Wall clock time and date at job start Mon Mar 30 2020 17:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.48527 * 111.00165 * 52.59886 * 11 10 9 13 13 C 1.54941 * 103.22691 * 159.72187 * 12 11 10 14 14 H 1.09003 * 110.87562 * 81.01364 * 13 12 11 15 15 O 1.42901 * 110.72282 * 204.22585 * 13 12 11 16 16 C 1.54592 * 102.91987 * 322.58917 * 13 12 11 17 17 H 1.09001 * 110.38962 * 262.99199 * 16 13 12 18 18 C 1.53004 * 110.31008 * 140.87319 * 16 13 12 19 19 O 1.42900 * 109.47288 * 177.82659 * 18 16 13 20 20 C 1.47904 * 111.00183 * 170.00139 * 11 10 9 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 25 25 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 26 26 H 1.08996 * 110.67167 * 278.15844 * 12 11 10 27 27 H 1.09000 * 110.67017 * 41.29230 * 12 11 10 28 28 H 0.96694 * 114.00443 * 293.50472 * 15 13 12 29 29 H 1.09002 * 109.46691 * 297.83016 * 18 16 13 30 30 H 1.09004 * 109.46793 * 57.82545 * 18 16 13 31 31 H 0.96703 * 113.99537 * 180.02562 * 19 18 16 32 32 H 1.09001 * 109.91077 * 333.50247 * 20 11 10 33 33 H 1.08997 * 109.91814 * 94.59966 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.5155 -4.9689 -1.1189 13 6 0.2438 -6.4831 -1.3039 14 1 -0.4678 -6.8436 -0.5611 15 8 -0.2264 -6.7547 -2.6257 16 6 1.6369 -7.1142 -1.0782 17 1 2.1300 -7.2973 -2.0329 18 6 1.5073 -8.4190 -0.2897 19 8 2.7980 -9.0124 -0.1352 20 6 2.4232 -6.0721 -0.2615 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.8718 -3.6005 -0.9002 25 1 2.8717 -3.6084 0.8798 26 1 -0.3967 -4.4468 -0.8303 27 1 0.9342 -4.5393 -2.0290 28 1 -1.0969 -6.3803 -2.8182 29 1 1.0838 -8.2093 0.6926 30 1 0.8538 -9.1055 -0.8281 31 1 2.7917 -9.8453 0.3562 32 1 3.2922 -5.7360 -0.8271 33 1 2.7420 -6.5032 0.6874 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316307545.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:10:02 Heat of formation + Delta-G solvation = -104.497724 kcal Electronic energy + Delta-G solvation = -14708.753638 eV Core-core repulsion = 12155.046116 eV Total energy + Delta-G solvation = -2553.707522 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.35233 -36.66267 -35.92057 -33.40810 -31.81291 -29.04677 -28.08777 -25.27037 -23.60632 -21.91006 -19.99352 -19.79680 -17.59142 -17.18533 -16.46073 -15.25808 -15.23111 -14.48733 -14.33991 -14.01217 -13.77189 -12.93955 -12.58970 -12.44546 -12.14788 -11.90279 -11.45980 -11.11656 -10.93741 -10.88535 -10.51612 -10.46549 -10.02960 -9.92036 -9.82593 -9.33928 -9.14514 -8.36285 -7.86676 -6.01434 -4.03674 3.31730 3.37857 3.41598 3.87612 4.29185 4.44411 4.75585 4.76292 4.97462 5.03382 5.33673 5.35733 5.37517 5.51048 5.71440 5.89704 6.07631 6.09193 6.19469 6.32574 6.40139 6.43094 6.90848 7.36876 7.43805 7.53492 7.68228 7.72029 7.84385 8.03241 8.41435 9.02977 9.60174 11.10085 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.052121 B = 0.006055 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.082934 B = 4623.152923 C = 4986.231034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.053 3.947 11 N -0.517 5.517 12 C 0.013 3.987 13 C 0.103 3.897 14 H 0.071 0.929 15 O -0.566 6.566 16 C -0.092 4.092 17 H 0.088 0.912 18 C 0.088 3.912 19 O -0.572 6.572 20 C 0.045 3.955 21 H 0.260 0.740 22 H 0.024 0.976 23 H 0.017 0.983 24 H 0.023 0.977 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.054 0.946 28 H 0.381 0.619 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.377 0.623 32 H 0.044 0.956 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.046 -15.187 -1.286 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.074 4.074 11 N -0.242 5.242 12 C -0.116 4.116 13 C 0.043 3.957 14 H 0.089 0.911 15 O -0.372 6.372 16 C -0.111 4.111 17 H 0.107 0.893 18 C 0.010 3.990 19 O -0.377 6.377 20 C -0.083 4.083 21 H 0.070 0.930 22 H 0.043 0.957 23 H 0.036 0.964 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.072 0.928 28 H 0.229 0.771 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.224 0.776 32 H 0.062 0.938 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.407 -14.882 -1.150 14.931 hybrid contribution 0.144 0.933 -0.428 1.036 sum 0.551 -13.949 -1.578 14.049 Atomic orbital electron populations 1.69968 1.06050 1.26612 1.50741 1.24992 0.94846 0.99222 0.95233 0.86576 0.79865 0.83375 0.78081 1.20695 1.21173 1.19846 1.21193 0.93040 0.91008 1.50837 0.92725 1.19160 0.94016 0.90423 0.97737 1.22533 0.97081 0.88446 0.99327 1.64860 1.13854 1.03843 1.41618 1.23792 0.98331 0.95008 0.94452 1.22713 0.94553 0.94589 0.83834 0.91100 1.86457 1.39769 1.79280 1.31649 1.21924 0.95487 0.93910 0.99757 0.89337 1.22201 0.84407 0.93671 0.98735 1.86491 1.30136 1.41839 1.79267 1.22865 0.94813 0.91348 0.99282 0.92989 0.95732 0.96441 0.95873 0.91660 0.89267 0.92766 0.77148 0.92996 0.93617 0.77643 0.93760 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.63 4.63 -27.88 -0.13 0.50 16 10 C 0.05 1.17 4.97 -3.83 -0.02 1.15 16 11 N -0.52 -9.77 5.40 -230.46 -1.24 -11.02 16 12 C 0.01 0.22 4.82 -1.90 -0.01 0.21 16 13 C 0.10 1.45 3.98 -24.87 -0.10 1.35 16 14 H 0.07 0.90 7.86 -51.93 -0.41 0.50 16 15 O -0.57 -7.52 13.40 -35.23 -0.47 -7.99 16 16 C -0.09 -1.32 3.04 -89.27 -0.27 -1.59 16 17 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16 18 C 0.09 1.02 6.11 37.16 0.23 1.25 16 19 O -0.57 -6.59 13.41 -35.23 -0.47 -7.07 16 20 C 0.05 0.74 6.21 -2.76 -0.02 0.72 16 21 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 22 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.02 0.47 6.79 -51.93 -0.35 0.12 16 24 H 0.02 0.51 7.81 -51.93 -0.41 0.10 16 25 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.09 1.61 7.66 -51.93 -0.40 1.21 16 27 H 0.05 1.02 8.00 -51.93 -0.42 0.61 16 28 H 0.38 3.48 9.12 45.56 0.42 3.89 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.38 2.43 9.12 45.56 0.42 2.84 16 32 H 0.04 0.75 7.57 -51.93 -0.39 0.36 16 33 H 0.08 1.27 7.61 -51.93 -0.40 0.88 16 LS Contribution 272.93 15.07 4.11 4.11 Total: -1.00 -32.70 272.93 -6.68 -39.38 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -3.59 Total: 2.11 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -0.73 Total: -10.10 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.51 Total: -37.21 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.94 Total: -15.06 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.70 -6.68 -39.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316307545.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.121 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds