Wall clock time and date at job start Mon Mar 30 2020 17:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 119.99676 * 2 1 4 4 H 1.48504 * 109.47214 * 270.00080 * 3 2 1 5 5 H 1.48497 * 109.47088 * 30.00169 * 3 2 1 6 6 H 1.48504 * 109.46948 * 150.00182 * 3 2 1 7 7 C 1.38812 * 120.00404 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99938 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99866 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99934 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47070 * 35.00369 * 10 9 7 12 12 C 1.53001 * 109.46988 * 275.00265 * 10 9 7 13 13 O 1.42894 * 109.47229 * 295.50039 * 12 10 9 14 14 C 1.53001 * 109.46803 * 155.00374 * 10 9 7 15 15 C 1.53172 * 109.54714 * 303.32419 * 14 10 9 16 16 C 1.53087 * 109.16853 * 183.15555 * 15 14 10 17 17 O 1.42908 * 109.41654 * 57.60772 * 16 15 14 18 18 C 1.42905 * 114.09200 * 298.84802 * 17 16 15 19 19 C 1.53090 * 109.41937 * 61.15784 * 18 17 16 20 20 H 0.97003 * 120.00647 * 359.97438 * 1 2 3 21 21 H 0.97002 * 119.99566 * 0.02562 * 9 7 2 22 22 H 1.08995 * 109.47459 * 55.50898 * 12 10 9 23 23 H 1.09005 * 109.46604 * 175.50120 * 12 10 9 24 24 H 0.96706 * 114.00200 * 180.02562 * 13 12 10 25 25 H 1.09005 * 109.54554 * 63.59679 * 14 10 9 26 26 H 1.09004 * 109.52295 * 303.06164 * 15 14 10 27 27 H 1.09000 * 109.52152 * 63.24407 * 15 14 10 28 28 H 1.09009 * 109.47755 * 297.62811 * 16 15 14 29 29 H 1.08996 * 109.48301 * 177.59287 * 16 15 14 30 30 H 1.08998 * 109.48037 * 301.16391 * 18 17 16 31 31 H 1.09007 * 109.47434 * 181.14369 * 18 17 16 32 32 H 1.09001 * 109.52193 * 182.48339 * 19 18 17 33 33 H 1.09002 * 109.52035 * 62.29493 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9688 -3.5504 0.5889 12 6 2.4221 -4.0355 -1.4376 13 8 1.2276 -4.2771 -2.1836 14 6 1.1810 -4.7521 0.6090 15 6 0.7472 -4.3364 2.0180 16 6 -0.0637 -5.4710 2.6495 17 8 0.7245 -6.6629 2.6719 18 6 1.1194 -7.1255 1.3788 19 6 1.9779 -6.0574 0.6963 20 1 -0.4851 0.8400 0.0004 21 1 0.3556 -2.3880 -0.0005 22 1 2.9796 -3.2199 -1.8982 23 1 3.0354 -4.9366 -1.4315 24 1 1.3828 -4.5231 -3.1058 25 1 0.3003 -4.9036 -0.0153 26 1 1.6292 -4.1366 2.6266 27 1 0.1326 -3.4381 1.9598 28 1 -0.9661 -5.6431 2.0628 29 1 -0.3387 -5.1980 3.6682 30 1 0.2325 -7.3193 0.7756 31 1 1.6966 -8.0444 1.4822 32 1 2.2433 -6.3899 -0.3073 33 1 2.8847 -5.8924 1.2782 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308159756.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:08:56 Heat of formation + Delta-G solvation = -121.429738 kcal Electronic energy + Delta-G solvation = -15283.232886 eV Core-core repulsion = 12728.791137 eV Total energy + Delta-G solvation = -2554.441749 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.50918 -38.31125 -36.21629 -34.74951 -32.42816 -31.96100 -29.20904 -26.18587 -25.30103 -24.13684 -21.83496 -20.91874 -19.19319 -18.07041 -17.20877 -16.86201 -16.62625 -15.83208 -15.56519 -15.43498 -15.21281 -14.78826 -14.32986 -13.65066 -13.38969 -13.10366 -12.86729 -12.78299 -12.53774 -12.20865 -12.13024 -11.88894 -11.63552 -11.29822 -11.13557 -10.93747 -10.66659 -10.34330 -8.95753 -7.91441 -5.18532 1.45877 1.47373 1.55626 2.56280 3.01576 3.40358 3.60789 3.80691 3.86642 4.01938 4.14990 4.21703 4.36121 4.50226 4.55928 4.63595 4.73656 4.82811 4.83568 4.90276 5.03256 5.06508 5.13625 5.29717 5.42170 5.50552 5.60585 6.29325 6.30419 7.07423 7.36027 8.14009 8.37867 9.32122 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.036810 B = 0.008607 C = 0.007629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.477605 B = 3252.392177 C = 3669.291093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.969 3.031 4 H -0.290 1.290 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.236 4.236 8 H 0.074 0.926 9 N -0.724 5.724 10 C 0.174 3.826 11 H 0.054 0.946 12 C 0.065 3.935 13 O -0.579 6.579 14 C -0.079 4.079 15 C -0.139 4.139 16 C 0.067 3.933 17 O -0.400 6.400 18 C 0.060 3.940 19 C -0.140 4.140 20 H 0.249 0.751 21 H 0.371 0.629 22 H 0.021 0.979 23 H 0.065 0.935 24 H 0.382 0.618 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.011 -13.914 0.272 14.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.799 3.201 4 H -0.217 1.217 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.368 4.368 8 H 0.092 0.908 9 N -0.363 5.363 10 C 0.065 3.935 11 H 0.072 0.928 12 C -0.016 4.016 13 O -0.385 6.385 14 C -0.098 4.098 15 C -0.177 4.177 16 C -0.010 4.010 17 O -0.319 6.319 18 C -0.017 4.017 19 C -0.178 4.178 20 H 0.058 0.942 21 H 0.203 0.797 22 H 0.040 0.960 23 H 0.083 0.917 24 H 0.230 0.770 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.106 0.894 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.948 -13.739 1.038 14.333 hybrid contribution 0.128 1.452 -0.967 1.750 sum 4.076 -12.287 0.071 12.946 Atomic orbital electron populations 1.69832 1.06581 1.25752 1.59804 1.25509 0.96309 1.00895 1.04218 0.85195 0.77754 0.79888 0.77263 1.21698 1.22377 1.19421 1.19618 0.91279 0.85378 1.40531 0.90812 1.42457 1.05308 1.00437 1.88120 1.20607 0.94635 0.85649 0.92591 0.92804 1.22915 0.86451 0.97912 0.94284 1.86518 1.32644 1.92173 1.27141 1.21185 0.98732 0.94743 0.95171 1.22047 1.00564 0.98490 0.96601 1.22583 0.92605 0.83912 1.01874 1.87857 1.71871 1.42521 1.29696 1.22730 0.98170 0.96992 0.83763 1.22193 0.99013 0.94447 1.02113 0.94248 0.79682 0.96029 0.91687 0.77002 0.92055 0.92509 0.92851 0.92962 0.88089 0.92882 0.86695 0.89415 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.46 13.06 21.65 0.28 -60.18 16 2 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 3 Si 0.97 46.79 29.55 68.60 2.03 48.82 16 4 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 5 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 7 C -0.24 -13.22 9.93 84.03 0.83 -12.38 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.72 -37.08 4.38 -322.95 -1.41 -38.50 16 10 C 0.17 6.91 2.27 44.99 0.10 7.01 16 11 H 0.05 2.16 8.08 -2.39 -0.02 2.14 16 12 C 0.06 2.23 6.47 71.98 0.47 2.69 16 13 O -0.58 -20.15 12.68 -148.98 -1.89 -22.04 16 14 C -0.08 -2.68 1.76 -10.68 -0.02 -2.70 16 15 C -0.14 -4.87 5.17 30.68 0.16 -4.72 16 16 C 0.07 1.94 6.84 72.01 0.49 2.43 16 17 O -0.40 -11.42 10.77 -148.98 -1.60 -13.02 16 18 C 0.06 1.39 6.84 72.01 0.49 1.88 16 19 C -0.14 -3.58 5.07 30.68 0.16 -3.43 16 20 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 21 H 0.37 21.01 7.39 -92.71 -0.69 20.32 16 22 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.07 1.73 6.84 -2.38 -0.02 1.71 16 24 H 0.38 9.29 9.12 -74.05 -0.68 8.62 16 25 H 0.06 2.28 7.46 -2.38 -0.02 2.26 16 26 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.05 2.21 7.35 -2.39 -0.02 2.19 16 28 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.09 1.96 6.81 -2.39 -0.02 1.94 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -67.58 267.78 0.30 -67.28 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: -0.26 Total: 30.87 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 3.15 Total: -13.24 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -1.13 Total: -98.67 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -3.49 Total: -35.06 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -67.58 0.30 -67.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308159756.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.147 kcal (2) G-P(sol) polarization free energy of solvation -67.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds