Wall clock time and date at job start Mon Mar 30 2020 17:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00115 * 2 1 4 4 H 1.48495 * 109.47518 * 270.00587 * 3 2 1 5 5 H 1.48501 * 109.46922 * 30.00681 * 3 2 1 6 6 H 1.48500 * 109.47003 * 150.00351 * 3 2 1 7 7 C 1.37877 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99897 * 359.71954 * 7 2 1 9 9 C 1.50701 * 119.99842 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47002 * 179.72142 * 9 7 2 11 11 N 1.46896 * 109.46986 * 174.86367 * 10 9 7 12 12 C 1.47902 * 110.99916 * 175.71251 * 11 10 9 13 13 C 1.54001 * 107.05507 * 214.15361 * 12 11 10 14 14 H 1.08997 * 110.30534 * 242.30869 * 13 12 11 15 15 O 1.42896 * 110.30763 * 120.23938 * 13 12 11 16 16 C 1.54591 * 105.14018 * 1.22372 * 13 12 11 17 17 H 1.08998 * 110.72342 * 263.59865 * 16 13 12 18 18 C 1.53002 * 110.72401 * 140.49214 * 16 13 12 19 19 O 1.42903 * 109.47248 * 174.99949 * 18 16 13 20 20 C 1.48533 * 111.00226 * 58.31191 * 11 10 9 21 21 H 0.96994 * 119.99569 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47186 * 299.72344 * 9 7 2 23 23 H 1.09005 * 109.46674 * 59.72549 * 9 7 2 24 24 H 1.09000 * 109.46949 * 294.86349 * 10 9 7 25 25 H 1.08995 * 109.47122 * 54.86110 * 10 9 7 26 26 H 1.09001 * 109.91565 * 333.50386 * 12 11 10 27 27 H 1.08997 * 109.92057 * 94.60742 * 12 11 10 28 28 H 0.96707 * 114.00013 * 61.45200 * 15 13 12 29 29 H 1.08997 * 109.47283 * 295.00162 * 18 16 13 30 30 H 1.09005 * 109.47120 * 55.00143 * 18 16 13 31 31 H 0.96692 * 113.99940 * 180.02562 * 19 18 16 32 32 H 1.09000 * 110.66816 * 278.15926 * 20 11 10 33 33 H 1.09001 * 110.66481 * 41.28909 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0036 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 0.0054 11 7 5.4852 -2.6391 -0.1192 12 6 6.0238 -4.0125 -0.0138 13 6 7.3881 -3.9096 0.6930 14 1 8.1831 -4.2570 0.0332 15 8 7.3792 -4.6719 1.9017 16 6 7.5687 -2.4064 1.0055 17 1 8.1687 -1.9217 0.2354 18 6 8.2021 -2.2124 2.3847 19 8 8.4635 -0.8238 2.5978 20 6 6.1148 -1.8713 0.9856 21 1 -0.4849 0.8400 0.0004 22 1 3.8745 -0.6844 -0.8936 23 1 3.8752 -0.6762 0.8864 24 1 3.7356 -3.1189 0.9402 25 1 3.5847 -3.1802 -0.8323 26 1 5.3470 -4.6327 0.5738 27 1 6.1491 -4.4396 -1.0088 28 1 7.2263 -5.6176 1.7691 29 1 7.5191 -2.5756 3.1526 30 1 9.1371 -2.7703 2.4368 31 1 8.8666 -0.6263 3.4542 32 1 6.1008 -0.8032 0.7685 33 1 5.6153 -2.0792 1.9318 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316307548.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:10:04 Heat of formation + Delta-G solvation = -99.783538 kcal Electronic energy + Delta-G solvation = -14883.238469 eV Core-core repulsion = 12329.735369 eV Total energy + Delta-G solvation = -2553.503100 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.51270 -36.57203 -35.99659 -33.27909 -31.79979 -29.89782 -27.85402 -25.57204 -23.72273 -21.45722 -20.26086 -19.68996 -17.75748 -17.07520 -16.78779 -15.56149 -14.90028 -14.66073 -14.35298 -14.07226 -13.47122 -13.32745 -13.05151 -12.49825 -12.34144 -11.95375 -11.39045 -11.19559 -10.82218 -10.81532 -10.73525 -10.32331 -10.10111 -9.83632 -9.71389 -9.63738 -9.17731 -8.50757 -7.97886 -6.02119 -4.00303 3.35902 3.42457 3.48791 3.98386 4.10652 4.49281 4.57812 4.64487 4.77038 5.15947 5.29667 5.32666 5.37575 5.56077 5.70689 5.77658 5.86698 5.93032 6.07605 6.26302 6.31078 6.39877 6.75574 7.13656 7.22541 7.43859 7.50514 7.60988 7.64387 7.85802 8.54956 9.01433 9.60509 11.11198 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.035852 B = 0.007706 C = 0.006676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.797224 B = 3632.483793 C = 4192.968977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.009 4.009 10 C 0.063 3.937 11 N -0.519 5.519 12 C 0.003 3.997 13 C 0.100 3.900 14 H 0.067 0.933 15 O -0.565 6.565 16 C -0.086 4.086 17 H 0.097 0.903 18 C 0.096 3.904 19 O -0.575 6.575 20 C 0.050 3.950 21 H 0.263 0.737 22 H 0.021 0.979 23 H 0.015 0.985 24 H 0.027 0.973 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.080 0.920 28 H 0.378 0.622 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.376 0.624 32 H 0.087 0.913 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.360 -7.478 3.684 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.047 4.047 10 C -0.064 4.064 11 N -0.244 5.244 12 C -0.126 4.126 13 C 0.041 3.959 14 H 0.085 0.915 15 O -0.370 6.370 16 C -0.105 4.105 17 H 0.115 0.885 18 C 0.018 3.982 19 O -0.380 6.380 20 C -0.077 4.077 21 H 0.073 0.927 22 H 0.040 0.960 23 H 0.034 0.966 24 H 0.045 0.955 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.225 0.775 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.223 0.777 32 H 0.105 0.895 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.147 -6.513 2.829 18.559 hybrid contribution 0.124 -0.161 1.003 1.024 sum 17.271 -6.674 3.832 18.908 Atomic orbital electron populations 1.69918 1.06304 1.26907 1.51199 1.24994 0.94727 0.99196 0.94442 0.86756 0.80398 0.83423 0.78634 1.20188 1.21447 1.18876 1.21074 0.89361 0.94517 1.51008 0.91129 1.19588 0.96707 0.91578 0.96843 1.22311 0.84004 1.00669 0.99443 1.64917 1.08134 1.08315 1.43001 1.23637 0.95337 0.93053 1.00565 1.22663 0.96278 0.91473 0.85523 0.91542 1.86509 1.95392 1.23294 1.31853 1.22173 0.97879 0.93095 0.97388 0.88487 1.21872 0.98433 0.81362 0.96518 1.86499 1.84955 1.25409 1.41142 1.23189 0.91452 0.99717 0.93373 0.92739 0.96022 0.96624 0.95464 0.91214 0.92917 0.90186 0.77488 0.92862 0.93720 0.77728 0.89486 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.44 13.96 55.43 0.77 -27.67 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.26 -6.57 6.53 56.52 0.37 -6.20 16 7 C -0.52 -15.31 9.66 -34.44 -0.33 -15.65 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.01 -0.24 3.72 -27.88 -0.10 -0.34 16 10 C 0.06 1.33 4.78 -3.82 -0.02 1.31 16 11 N -0.52 -9.43 5.35 -230.45 -1.23 -10.66 16 12 C 0.00 0.04 6.51 -2.75 -0.02 0.02 16 13 C 0.10 1.20 4.23 -25.37 -0.11 1.10 16 14 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 15 O -0.56 -6.26 11.82 -35.23 -0.42 -6.67 16 16 C -0.09 -1.21 3.29 -88.76 -0.29 -1.51 16 17 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 18 C 0.10 1.22 5.64 37.16 0.21 1.43 16 19 O -0.57 -7.44 13.60 -35.23 -0.48 -7.91 16 20 C 0.05 0.89 4.76 -1.90 -0.01 0.88 16 21 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 22 H 0.02 0.55 7.58 -51.93 -0.39 0.16 16 23 H 0.02 0.39 6.22 -51.93 -0.32 0.07 16 24 H 0.03 0.58 7.97 -51.93 -0.41 0.17 16 25 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 26 H 0.05 0.74 7.48 -51.93 -0.39 0.35 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.38 2.57 9.11 45.56 0.41 2.98 16 29 H 0.05 0.71 7.62 -51.93 -0.40 0.32 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.38 3.00 9.12 45.56 0.42 3.42 16 32 H 0.09 1.67 7.77 -51.93 -0.40 1.26 16 33 H 0.05 0.87 7.83 -51.93 -0.41 0.47 16 LS Contribution 268.72 15.07 4.05 4.05 Total: -1.00 -33.84 268.72 -6.34 -40.18 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -3.59 Total: 1.66 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -0.77 Total: -10.83 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: -0.46 Total: -38.33 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.90 Total: -14.59 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -33.84 -6.34 -40.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316307548.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.602 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds