Wall clock time and date at job start Mon Mar 30 2020 17:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00220 * 2 1 4 4 H 1.48508 * 109.46857 * 239.99527 * 3 2 1 5 5 H 1.48496 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47350 * 119.99927 * 3 2 1 7 7 C 1.37880 * 119.99584 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99863 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00287 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46999 * 179.97438 * 9 7 2 11 11 N 1.46907 * 109.46906 * 174.66201 * 10 9 7 12 12 C 1.47442 * 110.99810 * 54.41868 * 11 10 9 13 13 C 1.54319 * 107.23333 * 123.25594 * 12 11 10 14 14 H 1.08995 * 110.70905 * 263.90183 * 13 12 11 15 15 O 1.42899 * 110.70557 * 140.83886 * 13 12 11 16 16 C 1.55140 * 103.01469 * 22.28316 * 13 12 11 17 17 H 1.09001 * 110.98943 * 82.43819 * 16 13 12 18 18 C 1.53003 * 110.98794 * 206.25114 * 16 13 12 19 19 O 1.42902 * 109.46918 * 178.72588 * 18 16 13 20 20 C 1.47845 * 110.99710 * 175.26161 * 11 10 9 21 21 H 0.97006 * 119.99731 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47140 * 59.99371 * 9 7 2 23 23 H 1.09005 * 109.46429 * 299.99683 * 9 7 2 24 24 H 1.09002 * 109.47179 * 54.66369 * 10 9 7 25 25 H 1.09001 * 109.47192 * 294.66219 * 10 9 7 26 26 H 1.09000 * 109.88595 * 242.66558 * 12 11 10 27 27 H 1.09007 * 109.88897 * 3.69062 * 12 11 10 28 28 H 0.96697 * 113.99846 * 61.45393 * 15 13 12 29 29 H 1.09000 * 109.47147 * 298.72189 * 18 16 13 30 30 H 1.09002 * 109.47199 * 58.72762 * 18 16 13 31 31 H 0.96706 * 114.00110 * 180.02562 * 19 18 16 32 32 H 1.08991 * 110.37631 * 332.46354 * 20 11 10 33 33 H 1.08999 * 110.36885 * 94.81157 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5151 -4.9305 0.1294 12 6 0.4807 -5.0530 -0.9141 13 6 0.7636 -6.3582 -1.6873 14 1 1.3397 -6.1544 -2.5898 15 8 -0.4562 -7.0292 -2.0094 16 6 1.6004 -7.1877 -0.6781 17 1 0.9555 -7.7001 0.0358 18 6 2.5079 -8.1820 -1.4054 19 8 3.2839 -8.9065 -0.4487 20 6 2.4335 -6.0838 0.0197 21 1 -0.4850 0.8401 -0.0004 22 1 0.6245 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8904 24 1 2.9330 -3.5521 0.8389 25 1 2.8072 -3.6597 -0.9334 26 1 -0.5063 -5.1011 -0.4539 27 1 0.5332 -4.1997 -1.5904 28 1 -1.0479 -6.5180 -2.5783 29 1 1.8972 -8.8783 -1.9800 30 1 3.1734 -7.6414 -2.0784 31 1 3.8839 -9.5562 -0.8399 32 1 3.3005 -5.8223 -0.5869 33 1 2.7477 -6.4142 1.0098 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316307540.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:09:58 Heat of formation + Delta-G solvation = -131.384075 kcal Electronic energy + Delta-G solvation = -14710.837511 eV Core-core repulsion = 12155.964109 eV Total energy + Delta-G solvation = -2554.873402 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.65911 -37.64149 -37.17817 -35.33785 -33.39150 -30.75544 -29.46432 -26.95615 -25.08326 -23.50494 -21.68756 -20.97577 -18.62851 -18.59473 -18.02905 -16.92909 -16.52936 -16.50234 -15.86323 -14.93630 -14.84711 -14.58940 -14.26278 -14.07346 -13.44258 -13.40111 -13.08034 -12.82617 -12.62193 -12.40702 -12.12142 -11.88707 -11.56685 -11.36123 -11.26050 -11.13950 -10.87015 -10.55800 -9.21946 -8.21422 -6.33141 1.40223 1.43506 1.51499 2.39751 2.95745 2.99495 3.12112 3.38589 3.54466 3.92288 4.00133 4.21662 4.31586 4.39176 4.44758 4.51383 4.56898 4.63402 4.80329 4.93140 4.96979 5.03953 5.18790 5.42353 5.60712 5.75916 6.02456 6.14512 6.28419 6.77038 6.82905 6.93059 7.36124 8.90552 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.050664 B = 0.006079 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.531662 B = 4604.689156 C = 4986.405606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.033 3.967 10 C 0.074 3.926 11 N -0.546 5.546 12 C 0.012 3.988 13 C 0.102 3.898 14 H 0.082 0.918 15 O -0.568 6.568 16 C -0.088 4.088 17 H 0.080 0.920 18 C 0.095 3.905 19 O -0.589 6.589 20 C 0.056 3.944 21 H 0.264 0.736 22 H 0.000 1.000 23 H -0.010 1.010 24 H 0.062 0.938 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.398 0.602 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.399 0.601 32 H 0.054 0.946 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.779 -14.698 -6.174 16.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.054 4.054 11 N -0.271 5.271 12 C -0.116 4.116 13 C 0.042 3.958 14 H 0.100 0.900 15 O -0.376 6.376 16 C -0.107 4.107 17 H 0.099 0.901 18 C 0.017 3.983 19 O -0.397 6.397 20 C -0.072 4.072 21 H 0.073 0.927 22 H 0.018 0.982 23 H 0.008 0.992 24 H 0.081 0.919 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.248 0.752 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.249 0.751 32 H 0.072 0.928 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.327 -14.674 -4.909 16.067 hybrid contribution 0.410 1.261 -1.262 1.831 sum 4.737 -13.413 -6.172 15.506 Atomic orbital electron populations 1.70102 1.07854 1.27915 1.51272 1.25967 0.95750 1.03350 0.94493 0.85467 0.78244 0.77904 0.79220 1.18984 1.20773 1.19263 1.21586 0.93568 0.92186 1.51202 0.92084 1.19017 0.94203 0.92118 0.95123 1.22173 0.95917 0.88420 0.98878 1.63544 1.13753 1.02716 1.47088 1.23537 0.96929 0.97829 0.93350 1.22893 0.86160 0.90219 0.96501 0.90010 1.86428 1.31074 1.46806 1.73290 1.22221 0.96108 0.95240 0.97111 0.90128 1.22008 0.92866 0.93345 0.90053 1.86450 1.58907 1.57253 1.37135 1.23014 0.94241 0.88953 1.00951 0.92700 0.98193 0.99191 0.91948 0.95413 0.91341 0.92642 0.75195 0.91957 0.92201 0.75066 0.92782 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.55 -31.47 9.11 25.60 0.23 -31.23 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.77 4.62 29.85 0.14 1.91 16 10 C 0.07 3.21 4.79 86.30 0.41 3.63 16 11 N -0.55 -21.02 5.28 -885.54 -4.67 -25.69 16 12 C 0.01 0.42 5.96 86.65 0.52 0.94 16 13 C 0.10 2.73 3.78 31.78 0.12 2.85 16 14 H 0.08 1.89 8.04 -2.39 -0.02 1.88 16 15 O -0.57 -13.94 13.40 -148.98 -2.00 -15.93 16 16 C -0.09 -2.37 3.05 -9.41 -0.03 -2.40 16 17 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 18 C 0.10 1.93 6.49 71.98 0.47 2.40 16 19 O -0.59 -11.92 13.51 -148.98 -2.01 -13.93 16 20 C 0.06 1.73 6.06 86.77 0.53 2.26 16 21 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 22 H 0.00 -0.01 6.37 -2.39 -0.02 -0.02 16 23 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 24 H 0.06 2.72 8.14 -2.39 -0.02 2.71 16 25 H 0.03 1.15 7.97 -2.39 -0.02 1.13 16 26 H 0.07 2.54 8.06 -2.39 -0.02 2.52 16 27 H 0.06 2.11 5.96 -2.38 -0.01 2.09 16 28 H 0.40 6.61 9.11 -74.06 -0.67 5.94 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 31 H 0.40 3.87 9.12 -74.05 -0.68 3.20 16 32 H 0.05 1.58 7.56 -2.39 -0.02 1.56 16 33 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -70.02 272.70 -3.77 -73.79 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -0.24 Total: 11.32 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 2.85 Total: -19.05 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -4.39 Total: -82.46 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -4.01 Total: -29.86 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -70.02 -3.77 -73.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316307540.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.595 kcal (2) G-P(sol) polarization free energy of solvation -70.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds