Wall clock time and date at job start Mon Mar 30 2020 17:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00220 * 2 1 4 4 H 1.48508 * 109.46857 * 239.99527 * 3 2 1 5 5 H 1.48496 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47350 * 119.99927 * 3 2 1 7 7 C 1.37880 * 119.99584 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99863 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00287 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46999 * 179.97438 * 9 7 2 11 11 N 1.46907 * 109.46906 * 174.66201 * 10 9 7 12 12 C 1.47442 * 110.99810 * 54.41868 * 11 10 9 13 13 C 1.54319 * 107.23333 * 123.25594 * 12 11 10 14 14 H 1.08995 * 110.70905 * 263.90183 * 13 12 11 15 15 O 1.42899 * 110.70557 * 140.83886 * 13 12 11 16 16 C 1.55140 * 103.01469 * 22.28316 * 13 12 11 17 17 H 1.09001 * 110.98943 * 82.43819 * 16 13 12 18 18 C 1.53003 * 110.98794 * 206.25114 * 16 13 12 19 19 O 1.42902 * 109.46918 * 178.72588 * 18 16 13 20 20 C 1.47845 * 110.99710 * 175.26161 * 11 10 9 21 21 H 0.97006 * 119.99731 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47140 * 59.99371 * 9 7 2 23 23 H 1.09005 * 109.46429 * 299.99683 * 9 7 2 24 24 H 1.09002 * 109.47179 * 54.66369 * 10 9 7 25 25 H 1.09001 * 109.47192 * 294.66219 * 10 9 7 26 26 H 1.09000 * 109.88595 * 242.66558 * 12 11 10 27 27 H 1.09007 * 109.88897 * 3.69062 * 12 11 10 28 28 H 0.96697 * 113.99846 * 61.45393 * 15 13 12 29 29 H 1.09000 * 109.47147 * 298.72189 * 18 16 13 30 30 H 1.09002 * 109.47199 * 58.72762 * 18 16 13 31 31 H 0.96706 * 114.00110 * 180.02562 * 19 18 16 32 32 H 1.08991 * 110.37631 * 332.46354 * 20 11 10 33 33 H 1.08999 * 110.36885 * 94.81157 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5151 -4.9305 0.1294 12 6 0.4807 -5.0530 -0.9141 13 6 0.7636 -6.3582 -1.6873 14 1 1.3397 -6.1544 -2.5898 15 8 -0.4562 -7.0292 -2.0094 16 6 1.6004 -7.1877 -0.6781 17 1 0.9555 -7.7001 0.0358 18 6 2.5079 -8.1820 -1.4054 19 8 3.2839 -8.9065 -0.4487 20 6 2.4335 -6.0838 0.0197 21 1 -0.4850 0.8401 -0.0004 22 1 0.6245 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8904 24 1 2.9330 -3.5521 0.8389 25 1 2.8072 -3.6597 -0.9334 26 1 -0.5063 -5.1011 -0.4539 27 1 0.5332 -4.1997 -1.5904 28 1 -1.0479 -6.5180 -2.5783 29 1 1.8972 -8.8783 -1.9800 30 1 3.1734 -7.6414 -2.0784 31 1 3.8839 -9.5562 -0.8399 32 1 3.3005 -5.8223 -0.5869 33 1 2.7477 -6.4142 1.0098 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316307540.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:09:59 Heat of formation + Delta-G solvation = -102.676547 kcal Electronic energy + Delta-G solvation = -14709.592659 eV Core-core repulsion = 12155.964109 eV Total energy + Delta-G solvation = -2553.628550 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.38468 -36.69806 -35.92323 -33.40816 -31.79572 -29.07926 -28.08893 -25.33033 -23.61921 -21.86553 -20.40608 -19.45739 -17.60807 -17.05027 -16.54814 -15.57972 -15.18375 -14.63945 -14.47938 -13.69965 -13.46545 -13.17853 -12.95313 -12.34922 -11.99890 -11.87204 -11.38251 -11.21936 -10.97966 -10.88315 -10.55415 -10.35896 -10.07392 -10.00897 -9.91696 -9.35052 -9.14861 -8.36577 -7.71196 -6.01424 -4.04063 3.32501 3.36962 3.39361 3.93008 4.18990 4.42519 4.60053 4.76649 4.94212 5.08234 5.26114 5.34102 5.37163 5.51630 5.62693 5.80009 5.94870 6.16507 6.22101 6.30487 6.42221 6.43761 6.91337 7.45934 7.47606 7.51901 7.64804 7.72626 7.85521 8.05434 8.40683 9.02497 9.59658 11.09957 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.050664 B = 0.006079 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.531662 B = 4604.689156 C = 4986.405606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.056 3.944 11 N -0.527 5.527 12 C 0.013 3.987 13 C 0.088 3.912 14 H 0.061 0.939 15 O -0.563 6.563 16 C -0.089 4.089 17 H 0.097 0.903 18 C 0.088 3.912 19 O -0.570 6.570 20 C 0.054 3.946 21 H 0.261 0.739 22 H 0.016 0.984 23 H 0.026 0.974 24 H 0.065 0.935 25 H 0.019 0.981 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.380 0.620 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.377 0.623 32 H 0.043 0.957 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.364 -14.178 -5.194 15.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.071 4.071 11 N -0.252 5.252 12 C -0.116 4.116 13 C 0.028 3.972 14 H 0.079 0.921 15 O -0.368 6.368 16 C -0.108 4.108 17 H 0.116 0.884 18 C 0.010 3.990 19 O -0.375 6.375 20 C -0.074 4.074 21 H 0.071 0.929 22 H 0.035 0.965 23 H 0.045 0.955 24 H 0.084 0.916 25 H 0.037 0.963 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.228 0.772 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.223 0.777 32 H 0.062 0.938 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.902 -14.123 -3.913 14.939 hybrid contribution 0.910 1.151 -1.594 2.166 sum 3.812 -12.972 -5.506 14.598 Atomic orbital electron populations 1.69962 1.06045 1.26741 1.50532 1.24996 0.94842 0.99209 0.95230 0.86638 0.79564 0.83058 0.78614 1.20315 1.21247 1.20170 1.21146 0.92973 0.90995 1.51073 0.92779 1.19189 0.94000 0.90396 0.97745 1.22534 0.97244 0.88657 0.98643 1.63674 1.12890 1.02779 1.45827 1.23574 0.98011 0.96241 0.93741 1.23079 0.85536 0.92297 0.96334 0.92073 1.86460 1.31002 1.46576 1.72728 1.22256 0.96005 0.95280 0.97304 0.88441 1.22122 0.92814 0.93583 0.90482 1.86508 1.58255 1.56404 1.36334 1.22998 0.94200 0.89653 1.00536 0.92909 0.96535 0.95536 0.91647 0.96284 0.89954 0.90978 0.77215 0.93232 0.93759 0.77684 0.93849 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.63 4.62 -27.88 -0.13 0.50 16 10 C 0.06 1.22 4.79 -3.82 -0.02 1.20 16 11 N -0.53 -10.09 5.28 -231.25 -1.22 -11.31 16 12 C 0.01 0.22 5.96 -2.84 -0.02 0.20 16 13 C 0.09 1.24 3.78 -24.91 -0.09 1.14 16 14 H 0.06 0.80 8.04 -51.93 -0.42 0.38 16 15 O -0.56 -7.41 13.40 -35.23 -0.47 -7.88 16 16 C -0.09 -1.28 3.05 -88.48 -0.27 -1.55 16 17 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 18 C 0.09 1.02 6.49 37.16 0.24 1.26 16 19 O -0.57 -6.53 13.51 -35.23 -0.48 -7.00 16 20 C 0.05 0.87 6.06 -2.30 -0.01 0.86 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 22 H 0.02 0.45 6.37 -51.93 -0.33 0.12 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 25 H 0.02 0.40 7.97 -51.93 -0.41 -0.01 16 26 H 0.08 1.47 8.06 -51.93 -0.42 1.05 16 27 H 0.07 1.34 5.96 -51.92 -0.31 1.03 16 28 H 0.38 3.49 9.11 45.56 0.42 3.90 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.38 2.39 9.12 45.56 0.42 2.81 16 32 H 0.04 0.68 7.56 -51.93 -0.39 0.29 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 272.70 15.07 4.11 4.11 Total: -1.00 -32.61 272.70 -6.58 -39.20 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -3.53 Total: 2.41 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -0.71 Total: -10.01 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.48 Total: -37.47 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.95 Total: -14.88 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.61 -6.58 -39.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316307540.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.480 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds