Wall clock time and date at job start Mon Mar 30 2020 17:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00031 * 2 1 4 4 C 1.52999 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46903 * 185.00121 * 4 3 2 6 6 N 1.46493 * 109.47638 * 64.99680 * 4 3 2 7 7 C 1.36945 * 119.99892 * 84.99908 * 6 4 3 8 8 H 1.08000 * 119.99422 * 359.72792 * 7 6 4 9 9 C 1.38811 * 120.00031 * 179.72716 * 7 6 4 10 10 N 1.31614 * 119.99700 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 120.00072 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47294 * 90.00155 * 11 9 7 13 13 H 1.48499 * 109.47218 * 210.00015 * 11 9 7 14 14 H 1.48505 * 109.47256 * 330.00020 * 11 9 7 15 15 C 1.53006 * 109.46809 * 304.99540 * 4 3 2 16 16 H 1.08990 * 109.82430 * 300.70626 * 15 4 3 17 17 C 1.54384 * 109.83042 * 179.81508 * 15 4 3 18 18 C 1.55442 * 102.18788 * 219.18620 * 17 15 4 19 19 C 1.54950 * 100.99296 * 34.03935 * 18 17 15 20 20 O 1.43240 * 109.82605 * 61.59417 * 15 4 3 21 21 H 1.09001 * 109.46846 * 59.99790 * 1 2 3 22 22 H 1.08992 * 109.46993 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47079 * 300.00299 * 1 2 3 24 24 H 1.08997 * 109.47298 * 59.99604 * 3 2 1 25 25 H 1.09003 * 109.47040 * 299.99805 * 3 2 1 26 26 H 0.97000 * 120.00738 * 264.73373 * 6 4 3 27 27 H 0.97004 * 120.00256 * 179.97438 * 10 9 7 28 28 H 1.09000 * 110.84657 * 337.32226 * 17 15 4 29 29 H 1.09003 * 110.84410 * 100.94205 * 17 15 4 30 30 H 1.09003 * 111.06375 * 276.12661 * 18 17 15 31 31 H 1.09001 * 111.18461 * 152.00878 * 18 17 15 32 32 H 1.08998 * 110.31472 * 204.69258 * 19 18 17 33 33 H 1.09004 * 110.39557 * 82.56020 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1765 0.0889 6 7 3.9758 0.5643 -1.2526 7 6 4.1676 1.3351 -2.3682 8 1 3.9900 2.3996 -2.3260 9 6 4.5903 0.7482 -3.5530 10 7 4.7741 1.4890 -4.6253 11 14 4.8967 -1.0930 -3.6259 12 1 3.6445 -1.7881 -4.0184 13 1 5.9561 -1.3792 -4.6264 14 1 5.3332 -1.5754 -2.2910 15 6 3.9790 0.3194 1.1808 16 1 3.6434 0.7694 2.1150 17 6 5.5172 0.1881 1.1854 18 6 5.7186 -1.2959 1.6019 19 6 4.4900 -1.9604 0.9312 20 8 3.4308 -0.9976 1.0512 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.6886 1.8464 0.8899 25 1 1.6887 1.8463 -0.8900 26 1 4.1352 -0.3917 -1.2905 27 1 5.0699 1.0790 -5.4532 28 1 5.9251 0.3704 0.1912 29 1 5.9618 0.8618 1.9180 30 1 5.6824 -1.4070 2.6857 31 1 6.6496 -1.6951 1.1995 32 1 4.2258 -2.8805 1.4524 33 1 4.6961 -2.1671 -0.1191 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308404957.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:09:30 Heat of formation + Delta-G solvation = -97.446426 kcal Electronic energy + Delta-G solvation = -15668.668807 eV Core-core repulsion = 13115.267052 eV Total energy + Delta-G solvation = -2553.401755 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.60012 -38.42856 -36.36917 -33.82065 -32.76718 -31.18913 -28.81941 -26.88786 -25.43545 -23.63986 -22.37230 -21.19573 -19.80141 -17.72647 -17.21723 -16.95166 -16.34258 -16.19064 -15.89526 -15.69255 -14.81552 -14.42533 -14.14378 -13.82435 -13.50473 -13.30883 -12.99287 -12.72175 -12.44237 -12.20553 -12.11370 -11.92565 -11.86900 -11.62410 -11.45448 -10.95947 -10.39177 -10.16269 -9.26002 -8.01963 -5.31384 1.32823 1.37919 1.43335 2.47514 3.00311 3.19121 3.33362 3.62161 3.73067 3.98236 4.09188 4.34195 4.40153 4.46708 4.51498 4.63857 4.67661 4.75024 4.83608 4.86440 4.92531 4.97138 5.00037 5.11167 5.15364 5.43895 5.77683 6.22038 6.32806 6.55712 7.10144 7.88841 8.08904 9.19737 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.013949 C = 0.010970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.872113 B = 2006.890958 C = 2551.745448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.380 6.380 3 C 0.051 3.949 4 C 0.158 3.842 5 H 0.079 0.921 6 N -0.736 5.736 7 C -0.220 4.220 8 H 0.063 0.937 9 C -0.061 4.061 10 N -0.983 5.983 11 Si 0.943 3.057 12 H -0.289 1.289 13 H -0.294 1.294 14 H -0.254 1.254 15 C 0.081 3.919 16 H 0.101 0.899 17 C -0.153 4.153 18 C -0.144 4.144 19 C 0.036 3.964 20 O -0.367 6.367 21 H 0.026 0.974 22 H 0.088 0.912 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.020 0.980 26 H 0.365 0.635 27 H 0.256 0.744 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.040 -5.127 15.934 16.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.298 6.298 3 C -0.028 4.028 4 C 0.049 3.951 5 H 0.097 0.903 6 N -0.379 5.379 7 C -0.351 4.351 8 H 0.081 0.919 9 C -0.252 4.252 10 N -0.634 5.634 11 Si 0.772 3.228 12 H -0.216 1.216 13 H -0.220 1.220 14 H -0.179 1.179 15 C 0.023 3.977 16 H 0.119 0.881 17 C -0.191 4.191 18 C -0.181 4.181 19 C -0.041 4.041 20 O -0.286 6.286 21 H 0.045 0.955 22 H 0.106 0.894 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.039 0.961 26 H 0.199 0.801 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -2.131 -5.155 15.817 16.772 hybrid contribution 0.058 -0.504 -1.025 1.144 sum -2.073 -5.659 14.792 15.972 Atomic orbital electron populations 1.22799 0.81825 1.02757 0.99621 1.88083 1.19172 1.27427 1.95123 1.23174 0.96261 0.84830 0.98548 1.21073 0.91159 0.96659 0.86197 0.90320 1.42596 1.81255 1.06534 1.07491 1.19099 1.35216 0.92164 0.88606 0.91944 1.25315 1.02937 1.01432 0.95543 1.69856 1.55653 1.36205 1.01722 0.85587 0.77229 0.82144 0.77820 1.21616 1.22049 1.17886 1.23017 0.93256 0.84577 0.96878 0.88132 1.23217 0.95050 0.97980 1.02826 1.23240 0.98409 0.94384 1.02094 1.23515 0.87976 0.93748 0.98826 1.88595 1.30560 1.15182 1.94223 0.95507 0.89358 0.92990 0.92023 0.96147 0.80099 0.93524 0.92054 0.88013 0.88299 0.89716 0.88277 0.95383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.38 -14.57 8.50 -127.62 -1.08 -15.66 16 3 C 0.05 1.89 5.75 71.98 0.41 2.31 16 4 C 0.16 6.09 2.58 44.99 0.12 6.21 16 5 H 0.08 2.95 8.08 -2.39 -0.02 2.93 16 6 N -0.74 -35.41 3.91 -322.94 -1.26 -36.68 16 7 C -0.22 -12.64 10.41 84.03 0.87 -11.77 16 8 H 0.06 3.86 8.06 -2.91 -0.02 3.84 16 9 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 10 N -0.98 -63.96 13.97 21.65 0.30 -63.66 16 11 Si 0.94 47.84 27.74 68.60 1.90 49.74 16 12 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 13 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 14 H -0.25 -11.77 6.29 99.48 0.63 -11.14 16 15 C 0.08 2.55 3.26 31.07 0.10 2.65 16 16 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 17 C -0.15 -4.33 6.44 31.90 0.21 -4.13 16 18 C -0.14 -3.46 7.16 32.10 0.23 -3.23 16 19 C 0.04 1.07 7.40 72.65 0.54 1.61 16 20 O -0.37 -12.76 8.50 -127.62 -1.08 -13.84 16 21 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 22 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 23 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.37 17.78 4.25 -92.71 -0.39 17.39 16 27 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 28 H 0.06 2.17 7.17 -2.39 -0.02 2.15 16 29 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16 30 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.03 0.98 7.30 -2.38 -0.02 0.96 16 Total: -1.00 -70.12 267.21 3.57 -66.55 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.60 Total: 21.07 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 4.19 Total: -7.52 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -0.96 Total: -100.33 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -2.17 Total: -29.50 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 1.90 Total: 49.74 kcal Total: -70.12 3.57 -66.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308404957.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.897 kcal (2) G-P(sol) polarization free energy of solvation -70.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds