Wall clock time and date at job start Mon Mar 30 2020 17:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00355 * 2 1 4 4 H 1.48504 * 109.47298 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47263 * 300.00321 * 3 2 1 6 6 H 1.48500 * 109.47117 * 60.00061 * 3 2 1 7 7 C 1.37878 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00642 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99569 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46814 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99795 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47047 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.38964 * 55.20207 * 12 11 10 14 14 C 1.52588 * 109.39014 * 174.99881 * 12 11 10 15 15 C 1.52582 * 110.72589 * 190.82477 * 14 12 11 16 16 C 1.53101 * 109.87662 * 289.37626 * 15 14 12 17 17 S 1.81546 * 108.94207 * 63.06789 * 16 15 14 18 18 C 1.53100 * 109.39345 * 295.49396 * 12 11 10 19 19 H 0.97006 * 119.99874 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.46985 * 60.00038 * 9 7 2 21 21 H 1.09003 * 109.47305 * 299.99971 * 9 7 2 22 22 H 1.00900 * 111.00266 * 56.04260 * 10 9 7 23 23 H 1.08998 * 109.47470 * 60.00044 * 11 10 9 24 24 H 1.08998 * 109.47261 * 299.99470 * 11 10 9 25 25 H 1.09003 * 109.22467 * 70.50607 * 14 12 11 26 26 H 1.08998 * 109.22450 * 311.14709 * 14 12 11 27 27 H 1.09002 * 109.39091 * 49.47537 * 15 14 12 28 28 H 1.08996 * 109.39211 * 169.27622 * 15 14 12 29 29 H 1.08995 * 109.57658 * 182.78617 * 16 15 14 30 30 H 1.09006 * 109.57348 * 303.16891 * 16 15 14 31 31 H 1.08996 * 109.57400 * 296.63584 * 18 12 11 32 32 H 1.09004 * 109.57085 * 56.88809 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5051 -4.9070 0.0001 12 6 2.5300 -6.0430 -0.0006 13 1 3.2087 -5.9186 0.8432 14 6 1.8048 -7.3796 0.1255 15 6 2.7955 -8.5081 0.3957 16 6 3.6301 -8.7796 -0.8588 17 16 4.6053 -7.2990 -1.2496 18 6 3.3311 -6.0042 -1.3047 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5566 -0.8902 21 1 0.6246 -2.5571 0.8897 22 1 2.8404 -3.5487 0.7808 23 1 0.8799 -4.9817 -0.8896 24 1 0.8806 -4.9812 0.8903 25 1 1.2693 -7.5863 -0.8012 26 1 1.0908 -7.3244 0.9472 27 1 3.4556 -8.2219 1.2145 28 1 2.2498 -9.4110 0.6696 29 1 4.3014 -9.6187 -0.6763 30 1 2.9692 -9.0131 -1.6936 31 1 2.6645 -6.1835 -2.1482 32 1 3.8039 -5.0282 -1.4139 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307972581.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:08:46 Heat of formation + Delta-G solvation = -26.219476 kcal Electronic energy + Delta-G solvation = -12419.199444 eV Core-core repulsion = 10311.639193 eV Total energy + Delta-G solvation = -2107.560252 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -37.74644 -34.85474 -32.69555 -31.11651 -27.29041 -26.98366 -24.36732 -22.02188 -21.08285 -20.13291 -16.73026 -16.28533 -15.39816 -14.80844 -14.54760 -14.39183 -13.69068 -13.36088 -13.30381 -12.71673 -12.36124 -12.09802 -11.70260 -11.39234 -11.24102 -11.15827 -10.81555 -10.71591 -10.54962 -10.29300 -9.83029 -9.56860 -9.15282 -8.49569 -7.60789 -7.32423 -6.04521 -4.06468 1.89064 2.65650 3.30745 3.38070 3.43441 4.41698 4.61258 4.65476 4.87971 4.97858 5.17550 5.31691 5.36573 5.45472 5.57275 5.60425 5.75436 5.86747 5.94382 5.95480 6.09628 6.21322 6.34882 6.51244 7.22267 7.39810 7.77241 8.10818 8.36118 8.58717 9.03226 9.58804 11.06690 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.059622 B = 0.005601 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.509205 B = 4998.195397 C = 5332.558769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.690 5.690 11 C 0.066 3.934 12 C -0.084 4.084 13 H 0.079 0.921 14 C -0.125 4.125 15 C -0.119 4.119 16 C -0.082 4.082 17 S -0.287 6.287 18 C -0.057 4.057 19 H 0.261 0.739 20 H 0.027 0.973 21 H -0.014 1.014 22 H 0.329 0.671 23 H 0.064 0.936 24 H 0.022 0.978 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.279 -16.032 0.073 16.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.320 5.320 11 C -0.066 4.066 12 C -0.105 4.105 13 H 0.097 0.903 14 C -0.163 4.163 15 C -0.158 4.158 16 C -0.230 4.230 17 S -0.060 6.060 18 C -0.205 4.205 19 H 0.070 0.930 20 H 0.045 0.955 21 H 0.004 0.996 22 H 0.145 0.855 23 H 0.083 0.917 24 H 0.040 0.960 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.333 -15.820 -0.815 16.715 hybrid contribution -1.336 0.801 1.032 1.869 sum 3.997 -15.019 0.217 15.544 Atomic orbital electron populations 1.69974 1.06114 1.26693 1.51036 1.24995 0.94873 0.99420 0.95323 0.86427 0.80099 0.83303 0.77507 1.19612 1.20987 1.21088 1.21229 0.93572 0.90225 1.50190 0.91874 1.19553 0.90601 0.87416 0.95742 1.60668 1.21202 1.01234 1.48910 1.21932 0.94704 0.90002 0.99968 1.21369 0.97407 0.94391 0.97334 0.90303 1.21575 0.98127 0.94121 1.02485 1.21705 0.98094 0.98921 0.97092 1.23379 1.01116 0.97745 1.00779 1.86844 1.19695 1.05891 1.93575 1.23503 0.97605 0.99404 0.99963 0.92967 0.95464 0.99639 0.85475 0.91743 0.95979 0.91851 0.91120 0.90692 0.91206 0.88374 0.90211 0.90395 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.51 -14.57 9.32 -34.44 -0.32 -14.89 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.19 5.06 5.44 -4.97 -0.03 5.03 16 10 N -0.69 -14.43 5.87 -115.06 -0.68 -15.11 16 11 C 0.07 1.12 5.05 -3.82 -0.02 1.10 16 12 C -0.08 -1.16 2.18 -90.78 -0.20 -1.36 16 13 H 0.08 1.12 8.06 -51.93 -0.42 0.70 16 14 C -0.12 -1.40 4.92 -27.16 -0.13 -1.54 16 15 C -0.12 -1.16 5.76 -26.89 -0.15 -1.32 16 16 C -0.08 -0.83 6.43 37.21 0.24 -0.59 16 17 S -0.29 -3.84 22.33 -107.50 -2.40 -6.24 16 18 C -0.06 -0.81 5.65 37.21 0.21 -0.60 16 19 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 20 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 21 H -0.01 -0.39 8.14 -51.93 -0.42 -0.82 16 22 H 0.33 6.64 8.72 -39.29 -0.34 6.30 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.02 0.38 8.09 -51.93 -0.42 -0.04 16 25 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 26 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 27 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.12 1.98 7.65 -51.93 -0.40 1.59 16 LS Contribution 272.37 15.07 4.10 4.10 Total: -1.00 -29.46 272.37 -9.10 -38.55 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.34 Total: 0.84 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -0.50 Total: -12.68 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.06 Total: -41.32 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -2.40 Total: -6.24 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.46 -9.10 -38.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307972581.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.333 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds