Wall clock time and date at job start Mon Mar 30 2020 17:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34223 * 116.99936 * 2 1 4 4 O 1.20831 * 120.00268 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00042 * 180.02562 * 3 2 1 6 6 C 1.53006 * 112.84824 * 309.66241 * 5 3 2 7 7 C 1.53772 * 113.69313 * 80.93219 * 5 3 2 8 8 C 1.53780 * 87.08378 * 139.99509 * 7 5 3 9 9 O 1.42895 * 113.61515 * 220.02285 * 8 7 5 10 10 C 1.34935 * 117.00017 * 247.49312 * 9 8 7 11 11 H 1.07995 * 119.99872 * 359.97438 * 10 9 8 12 12 C 1.38636 * 120.00140 * 179.97438 * 10 9 8 13 13 N 1.31580 * 120.00009 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99914 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47196 * 89.99993 * 14 12 10 16 16 H 1.48505 * 109.46904 * 209.99941 * 14 12 10 17 17 H 1.48503 * 109.47136 * 329.99836 * 14 12 10 18 18 C 1.53781 * 113.61440 * 178.47185 * 5 3 2 19 19 H 1.08993 * 109.47602 * 60.00116 * 1 2 3 20 20 H 1.09003 * 109.47204 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.46874 * 299.99754 * 1 2 3 22 22 H 1.09001 * 109.46801 * 288.80594 * 6 5 3 23 23 H 1.09001 * 109.46998 * 48.80190 * 6 5 3 24 24 H 1.09000 * 109.47050 * 168.80482 * 6 5 3 25 25 H 1.08998 * 113.61707 * 254.54027 * 7 5 3 26 26 H 1.09001 * 113.61549 * 25.44754 * 7 5 3 27 27 H 1.08998 * 113.62005 * 89.11410 * 8 7 5 28 28 H 0.96997 * 120.00253 * 180.02562 * 13 12 10 29 29 H 1.08996 * 113.61278 * 334.47968 * 18 5 3 30 30 H 1.08999 * 113.61657 * 105.38823 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.2071 0.4070 1.0844 7 6 4.1944 1.0859 -1.3914 8 6 5.1834 2.1998 -1.0096 9 8 5.4679 3.1040 -2.0789 10 6 6.7203 3.0849 -2.5806 11 1 7.4551 2.4065 -2.1727 12 6 7.0640 3.9360 -3.6196 13 7 8.2852 3.9169 -4.1091 14 14 5.7934 5.1098 -4.3246 15 1 5.8434 6.3962 -3.5845 16 1 6.0866 5.3528 -5.7600 17 1 4.4400 4.5135 -4.1898 18 6 4.1077 2.7137 -0.0381 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 4.0198 0.8507 2.0623 23 1 3.7762 -0.5937 1.0509 24 1 5.2818 0.3458 0.9131 25 1 4.6652 0.1125 -1.5293 26 1 3.5287 1.3552 -2.2114 27 1 6.0820 1.8345 -0.5125 28 1 8.5258 4.5126 -4.8357 29 1 3.4183 3.4280 -0.4881 30 1 4.5085 3.0545 0.9165 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224383547.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:08:50 Heat of formation + Delta-G solvation = -101.561269 kcal Electronic energy + Delta-G solvation = -14514.910716 eV Core-core repulsion = 11890.923344 eV Total energy + Delta-G solvation = -2623.987371 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.79330 -38.61813 -36.32771 -35.37006 -31.79172 -29.29750 -27.71216 -25.41537 -24.85203 -23.85288 -20.92083 -18.64269 -17.77078 -17.21365 -16.67510 -16.28261 -15.23075 -14.59150 -14.04660 -13.85792 -13.25001 -13.15679 -12.78120 -12.57461 -12.26521 -12.04852 -11.82178 -11.67804 -10.88701 -10.83271 -10.80395 -10.70348 -10.42501 -10.03463 -9.75411 -9.47320 -9.30041 -8.16879 -6.00164 -3.67717 2.30130 2.76320 3.43432 3.46878 3.64086 4.51997 4.57172 4.69882 4.94311 5.02344 5.03913 5.10479 5.22166 5.35841 5.43006 5.55526 5.73728 5.78568 5.93989 6.09287 6.13102 6.17709 6.36456 6.43395 6.59186 6.75001 7.84572 7.91131 8.35692 9.39838 9.94214 11.12397 Molecular weight = 214.10amu Principal moments of inertia in cm(-1) A = 0.047144 B = 0.007587 C = 0.006997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.781755 B = 3689.864042 C = 4000.569755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.358 6.358 3 C 0.480 3.520 4 O -0.507 6.507 5 C -0.086 4.086 6 C -0.125 4.125 7 C -0.138 4.138 8 C 0.097 3.903 9 O -0.311 6.311 10 C -0.361 4.361 11 H 0.081 0.919 12 C 0.044 3.956 13 N -0.913 5.913 14 Si 0.904 3.096 15 H -0.281 1.281 16 H -0.291 1.291 17 H -0.265 1.265 18 C -0.119 4.119 19 H 0.061 0.939 20 H 0.098 0.902 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.269 0.731 29 H 0.098 0.902 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.942 -8.400 9.396 17.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.323 3.677 4 O -0.394 6.394 5 C -0.087 4.087 6 C -0.182 4.182 7 C -0.176 4.176 8 C 0.037 3.963 9 O -0.226 6.226 10 C -0.439 4.439 11 H 0.099 0.901 12 C -0.153 4.153 13 N -0.558 5.558 14 Si 0.732 3.268 15 H -0.207 1.207 16 H -0.217 1.217 17 H -0.189 1.189 18 C -0.157 4.157 19 H 0.080 0.920 20 H 0.117 0.883 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.088 0.912 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.232 -7.902 9.201 17.226 hybrid contribution -0.670 0.446 -0.321 0.866 sum -12.902 -7.456 8.880 17.347 Atomic orbital electron populations 1.23232 0.77031 1.03372 1.02411 1.86529 1.22864 1.33852 1.84168 1.23676 0.91588 0.81010 0.71416 1.90640 1.66946 1.36487 1.45292 1.21709 0.86004 1.00728 1.00284 1.21602 1.01438 0.98915 0.96291 1.23687 0.99342 1.01469 0.93133 1.23033 0.94621 0.89678 0.88979 1.85317 1.31606 1.57533 1.48129 1.20500 0.85357 1.21685 1.16340 0.90109 1.24315 0.96299 0.98095 0.96569 1.69682 1.17802 1.40265 1.28009 0.86195 0.82339 0.80961 0.77321 1.20682 1.21715 1.18913 1.23395 0.98562 0.93270 1.00456 0.92003 0.88314 0.92137 0.91982 0.91249 0.90587 0.90386 0.89354 0.90148 0.92107 0.88316 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.87 10.23 -39.24 -0.40 -5.27 16 3 C 0.48 7.64 7.02 36.00 0.25 7.89 16 4 O -0.51 -9.34 15.66 -18.75 -0.29 -9.64 16 5 C -0.09 -1.31 1.32 -154.85 -0.21 -1.52 16 6 C -0.13 -1.49 9.02 37.16 0.34 -1.16 16 7 C -0.14 -2.40 7.02 -25.92 -0.18 -2.59 16 8 C 0.10 1.95 4.01 -25.92 -0.10 1.85 16 9 O -0.31 -8.15 8.62 -16.52 -0.14 -8.30 16 10 C -0.36 -10.52 10.31 30.88 0.32 -10.20 16 11 H 0.08 2.42 7.83 -52.49 -0.41 2.01 16 12 C 0.04 1.33 5.49 -17.51 -0.10 1.23 16 13 N -0.91 -28.24 13.96 55.48 0.77 -27.47 16 14 Si 0.90 23.48 28.62 -169.99 -4.86 18.62 16 15 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 17 H -0.26 -6.91 7.11 56.52 0.40 -6.51 16 18 C -0.12 -2.09 6.81 -25.92 -0.18 -2.27 16 19 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 20 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.74 7.88 -51.93 -0.41 0.34 16 24 H 0.08 0.87 7.34 -51.93 -0.38 0.49 16 25 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 26 H 0.09 1.65 8.10 -51.93 -0.42 1.23 16 27 H 0.08 1.54 7.32 -51.93 -0.38 1.16 16 28 H 0.27 7.80 8.31 -40.82 -0.34 7.46 16 29 H 0.10 1.92 7.46 -51.93 -0.39 1.53 16 30 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 LS Contribution 262.96 15.07 3.96 3.96 Total: -1.00 -33.20 262.96 -3.81 -37.00 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: -4.05 Total: -3.57 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 1.21 Total: -5.36 kcal Atomic # 7 Polarization: -28.24 SS G_CDS: 0.77 Total: -27.47 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.84 Total: -23.20 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.86 Total: 18.62 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.20 -3.81 -37.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224383547.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.556 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds