Wall clock time and date at job start Mon Mar 30 2020 17:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00031 * 2 1 4 4 C 1.52999 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46903 * 185.00121 * 4 3 2 6 6 N 1.46493 * 109.47638 * 64.99680 * 4 3 2 7 7 C 1.36945 * 119.99892 * 84.99908 * 6 4 3 8 8 H 1.08000 * 119.99422 * 359.72792 * 7 6 4 9 9 C 1.38811 * 120.00031 * 179.72716 * 7 6 4 10 10 N 1.31614 * 119.99700 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 120.00072 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47294 * 90.00155 * 11 9 7 13 13 H 1.48499 * 109.47218 * 210.00015 * 11 9 7 14 14 H 1.48505 * 109.47256 * 330.00020 * 11 9 7 15 15 C 1.53006 * 109.46809 * 304.99540 * 4 3 2 16 16 H 1.08990 * 109.82430 * 300.70626 * 15 4 3 17 17 C 1.54384 * 109.83042 * 179.81508 * 15 4 3 18 18 C 1.55442 * 102.18788 * 219.18620 * 17 15 4 19 19 C 1.54950 * 100.99296 * 34.03935 * 18 17 15 20 20 O 1.43240 * 109.82605 * 61.59417 * 15 4 3 21 21 H 1.09001 * 109.46846 * 59.99790 * 1 2 3 22 22 H 1.08992 * 109.46993 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47079 * 300.00299 * 1 2 3 24 24 H 1.08997 * 109.47298 * 59.99604 * 3 2 1 25 25 H 1.09003 * 109.47040 * 299.99805 * 3 2 1 26 26 H 0.97000 * 120.00738 * 264.73373 * 6 4 3 27 27 H 0.97004 * 120.00256 * 179.97438 * 10 9 7 28 28 H 1.09000 * 110.84657 * 337.32226 * 17 15 4 29 29 H 1.09003 * 110.84410 * 100.94205 * 17 15 4 30 30 H 1.09003 * 111.06375 * 276.12661 * 18 17 15 31 31 H 1.09001 * 111.18461 * 152.00878 * 18 17 15 32 32 H 1.08998 * 110.31472 * 204.69258 * 19 18 17 33 33 H 1.09004 * 110.39557 * 82.56020 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1765 0.0889 6 7 3.9758 0.5643 -1.2526 7 6 4.1676 1.3351 -2.3682 8 1 3.9900 2.3996 -2.3260 9 6 4.5903 0.7482 -3.5530 10 7 4.7741 1.4890 -4.6253 11 14 4.8967 -1.0930 -3.6259 12 1 3.6445 -1.7881 -4.0184 13 1 5.9561 -1.3792 -4.6264 14 1 5.3332 -1.5754 -2.2910 15 6 3.9790 0.3194 1.1808 16 1 3.6434 0.7694 2.1150 17 6 5.5172 0.1881 1.1854 18 6 5.7186 -1.2959 1.6019 19 6 4.4900 -1.9604 0.9312 20 8 3.4308 -0.9976 1.0512 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.6886 1.8464 0.8899 25 1 1.6887 1.8463 -0.8900 26 1 4.1352 -0.3917 -1.2905 27 1 5.0699 1.0790 -5.4532 28 1 5.9251 0.3704 0.1912 29 1 5.9618 0.8618 1.9180 30 1 5.6824 -1.4070 2.6857 31 1 6.6496 -1.6951 1.1995 32 1 4.2258 -2.8805 1.4524 33 1 4.6961 -2.1671 -0.1191 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308404957.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:09:30 Heat of formation + Delta-G solvation = -75.236293 kcal Electronic energy + Delta-G solvation = -15667.705703 eV Core-core repulsion = 13115.267052 eV Total energy + Delta-G solvation = -2552.438651 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.24234 -36.98576 -34.54087 -31.83731 -31.51055 -29.39894 -27.47202 -25.50046 -23.51790 -22.13015 -21.17909 -19.59170 -17.78884 -16.26765 -15.74841 -15.54172 -14.88495 -14.54902 -14.24695 -14.09004 -13.12865 -12.90719 -12.58266 -12.33931 -11.94892 -11.77779 -11.27300 -11.07968 -10.89264 -10.81448 -10.69685 -10.41201 -10.28901 -9.95214 -9.54192 -9.02162 -8.84094 -8.74936 -7.19002 -5.73732 -3.06982 3.40895 3.47346 3.49899 4.29906 4.57943 4.64166 4.88531 5.17277 5.24679 5.41072 5.52859 5.60852 5.68444 5.74571 5.79932 5.93126 5.97272 6.05663 6.06180 6.12917 6.21305 6.24219 6.32523 6.47515 6.64336 6.70748 7.61527 7.94811 8.03762 8.46572 9.26883 9.99742 10.22351 11.44679 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.013949 C = 0.010970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.872113 B = 2006.890958 C = 2551.745448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.354 6.354 3 C 0.046 3.954 4 C 0.171 3.829 5 H 0.076 0.924 6 N -0.734 5.734 7 C -0.242 4.242 8 H 0.089 0.911 9 C 0.005 3.995 10 N -0.935 5.935 11 Si 0.883 3.117 12 H -0.284 1.284 13 H -0.293 1.293 14 H -0.276 1.276 15 C 0.078 3.922 16 H 0.071 0.929 17 C -0.153 4.153 18 C -0.156 4.156 19 C 0.045 3.955 20 O -0.347 6.347 21 H 0.031 0.969 22 H 0.074 0.926 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.049 0.951 26 H 0.367 0.633 27 H 0.258 0.742 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.022 -3.916 13.269 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C -0.034 4.034 4 C 0.061 3.939 5 H 0.094 0.906 6 N -0.377 5.377 7 C -0.372 4.372 8 H 0.107 0.893 9 C -0.190 4.190 10 N -0.583 5.583 11 Si 0.714 3.286 12 H -0.210 1.210 13 H -0.220 1.220 14 H -0.203 1.203 15 C 0.020 3.980 16 H 0.089 0.911 17 C -0.191 4.191 18 C -0.193 4.193 19 C -0.032 4.032 20 O -0.265 6.265 21 H 0.050 0.950 22 H 0.092 0.908 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.067 0.933 26 H 0.201 0.799 27 H 0.068 0.932 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.097 -3.940 13.087 13.828 hybrid contribution 0.143 -0.958 -0.276 1.007 sum -1.954 -4.898 12.812 13.855 Atomic orbital electron populations 1.22614 0.83828 1.01447 0.98674 1.88132 1.16893 1.27193 1.94934 1.23329 0.97007 0.84773 0.98262 1.20719 0.90509 0.95903 0.86787 0.90625 1.42606 1.81049 1.06923 1.07094 1.19097 1.37760 0.92926 0.87374 0.89305 1.24617 1.01645 0.97109 0.95652 1.69701 1.53251 1.34322 1.01052 0.86578 0.77791 0.87332 0.76926 1.21042 1.21981 1.20269 1.22984 0.92263 0.85276 0.97492 0.91083 1.23247 0.96184 0.95847 1.03773 1.23250 0.99202 0.96314 1.00561 1.23367 0.87141 0.92894 0.99784 1.88615 1.29186 1.14458 1.94273 0.94992 0.90758 0.95477 0.95510 0.93308 0.79905 0.93157 0.88653 0.90912 0.91168 0.90621 0.90727 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.09 8.50 -57.57 -0.49 -7.58 16 3 C 0.05 0.88 5.75 37.16 0.21 1.10 16 4 C 0.17 3.41 2.58 -67.93 -0.18 3.23 16 5 H 0.08 1.45 8.08 -51.93 -0.42 1.03 16 6 N -0.73 -17.74 3.91 -53.42 -0.21 -17.95 16 7 C -0.24 -6.82 10.41 -15.06 -0.16 -6.98 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 9 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 10 N -0.94 -29.55 13.97 55.49 0.78 -28.78 16 11 Si 0.88 22.84 27.74 -169.99 -4.71 18.12 16 12 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 13 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 14 H -0.28 -6.70 6.29 56.52 0.36 -6.35 16 15 C 0.08 1.35 3.26 -26.00 -0.08 1.26 16 16 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 17 C -0.15 -2.39 6.44 -24.71 -0.16 -2.55 16 18 C -0.16 -2.17 7.16 -24.40 -0.17 -2.34 16 19 C 0.05 0.74 7.40 38.19 0.28 1.02 16 20 O -0.35 -6.50 8.50 -57.57 -0.49 -6.99 16 21 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.37 9.06 4.25 -40.82 -0.17 8.89 16 27 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 28 H 0.09 1.76 7.17 -51.93 -0.37 1.39 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.02 7.30 -51.93 -0.38 0.65 16 LS Contribution 267.21 15.07 4.03 4.03 Total: -1.00 -32.11 267.21 -5.51 -37.62 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.18 Total: 5.09 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 0.76 Total: -3.57 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.57 Total: -46.73 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.98 Total: -14.57 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.71 Total: 18.12 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.11 -5.51 -37.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308404957.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.614 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds