Wall clock time and date at job start Mon Mar 30 2020 17:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99676 * 2 1 4 4 H 1.48504 * 109.47214 * 270.00080 * 3 2 1 5 5 H 1.48497 * 109.47088 * 30.00169 * 3 2 1 6 6 H 1.48504 * 109.46948 * 150.00182 * 3 2 1 7 7 C 1.38812 * 120.00404 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99938 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99866 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99934 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47070 * 35.00369 * 10 9 7 12 12 C 1.53001 * 109.46988 * 275.00265 * 10 9 7 13 13 O 1.42894 * 109.47229 * 295.50039 * 12 10 9 14 14 C 1.53001 * 109.46803 * 155.00374 * 10 9 7 15 15 C 1.53172 * 109.54714 * 303.32419 * 14 10 9 16 16 C 1.53087 * 109.16853 * 183.15555 * 15 14 10 17 17 O 1.42908 * 109.41654 * 57.60772 * 16 15 14 18 18 C 1.42905 * 114.09200 * 298.84802 * 17 16 15 19 19 C 1.53090 * 109.41937 * 61.15784 * 18 17 16 20 20 H 0.97003 * 120.00647 * 359.97438 * 1 2 3 21 21 H 0.97002 * 119.99566 * 0.02562 * 9 7 2 22 22 H 1.08995 * 109.47459 * 55.50898 * 12 10 9 23 23 H 1.09005 * 109.46604 * 175.50120 * 12 10 9 24 24 H 0.96706 * 114.00200 * 180.02562 * 13 12 10 25 25 H 1.09005 * 109.54554 * 63.59679 * 14 10 9 26 26 H 1.09004 * 109.52295 * 303.06164 * 15 14 10 27 27 H 1.09000 * 109.52152 * 63.24407 * 15 14 10 28 28 H 1.09009 * 109.47755 * 297.62811 * 16 15 14 29 29 H 1.08996 * 109.48301 * 177.59287 * 16 15 14 30 30 H 1.08998 * 109.48037 * 301.16391 * 18 17 16 31 31 H 1.09007 * 109.47434 * 181.14369 * 18 17 16 32 32 H 1.09001 * 109.52193 * 182.48339 * 19 18 17 33 33 H 1.09002 * 109.52035 * 62.29493 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9688 -3.5504 0.5889 12 6 2.4221 -4.0355 -1.4376 13 8 1.2276 -4.2771 -2.1836 14 6 1.1810 -4.7521 0.6090 15 6 0.7472 -4.3364 2.0180 16 6 -0.0637 -5.4710 2.6495 17 8 0.7245 -6.6629 2.6719 18 6 1.1194 -7.1255 1.3788 19 6 1.9779 -6.0574 0.6963 20 1 -0.4851 0.8400 0.0004 21 1 0.3556 -2.3880 -0.0005 22 1 2.9796 -3.2199 -1.8982 23 1 3.0354 -4.9366 -1.4315 24 1 1.3828 -4.5231 -3.1058 25 1 0.3003 -4.9036 -0.0153 26 1 1.6292 -4.1366 2.6266 27 1 0.1326 -3.4381 1.9598 28 1 -0.9661 -5.6431 2.0628 29 1 -0.3387 -5.1980 3.6682 30 1 0.2325 -7.3193 0.7756 31 1 1.6966 -8.0444 1.4822 32 1 2.2433 -6.3899 -0.3073 33 1 2.8847 -5.8924 1.2782 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308159756.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:08:56 Heat of formation + Delta-G solvation = -97.030280 kcal Electronic energy + Delta-G solvation = -15282.174846 eV Core-core repulsion = 12728.791137 eV Total energy + Delta-G solvation = -2553.383709 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.21804 -36.86001 -34.61687 -32.99634 -30.82057 -30.51083 -27.52248 -24.65154 -23.60723 -22.78749 -20.38812 -19.43270 -17.27944 -16.53442 -15.84189 -15.69058 -14.86325 -14.46295 -14.11444 -13.95763 -13.45288 -13.10168 -12.94705 -12.10828 -11.95093 -11.69311 -11.20400 -10.98063 -10.87965 -10.81524 -10.30679 -10.14122 -10.03887 -9.83928 -9.59925 -9.35415 -9.06282 -8.83630 -6.90385 -5.73198 -3.00978 3.43944 3.49010 3.50770 4.13393 4.59432 4.97692 5.14405 5.17102 5.28527 5.39992 5.50195 5.56668 5.69416 5.75781 5.84925 5.95086 6.04570 6.14849 6.21256 6.25073 6.35937 6.50411 6.55798 6.75033 6.88074 7.04921 7.45694 7.70032 8.25674 8.45114 9.56638 10.15931 10.51754 11.49268 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.036810 B = 0.008607 C = 0.007629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.477605 B = 3252.392177 C = 3669.291093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.239 4.239 8 H 0.068 0.932 9 N -0.713 5.713 10 C 0.185 3.815 11 H 0.057 0.943 12 C 0.056 3.944 13 O -0.559 6.559 14 C -0.088 4.088 15 C -0.143 4.143 16 C 0.060 3.940 17 O -0.391 6.391 18 C 0.063 3.937 19 C -0.147 4.147 20 H 0.254 0.746 21 H 0.386 0.614 22 H 0.041 0.959 23 H 0.024 0.976 24 H 0.360 0.640 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 -12.341 0.455 12.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.219 1.219 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.086 0.914 9 N -0.353 5.353 10 C 0.074 3.926 11 H 0.075 0.925 12 C -0.025 4.025 13 O -0.362 6.362 14 C -0.107 4.107 15 C -0.180 4.180 16 C -0.016 4.016 17 O -0.310 6.310 18 C -0.013 4.013 19 C -0.186 4.186 20 H 0.064 0.936 21 H 0.221 0.779 22 H 0.059 0.941 23 H 0.042 0.958 24 H 0.204 0.796 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.653 -12.116 1.241 12.465 hybrid contribution 0.486 1.061 -0.997 1.534 sum 3.140 -11.055 0.245 11.495 Atomic orbital electron populations 1.69667 1.05046 1.25506 1.57601 1.24715 0.95472 0.97540 1.03137 0.86233 0.78658 0.84111 0.77434 1.21864 1.21800 1.20841 1.19229 0.90853 0.84270 1.42686 0.91424 1.42306 1.05892 0.99176 1.87930 1.20310 0.94761 0.86742 0.90795 0.92499 1.23163 0.86318 0.96757 0.96228 1.86572 1.32344 1.92039 1.25223 1.21304 0.99368 0.93929 0.96090 1.22137 1.01136 0.98664 0.96108 1.22650 0.92981 0.84764 1.01226 1.87859 1.71872 1.42943 1.28308 1.22520 0.97667 0.96490 0.84659 1.22234 0.99376 0.96172 1.00781 0.93585 0.77950 0.94090 0.95815 0.79631 0.90556 0.91631 0.89539 0.93552 0.89372 0.93553 0.89639 0.91203 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.90 22.51 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.71 -17.97 4.38 -53.43 -0.23 -18.20 16 10 C 0.18 3.73 2.27 -67.93 -0.15 3.57 16 11 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 12 C 0.06 1.02 6.47 37.16 0.24 1.26 16 13 O -0.56 -10.19 12.68 -35.23 -0.45 -10.64 16 14 C -0.09 -1.53 1.76 -90.44 -0.16 -1.69 16 15 C -0.14 -2.50 5.17 -26.60 -0.14 -2.63 16 16 C 0.06 0.91 6.84 37.20 0.25 1.16 16 17 O -0.39 -6.05 10.77 -35.23 -0.38 -6.43 16 18 C 0.06 0.84 6.84 37.20 0.25 1.10 16 19 C -0.15 -2.11 5.07 -26.59 -0.13 -2.24 16 20 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 21 H 0.39 10.58 7.39 -40.82 -0.30 10.28 16 22 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.02 0.36 6.84 -51.93 -0.36 0.00 16 24 H 0.36 4.77 9.12 45.56 0.42 5.18 16 25 H 0.08 1.44 7.46 -51.93 -0.39 1.05 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.09 1.72 7.35 -51.93 -0.38 1.34 16 28 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 32 H 0.07 0.92 6.81 -51.93 -0.35 0.57 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 267.78 15.07 4.04 4.04 Total: -1.00 -31.39 267.78 -5.69 -37.09 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -4.29 Total: 10.94 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -0.08 Total: -6.72 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.49 Total: -45.77 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.83 Total: -17.07 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.39 -5.69 -37.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308159756.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.943 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds