Wall clock time and date at job start Mon Mar 30 2020 17:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.39405 * 119.51104 * 269.72589 * 10 9 7 12 12 C 1.36071 * 120.96497 * 179.71384 * 11 10 9 13 13 C 1.40585 * 119.71130 * 0.55557 * 12 11 10 14 14 N 1.33749 * 121.09390 * 179.68591 * 13 12 11 15 15 C 1.31337 * 119.70695 * 180.02562 * 14 13 12 16 16 C 1.39676 * 120.70825 * 0.02562 * 15 14 13 17 17 N 1.31340 * 120.71166 * 0.02562 * 16 15 14 18 18 C 1.33752 * 119.70451 * 359.97438 * 17 16 15 19 19 C 1.36061 * 119.51606 * 89.99889 * 10 9 7 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08001 * 119.52121 * 359.97438 * 11 10 9 24 24 H 1.07996 * 120.13918 * 180.26071 * 12 11 10 25 25 H 1.08002 * 119.64697 * 179.97438 * 15 14 13 26 26 H 1.07997 * 119.64408 * 179.97438 * 16 15 14 27 27 H 1.07996 * 120.14116 * 359.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.2431 -3.2580 1.2261 12 6 4.6909 -4.5423 1.2651 13 6 4.9384 -5.2307 0.0646 14 7 5.3849 -6.4915 0.0706 15 6 5.6075 -7.1086 -1.0671 16 6 5.3835 -6.4622 -2.2849 17 7 4.9462 -5.2242 -2.3167 18 6 4.7120 -4.5744 -1.1713 19 6 4.2422 -3.2493 -1.1711 20 1 -0.4849 0.8400 0.0004 21 1 3.8786 -0.6821 -0.8838 22 1 3.8711 -0.6785 0.8962 23 1 4.0586 -2.7306 2.1504 24 1 4.8601 -5.0291 2.2142 25 1 5.9685 -8.1265 -1.0611 26 1 5.5726 -6.9859 -3.2103 27 1 4.0638 -2.7369 -2.1049 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250054332.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:09:32 Heat of formation + Delta-G solvation = 36.846770 kcal Electronic energy + Delta-G solvation = -13016.235097 eV Core-core repulsion = 10737.851219 eV Total energy + Delta-G solvation = -2278.383878 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.27342 -38.87409 -35.76262 -35.16824 -33.06837 -31.58333 -29.71584 -26.26655 -25.36003 -23.58741 -22.86501 -19.38741 -18.99857 -18.65542 -17.77988 -16.40521 -15.99887 -15.56656 -15.39311 -15.30808 -14.69796 -14.27724 -13.69471 -13.54148 -12.83156 -12.71236 -12.70377 -12.63897 -12.29098 -11.95434 -11.82424 -11.58942 -10.80290 -10.05383 -9.76796 -9.39820 -8.31209 -6.37805 -0.67225 -0.35066 0.99524 1.38917 1.39843 1.51679 1.93493 2.35124 3.02946 3.07347 3.16471 3.25164 3.37585 3.91078 3.94015 4.20403 4.29556 4.42366 4.52649 4.84493 4.92536 5.01053 5.12041 5.19588 5.30703 5.51972 5.73407 5.79626 6.21663 6.34014 6.68158 6.80244 7.25895 8.85320 Molecular weight = 214.08amu Principal moments of inertia in cm(-1) A = 0.055358 B = 0.007084 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.678366 B = 3951.671568 C = 4095.674551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.239 1.239 7 C -0.524 4.524 8 H 0.026 0.974 9 C 0.018 3.982 10 C -0.032 4.032 11 C -0.093 4.093 12 C -0.087 4.087 13 C 0.045 3.955 14 N -0.445 5.445 15 C 0.074 3.926 16 C 0.080 3.920 17 N -0.462 5.462 18 C 0.064 3.936 19 C -0.114 4.114 20 H 0.268 0.732 21 H 0.034 0.966 22 H 0.047 0.953 23 H 0.149 0.851 24 H 0.160 0.840 25 H 0.222 0.778 26 H 0.218 0.782 27 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.661 -10.858 -1.062 17.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.162 1.162 7 C -0.562 4.562 8 H 0.045 0.955 9 C -0.019 4.019 10 C -0.034 4.034 11 C -0.113 4.113 12 C -0.106 4.106 13 C -0.077 4.077 14 N -0.159 5.159 15 C -0.102 4.102 16 C -0.096 4.096 17 N -0.176 5.176 18 C -0.058 4.058 19 C -0.133 4.133 20 H 0.077 0.923 21 H 0.053 0.947 22 H 0.065 0.935 23 H 0.167 0.833 24 H 0.178 0.822 25 H 0.238 0.762 26 H 0.234 0.766 27 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 13.432 -10.524 -0.921 17.089 hybrid contribution -0.472 0.808 -0.205 0.958 sum 12.960 -9.717 -1.126 16.237 Atomic orbital electron populations 1.70056 1.08434 1.28411 1.51938 1.25988 0.95592 1.03467 0.93737 0.85640 0.79748 0.77878 0.79325 1.19276 1.20873 1.16176 1.21092 0.90568 0.93082 1.51437 0.95516 1.18770 0.94430 0.90099 0.98627 1.20053 0.92625 0.97660 0.93019 1.21181 0.96818 0.94838 0.98457 1.20969 0.98685 0.93737 0.97220 1.19671 1.01273 0.92408 0.94347 1.68679 1.09112 1.06741 1.31362 1.24832 0.94871 1.02714 0.87803 1.24871 0.92614 0.90321 1.01813 1.68673 1.09974 1.10358 1.28629 1.19591 1.00207 0.95757 0.90230 1.20639 1.01032 0.92738 0.98910 0.92260 0.94746 0.93462 0.83320 0.82230 0.76178 0.76558 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.10 13.96 21.45 0.30 -58.80 15 2 C 0.01 0.55 5.47 84.66 0.46 1.01 15 3 Si 0.95 42.86 27.47 68.60 1.88 44.74 15 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 15 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 15 6 H -0.24 -9.70 6.54 99.48 0.65 -9.05 15 7 C -0.52 -29.97 9.65 25.60 0.25 -29.72 15 8 H 0.03 1.72 7.98 -2.91 -0.02 1.70 15 9 C 0.02 0.83 4.14 29.10 0.12 0.95 15 10 C -0.03 -1.32 5.03 -20.09 -0.10 -1.42 15 11 C -0.09 -3.33 9.59 22.05 0.21 -3.12 15 12 C -0.09 -2.82 9.99 22.34 0.22 -2.60 15 13 C 0.05 1.56 6.59 40.29 0.27 1.83 15 14 N -0.44 -12.86 10.46 -188.10 -1.97 -14.83 15 15 C 0.07 1.50 11.21 85.11 0.95 2.46 15 16 C 0.08 1.74 11.21 85.11 0.95 2.69 15 17 N -0.46 -15.11 10.46 -188.09 -1.97 -17.08 15 18 C 0.06 2.40 6.59 40.29 0.27 2.66 15 19 C -0.11 -4.66 9.59 22.34 0.21 -4.45 15 20 H 0.27 15.53 8.31 -92.71 -0.77 14.76 15 21 H 0.03 1.53 7.50 -2.38 -0.02 1.52 15 22 H 0.05 2.04 7.13 -2.39 -0.02 2.02 15 23 H 0.15 4.73 8.06 -2.91 -0.02 4.71 15 24 H 0.16 4.18 8.06 -2.91 -0.02 4.16 15 25 H 0.22 1.98 8.06 -2.91 -0.02 1.96 15 26 H 0.22 2.36 8.06 -2.91 -0.02 2.33 15 27 H 0.13 5.19 8.06 -2.91 -0.02 5.17 15 Total: -1.00 -72.40 243.37 3.18 -69.22 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 1.12 Total: 6.45 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 3.82 Total: -29.71 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -3.64 Total: -90.70 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.74 kcal Total: -72.40 3.18 -69.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250054332.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.068 kcal (2) G-P(sol) polarization free energy of solvation -72.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds