Wall clock time and date at job start Mon Mar 30 2020 17:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99881 * 2 1 4 4 C 1.53000 * 109.46880 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46913 * 175.00196 * 4 3 2 6 6 N 1.46498 * 109.47058 * 294.99808 * 4 3 2 7 7 C 1.36939 * 120.00276 * 274.99915 * 6 4 3 8 8 H 1.08001 * 120.00075 * 0.02562 * 7 6 4 9 9 C 1.38810 * 120.00089 * 180.02562 * 7 6 4 10 10 N 1.31617 * 120.00263 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99872 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47631 * 59.99944 * 11 9 7 13 13 H 1.48500 * 109.47015 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47506 * 299.99798 * 11 9 7 15 15 C 1.52994 * 109.47360 * 54.99963 * 4 3 2 16 16 H 1.08998 * 110.67384 * 66.51055 * 15 4 3 17 17 C 1.54994 * 110.62185 * 189.47335 * 15 4 3 18 18 C 1.54807 * 102.09494 * 155.52387 * 17 15 4 19 19 C 1.54106 * 104.18688 * 339.12124 * 18 17 15 20 20 O 1.43739 * 107.29313 * 357.97161 * 19 18 17 21 21 H 1.08996 * 109.47492 * 300.00126 * 1 2 3 22 22 H 1.09001 * 109.47135 * 60.00116 * 1 2 3 23 23 H 1.08999 * 109.47098 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47208 * 59.99821 * 3 2 1 25 25 H 1.08998 * 109.47343 * 299.99987 * 3 2 1 26 26 H 0.97005 * 119.99908 * 95.00381 * 6 4 3 27 27 H 0.97001 * 120.00192 * 180.02562 * 10 9 7 28 28 H 1.09005 * 110.90701 * 37.32905 * 17 15 4 29 29 H 1.09000 * 110.91134 * 273.72820 * 17 15 4 30 30 H 1.08997 * 110.48888 * 220.44580 * 18 17 15 31 31 H 1.09000 * 110.48626 * 97.79808 * 18 17 15 32 32 H 1.09004 * 109.87710 * 117.39475 * 19 18 17 33 33 H 1.08997 * 109.87565 * 238.54037 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9785 2.1765 -0.0889 6 7 3.9756 0.5644 1.2527 7 6 4.1674 1.3352 2.3683 8 1 3.9938 2.4003 2.3251 9 6 4.5850 0.7476 3.5545 10 7 4.7961 -0.5505 3.6073 11 14 4.8459 1.7989 5.0763 12 1 3.5722 2.4712 5.4380 13 1 5.2879 0.9381 6.2028 14 1 5.8846 2.8231 4.7983 15 6 3.9790 0.3194 -1.1806 16 1 3.7632 0.8181 -2.1254 17 6 5.4880 -0.0180 -1.0738 18 6 5.5871 -1.3254 -1.8970 19 6 4.1458 -1.8705 -1.9151 20 8 3.3402 -0.9745 -1.1312 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6885 1.8464 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 4.1312 -0.3923 1.2916 27 1 5.0876 -0.9612 4.4364 28 1 5.7759 -0.1889 -0.0364 29 1 6.0953 0.7696 -1.5199 30 1 6.2567 -2.0336 -1.4091 31 1 5.9275 -1.1131 -2.9105 32 1 3.7746 -1.9026 -2.9395 33 1 4.1217 -2.8689 -1.4785 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308404958.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:09:33 Heat of formation + Delta-G solvation = -97.427592 kcal Electronic energy + Delta-G solvation = -15479.133025 eV Core-core repulsion = 12925.732087 eV Total energy + Delta-G solvation = -2553.400938 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.38692 -38.40510 -36.29216 -33.66630 -32.68633 -30.46781 -28.76262 -26.83430 -25.62726 -23.92264 -22.06183 -21.03599 -19.36847 -17.43826 -17.14291 -16.83939 -16.27666 -16.00446 -15.93759 -15.54067 -15.03402 -14.36942 -14.25004 -13.54984 -13.24442 -13.04921 -12.77578 -12.59421 -12.37631 -12.15513 -12.11209 -12.02384 -11.74315 -11.42582 -11.31902 -10.85210 -10.29620 -10.26487 -8.91132 -7.86456 -5.13449 1.47829 1.50997 1.56753 2.59492 3.09131 3.26879 3.49372 3.79878 3.92264 4.08685 4.20472 4.39648 4.43723 4.46552 4.57479 4.66158 4.69451 4.79741 4.82752 4.90128 4.95444 5.01855 5.09402 5.16045 5.28126 5.50055 5.55149 6.31024 6.34078 6.62600 7.40994 8.19661 8.44852 9.37030 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.026752 B = 0.010891 C = 0.008807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.401612 B = 2570.256679 C = 3178.540174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.379 6.379 3 C 0.050 3.950 4 C 0.171 3.829 5 H 0.082 0.918 6 N -0.717 5.717 7 C -0.237 4.237 8 H 0.078 0.922 9 C -0.077 4.077 10 N -0.969 5.969 11 Si 0.970 3.030 12 H -0.282 1.282 13 H -0.300 1.300 14 H -0.275 1.275 15 C 0.079 3.921 16 H 0.087 0.913 17 C -0.149 4.149 18 C -0.146 4.146 19 C 0.036 3.964 20 O -0.367 6.367 21 H 0.027 0.973 22 H 0.051 0.949 23 H 0.084 0.916 24 H 0.024 0.976 25 H 0.058 0.942 26 H 0.376 0.624 27 H 0.248 0.752 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.691 2.139 -12.917 13.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.297 6.297 3 C -0.029 4.029 4 C 0.061 3.939 5 H 0.100 0.900 6 N -0.356 5.356 7 C -0.369 4.369 8 H 0.095 0.905 9 C -0.269 4.269 10 N -0.620 5.620 11 Si 0.799 3.201 12 H -0.208 1.208 13 H -0.226 1.226 14 H -0.201 1.201 15 C 0.021 3.979 16 H 0.105 0.895 17 C -0.187 4.187 18 C -0.184 4.184 19 C -0.041 4.041 20 O -0.286 6.286 21 H 0.046 0.954 22 H 0.069 0.931 23 H 0.102 0.898 24 H 0.042 0.958 25 H 0.076 0.924 26 H 0.209 0.791 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.754 2.067 -12.698 13.157 hybrid contribution 0.080 0.212 1.171 1.193 sum -2.675 2.280 -11.527 12.051 Atomic orbital electron populations 1.22770 0.82039 1.02538 0.99519 1.88141 1.18994 1.27503 1.95049 1.23237 0.96545 0.84798 0.98368 1.20706 0.91111 0.95899 0.86147 0.89993 1.42425 1.79502 1.07460 1.06257 1.19642 1.35758 0.91859 0.89609 0.90456 1.25504 1.03710 0.96808 1.00860 1.69857 1.54827 1.10580 1.26737 0.85266 0.77925 0.77554 0.79322 1.20838 1.22622 1.20133 1.23363 0.91354 0.85911 0.97288 0.89511 1.23107 0.96501 0.98115 1.00955 1.22888 0.97206 0.96890 1.01377 1.23258 0.90445 0.94401 0.95987 1.89157 1.47929 1.19492 1.72011 0.95408 0.93059 0.89775 0.95798 0.92403 0.79134 0.94362 0.92604 0.89275 0.91313 0.88532 0.91151 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 11.01 113.37 1.25 2.14 16 2 O -0.38 -15.62 8.33 -127.07 -1.06 -16.68 16 3 C 0.05 1.92 5.75 71.98 0.41 2.33 16 4 C 0.17 6.91 2.79 44.99 0.13 7.04 16 5 H 0.08 3.08 8.08 -2.38 -0.02 3.06 16 6 N -0.72 -37.19 4.03 -322.95 -1.30 -38.50 16 7 C -0.24 -13.26 9.93 84.03 0.83 -12.43 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 10 N -0.97 -61.31 13.06 21.65 0.28 -61.03 16 11 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 13 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 14 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 15 C 0.08 2.74 3.15 31.27 0.10 2.84 16 16 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 17 C -0.15 -4.97 6.46 31.89 0.21 -4.76 16 18 C -0.15 -3.99 7.01 31.59 0.22 -3.77 16 19 C 0.04 1.09 7.70 72.36 0.56 1.64 16 20 O -0.37 -14.21 8.67 -127.07 -1.10 -15.31 16 21 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 24 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.38 21.90 7.03 -92.70 -0.65 21.25 16 27 H 0.25 15.27 8.31 -92.71 -0.77 14.49 16 28 H 0.06 2.39 6.68 -2.38 -0.02 2.38 16 29 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -68.28 271.75 3.45 -64.83 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.43 Total: 26.65 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 4.17 Total: -9.00 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -1.02 Total: -99.53 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -2.16 Total: -31.99 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -68.28 3.45 -64.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308404958.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.594 kcal (2) G-P(sol) polarization free energy of solvation -68.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds