.537 8 O -0.209 6.209 9 C -0.380 4.380 10 H 0.095 0.905 11 C 0.043 3.957 12 N -0.866 5.866 13 Si 0.941 3.059 14 H -0.266 1.266 15 H -0.276 1.276 16 H -0.277 1.277 17 C -0.177 4.177 18 C -0.183 4.183 19 C -0.153 4.153 20 H 0.063 0.937 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.268 0.732 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.122 0.878 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.634 -7.901 4.718 10.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.083 3.917 5 H 0.101 0.899 6 C 0.248 3.752 7 O -0.432 6.432 8 O -0.116 6.116 9 C -0.456 4.456 10 H 0.113 0.887 11 C -0.161 4.161 12 N -0.504 5.504 13 Si 0.766 3.234 14 H -0.190 1.190 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.195 4.195 18 C -0.220 4.220 19 C -0.190 4.190 20 H 0.082 0.918 21 H 0.087 0.913 22 H 0.081 0.919 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.128 0.872 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.141 0.859 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.740 -7.538 4.600 10.532 hybrid contribution 0.354 0.517 -0.362 0.723 sum -5.387 -7.021 4.238 9.812 Atomic orbital electron populations 1.21715 0.93834 1.01770 1.03275 1.22537 0.95512 0.84101 1.00034 1.87999 1.18990 1.25771 1.94766 1.20745 0.81982 0.95572 0.93379 0.89861 1.22754 0.83188 0.87912 0.81343 1.90566 1.52144 1.49262 1.51255 1.83856 1.22884 1.40318 1.64568 1.21279 0.93050 0.96183 1.35083 0.88741 1.25278 0.94218 0.99301 0.97266 1.69984 0.99769 1.36342 1.44268 0.85634 0.78892 0.80173 0.78693 1.18991 1.20207 1.20239 1.22603 0.96372 1.04024 0.96547 1.23062 1.05292 0.92217 1.01428 1.23087 0.93426 0.97811 1.04659 0.91766 0.91343 0.91894 0.93490 0.93175 0.92213 0.87152 0.89101 0.89014 0.85933 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 37.15 0.38 -1.37 16 2 C 0.05 0.77 6.47 37.15 0.24 1.01 16 3 O -0.36 -6.95 9.53 -55.10 -0.52 -7.47 16 4 C 0.14 2.89 2.87 -27.88 -0.08 2.81 16 5 H 0.08 1.53 7.55 -51.93 -0.39 1.14 16 6 C 0.40 10.55 7.18 36.00 0.26 10.80 16 7 O -0.54 -15.68 15.74 -25.77 -0.41 -16.09 16 8 O -0.21 -5.94 7.93 -20.70 -0.16 -6.10 16 9 C -0.38 -11.32 9.65 30.93 0.30 -11.02 16 10 H 0.09 2.88 6.86 -52.49 -0.36 2.52 16 11 C 0.04 1.21 5.49 -17.53 -0.10 1.11 16 12 N -0.87 -24.92 13.67 55.48 0.76 -24.17 16 13 Si 0.94 21.44 29.55 -169.99 -5.02 16.42 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 C -0.18 -3.15 5.45 -90.61 -0.49 -3.64 16 18 C -0.18 -2.65 10.18 -26.73 -0.27 -2.92 16 19 C -0.15 -2.76 9.55 -26.73 -0.26 -3.02 16 20 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.11 1.93 8.14 -51.93 -0.42 1.50 16 27 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 29 H 0.12 2.63 6.90 -51.93 -0.36 2.27 16 30 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 LS Contribution 267.60 15.07 4.03 4.03 Total: -1.00 -33.12 267.60 -5.39 -38.50 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -4.04 Total: 1.10 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -0.02 Total: -6.23 kcal Atomic # 7 Polarization: -24.92 SS G_CDS: 0.76 Total: -24.17 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -1.09 Total: -29.66 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.12 -5.39 -38.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859867730.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.050 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds