Wall clock time and date at job start Mon Mar 30 2020 17:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99881 * 2 1 4 4 C 1.53000 * 109.46880 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46913 * 175.00196 * 4 3 2 6 6 N 1.46498 * 109.47058 * 294.99808 * 4 3 2 7 7 C 1.36939 * 120.00276 * 274.99915 * 6 4 3 8 8 H 1.08001 * 120.00075 * 0.02562 * 7 6 4 9 9 C 1.38810 * 120.00089 * 180.02562 * 7 6 4 10 10 N 1.31617 * 120.00263 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99872 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47631 * 59.99944 * 11 9 7 13 13 H 1.48500 * 109.47015 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47506 * 299.99798 * 11 9 7 15 15 C 1.52994 * 109.47360 * 54.99963 * 4 3 2 16 16 H 1.08998 * 110.67384 * 66.51055 * 15 4 3 17 17 C 1.54994 * 110.62185 * 189.47335 * 15 4 3 18 18 C 1.54807 * 102.09494 * 155.52387 * 17 15 4 19 19 C 1.54106 * 104.18688 * 339.12124 * 18 17 15 20 20 O 1.43739 * 107.29313 * 357.97161 * 19 18 17 21 21 H 1.08996 * 109.47492 * 300.00126 * 1 2 3 22 22 H 1.09001 * 109.47135 * 60.00116 * 1 2 3 23 23 H 1.08999 * 109.47098 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47208 * 59.99821 * 3 2 1 25 25 H 1.08998 * 109.47343 * 299.99987 * 3 2 1 26 26 H 0.97005 * 119.99908 * 95.00381 * 6 4 3 27 27 H 0.97001 * 120.00192 * 180.02562 * 10 9 7 28 28 H 1.09005 * 110.90701 * 37.32905 * 17 15 4 29 29 H 1.09000 * 110.91134 * 273.72820 * 17 15 4 30 30 H 1.08997 * 110.48888 * 220.44580 * 18 17 15 31 31 H 1.09000 * 110.48626 * 97.79808 * 18 17 15 32 32 H 1.09004 * 109.87710 * 117.39475 * 19 18 17 33 33 H 1.08997 * 109.87565 * 238.54037 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9785 2.1765 -0.0889 6 7 3.9756 0.5644 1.2527 7 6 4.1674 1.3352 2.3683 8 1 3.9938 2.4003 2.3251 9 6 4.5850 0.7476 3.5545 10 7 4.7961 -0.5505 3.6073 11 14 4.8459 1.7989 5.0763 12 1 3.5722 2.4712 5.4380 13 1 5.2879 0.9381 6.2028 14 1 5.8846 2.8231 4.7983 15 6 3.9790 0.3194 -1.1806 16 1 3.7632 0.8181 -2.1254 17 6 5.4880 -0.0180 -1.0738 18 6 5.5871 -1.3254 -1.8970 19 6 4.1458 -1.8705 -1.9151 20 8 3.3402 -0.9745 -1.1312 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6885 1.8464 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 4.1312 -0.3923 1.2916 27 1 5.0876 -0.9612 4.4364 28 1 5.7759 -0.1889 -0.0364 29 1 6.0953 0.7696 -1.5199 30 1 6.2567 -2.0336 -1.4091 31 1 5.9275 -1.1131 -2.9105 32 1 3.7746 -1.9026 -2.9395 33 1 4.1217 -2.8689 -1.4785 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308404958.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:09:33 Heat of formation + Delta-G solvation = -76.291206 kcal Electronic energy + Delta-G solvation = -15478.216483 eV Core-core repulsion = 12925.732087 eV Total energy + Delta-G solvation = -2552.484396 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.97022 -36.90147 -34.46136 -31.74268 -31.34660 -28.64552 -27.36137 -25.39250 -23.62830 -22.44422 -20.78062 -19.45703 -17.38369 -15.87089 -15.57604 -15.41113 -14.60409 -14.52129 -14.48870 -13.90421 -13.13594 -12.91723 -12.73120 -12.08187 -11.66319 -11.41167 -11.08342 -10.85696 -10.80000 -10.72312 -10.60746 -10.20721 -10.12699 -9.82936 -9.61573 -8.92532 -8.84029 -8.74940 -6.84859 -5.67936 -2.95796 3.47142 3.51646 3.52765 4.46495 4.62419 4.72162 5.11483 5.28363 5.43766 5.56655 5.61164 5.72599 5.77669 5.86640 5.91074 6.04398 6.06613 6.14912 6.16797 6.23348 6.30641 6.42952 6.49593 6.61411 6.78100 6.95783 7.64148 7.73481 8.07146 8.50130 9.62285 10.22005 10.60094 11.54143 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.026752 B = 0.010891 C = 0.008807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.401612 B = 2570.256679 C = 3178.540174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.347 6.347 3 C 0.045 3.955 4 C 0.183 3.817 5 H 0.071 0.929 6 N -0.706 5.706 7 C -0.242 4.242 8 H 0.068 0.932 9 C -0.011 4.011 10 N -0.927 5.927 11 Si 0.904 3.096 12 H -0.288 1.288 13 H -0.292 1.292 14 H -0.287 1.287 15 C 0.076 3.924 16 H 0.055 0.945 17 C -0.149 4.149 18 C -0.155 4.155 19 C 0.043 3.957 20 O -0.334 6.334 21 H 0.030 0.970 22 H 0.024 0.976 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.023 0.977 26 H 0.393 0.607 27 H 0.255 0.745 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.414 1.021 -11.184 11.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C -0.035 4.035 4 C 0.072 3.928 5 H 0.089 0.911 6 N -0.348 5.348 7 C -0.373 4.373 8 H 0.086 0.914 9 C -0.207 4.207 10 N -0.575 5.575 11 Si 0.735 3.265 12 H -0.214 1.214 13 H -0.218 1.218 14 H -0.214 1.214 15 C 0.017 3.983 16 H 0.073 0.927 17 C -0.187 4.187 18 C -0.193 4.193 19 C -0.035 4.035 20 O -0.252 6.252 21 H 0.048 0.952 22 H 0.043 0.957 23 H 0.093 0.907 24 H 0.063 0.937 25 H 0.041 0.959 26 H 0.228 0.772 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.456 0.904 -10.920 11.229 hybrid contribution 0.057 0.553 0.740 0.926 sum -2.399 1.457 -10.180 10.560 Atomic orbital electron populations 1.22597 0.84084 1.01418 0.98371 1.88182 1.16618 1.26843 1.94815 1.23383 0.97492 0.84908 0.97739 1.20364 0.90318 0.95070 0.87061 0.91136 1.42313 1.79119 1.08378 1.04984 1.19200 1.38002 0.91235 0.88883 0.91435 1.24708 1.02536 0.95686 0.97759 1.69676 1.52579 1.08747 1.26523 0.86323 0.77796 0.79160 0.83192 1.21446 1.21782 1.21369 1.23360 0.91220 0.86341 0.97380 0.92721 1.23204 0.96584 0.95917 1.02990 1.22916 0.97832 0.98511 1.00056 1.23062 0.90054 0.95213 0.95150 1.89197 1.46736 1.18458 1.70825 0.95188 0.95722 0.90742 0.93727 0.95940 0.77163 0.93558 0.88063 0.91507 0.91007 0.91916 0.93839 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.35 -7.33 8.33 -58.14 -0.48 -7.81 16 3 C 0.04 0.89 5.75 37.16 0.21 1.11 16 4 C 0.18 3.80 2.79 -67.93 -0.19 3.61 16 5 H 0.07 1.38 8.08 -51.92 -0.42 0.96 16 6 N -0.71 -18.10 4.03 -53.43 -0.22 -18.31 16 7 C -0.24 -6.73 9.93 -15.06 -0.15 -6.88 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 10 N -0.93 -28.47 13.06 55.49 0.72 -27.74 16 11 Si 0.90 22.56 29.55 -169.99 -5.02 17.54 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 C 0.08 1.39 3.15 -25.68 -0.08 1.31 16 16 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 17 C -0.15 -2.59 6.46 -24.73 -0.16 -2.75 16 18 C -0.16 -2.30 7.01 -25.20 -0.18 -2.47 16 19 C 0.04 0.68 7.70 37.74 0.29 0.98 16 20 O -0.33 -6.66 8.67 -58.14 -0.50 -7.17 16 21 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.39 11.08 7.03 -40.82 -0.29 10.79 16 27 H 0.25 7.58 8.31 -40.82 -0.34 7.25 16 28 H 0.10 2.13 6.68 -51.93 -0.35 1.79 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 271.75 15.07 4.10 4.10 Total: -1.00 -31.31 271.75 -5.89 -37.20 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.25 Total: 6.05 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 0.76 Total: -3.84 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.51 Total: -46.06 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.99 Total: -14.98 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.31 -5.89 -37.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308404958.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.093 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds