Wall clock time and date at job start Mon Mar 30 2020 17:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00355 * 2 1 4 4 H 1.48504 * 109.47298 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47263 * 300.00321 * 3 2 1 6 6 H 1.48500 * 109.47117 * 60.00061 * 3 2 1 7 7 C 1.37878 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00642 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99569 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46814 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99795 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47047 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.38964 * 55.20207 * 12 11 10 14 14 C 1.52588 * 109.39014 * 174.99881 * 12 11 10 15 15 C 1.52582 * 110.72589 * 190.82477 * 14 12 11 16 16 C 1.53101 * 109.87662 * 289.37626 * 15 14 12 17 17 S 1.81546 * 108.94207 * 63.06789 * 16 15 14 18 18 C 1.53100 * 109.39345 * 295.49396 * 12 11 10 19 19 H 0.97006 * 119.99874 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.46985 * 60.00038 * 9 7 2 21 21 H 1.09003 * 109.47305 * 299.99971 * 9 7 2 22 22 H 1.00900 * 111.00266 * 56.04260 * 10 9 7 23 23 H 1.08998 * 109.47470 * 60.00044 * 11 10 9 24 24 H 1.08998 * 109.47261 * 299.99470 * 11 10 9 25 25 H 1.09003 * 109.22467 * 70.50607 * 14 12 11 26 26 H 1.08998 * 109.22450 * 311.14709 * 14 12 11 27 27 H 1.09002 * 109.39091 * 49.47537 * 15 14 12 28 28 H 1.08996 * 109.39211 * 169.27622 * 15 14 12 29 29 H 1.08995 * 109.57658 * 182.78617 * 16 15 14 30 30 H 1.09006 * 109.57348 * 303.16891 * 16 15 14 31 31 H 1.08996 * 109.57400 * 296.63584 * 18 12 11 32 32 H 1.09004 * 109.57085 * 56.88809 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5051 -4.9070 0.0001 12 6 2.5300 -6.0430 -0.0006 13 1 3.2087 -5.9186 0.8432 14 6 1.8048 -7.3796 0.1255 15 6 2.7955 -8.5081 0.3957 16 6 3.6301 -8.7796 -0.8588 17 16 4.6053 -7.2990 -1.2496 18 6 3.3311 -6.0042 -1.3047 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5566 -0.8902 21 1 0.6246 -2.5571 0.8897 22 1 2.8404 -3.5487 0.7808 23 1 0.8799 -4.9817 -0.8896 24 1 0.8806 -4.9812 0.8903 25 1 1.2693 -7.5863 -0.8012 26 1 1.0908 -7.3244 0.9472 27 1 3.4556 -8.2219 1.2145 28 1 2.2498 -9.4110 0.6696 29 1 4.3014 -9.6187 -0.6763 30 1 2.9692 -9.0131 -1.6936 31 1 2.6645 -6.1835 -2.1482 32 1 3.8039 -5.0282 -1.4139 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307972581.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:08:46 Heat of formation + Delta-G solvation = -44.573666 kcal Electronic energy + Delta-G solvation = -12419.995342 eV Core-core repulsion = 10311.639193 eV Total energy + Delta-G solvation = -2108.356149 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.94355 -36.43834 -34.56758 -32.50850 -28.94040 -28.21070 -25.92472 -23.65892 -22.46777 -21.25714 -18.59004 -17.61138 -16.87439 -16.43216 -15.86753 -15.69966 -15.06437 -14.75608 -14.34118 -14.23586 -13.72516 -13.66377 -13.13822 -13.03573 -12.62826 -12.58574 -12.30481 -12.12479 -12.07494 -11.71599 -11.46003 -11.04888 -10.69177 -10.55668 -9.12997 -8.65484 -8.24052 -6.35093 0.89448 1.40696 1.41509 1.55476 1.65604 2.39385 3.09608 3.44903 3.67919 3.94175 3.95811 4.07823 4.23231 4.38508 4.59434 4.61549 4.64715 4.77910 4.87276 4.91896 5.07727 5.08381 5.13060 5.21623 5.28240 5.38832 5.60650 6.00804 6.42443 6.70721 6.87701 7.36201 8.87832 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.059622 B = 0.005601 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.509205 B = 4998.195397 C = 5332.558769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.208 3.792 10 N -0.687 5.687 11 C 0.068 3.932 12 C -0.072 4.072 13 H 0.075 0.925 14 C -0.122 4.122 15 C -0.114 4.114 16 C -0.072 4.072 17 S -0.318 6.318 18 C -0.052 4.052 19 H 0.265 0.735 20 H 0.000 1.000 21 H -0.039 1.039 22 H 0.334 0.666 23 H 0.058 0.942 24 H 0.023 0.977 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.008 -17.097 0.365 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.082 0.918 9 C 0.080 3.920 10 N -0.317 5.317 11 C -0.064 4.064 12 C -0.093 4.093 13 H 0.094 0.906 14 C -0.160 4.160 15 C -0.152 4.152 16 C -0.219 4.219 17 S -0.091 6.091 18 C -0.200 4.200 19 H 0.074 0.926 20 H 0.018 0.982 21 H -0.021 1.021 22 H 0.151 0.849 23 H 0.077 0.923 24 H 0.041 0.959 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.116 0.884 29 H 0.136 0.864 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.074 -16.911 -0.520 17.977 hybrid contribution -1.582 1.043 0.935 2.113 sum 4.492 -15.869 0.415 16.498 Atomic orbital electron populations 1.70095 1.07810 1.27961 1.51634 1.25949 0.95780 1.03397 0.94562 0.85279 0.78908 0.78292 0.77782 1.18727 1.20385 1.20214 1.21582 0.93806 0.91474 1.50471 0.91798 1.19199 0.90642 0.88963 0.93173 1.60533 1.20407 1.01574 1.49221 1.22000 0.95510 0.89214 0.99656 1.21259 0.96431 0.94598 0.96989 0.90618 1.21559 0.98438 0.92911 1.03106 1.21677 0.97689 0.99247 0.96635 1.23510 1.01132 0.95941 1.01365 1.86949 1.20628 1.07641 1.93882 1.23328 0.97719 0.98797 1.00179 0.92595 0.98233 1.02145 0.84870 0.92346 0.95873 0.91353 0.90431 0.91054 0.88390 0.86411 0.89176 0.90333 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.54 -30.81 9.32 25.60 0.24 -30.57 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.21 11.23 5.44 85.56 0.47 11.69 16 10 N -0.69 -29.34 5.87 -517.93 -3.04 -32.38 16 11 C 0.07 2.31 5.05 86.30 0.44 2.75 16 12 C -0.07 -1.93 2.18 -10.90 -0.02 -1.95 16 13 H 0.08 2.09 8.06 -2.39 -0.02 2.07 16 14 C -0.12 -2.46 4.92 30.32 0.15 -2.31 16 15 C -0.11 -1.84 5.76 30.49 0.18 -1.66 16 16 C -0.07 -1.24 6.43 72.02 0.46 -0.77 16 17 S -0.32 -8.10 22.33 -56.49 -1.26 -9.36 16 18 C -0.05 -1.47 5.65 72.02 0.41 -1.06 16 19 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 20 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 21 H -0.04 -2.26 8.14 -2.39 -0.02 -2.28 16 22 H 0.33 13.68 8.72 -89.69 -0.78 12.89 16 23 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.02 0.80 8.09 -2.39 -0.02 0.78 16 25 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16 26 H 0.08 1.49 8.05 -2.39 -0.02 1.47 16 27 H 0.07 1.25 8.06 -2.39 -0.02 1.23 16 28 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.10 3.20 7.65 -2.39 -0.02 3.18 16 Total: -1.00 -63.50 272.37 1.08 -62.42 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.29 Total: 12.57 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 2.77 Total: -23.36 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -2.75 Total: -88.91 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.26 Total: -9.36 kcal Total: -63.50 1.08 -62.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307972581.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.849 kcal (2) G-P(sol) polarization free energy of solvation -63.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds