Wall clock time and date at job start Mon Mar 30 2020 17:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00115 * 2 1 4 4 H 1.48495 * 109.47518 * 270.00587 * 3 2 1 5 5 H 1.48501 * 109.46922 * 30.00681 * 3 2 1 6 6 H 1.48500 * 109.47003 * 150.00351 * 3 2 1 7 7 C 1.37877 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99897 * 359.71954 * 7 2 1 9 9 C 1.50701 * 119.99842 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47002 * 179.72142 * 9 7 2 11 11 N 1.46896 * 109.46986 * 174.86367 * 10 9 7 12 12 C 1.47902 * 110.99916 * 175.71251 * 11 10 9 13 13 C 1.54001 * 107.05507 * 214.15361 * 12 11 10 14 14 H 1.08997 * 110.30534 * 242.30869 * 13 12 11 15 15 O 1.42896 * 110.30763 * 120.23938 * 13 12 11 16 16 C 1.54591 * 105.14018 * 1.22372 * 13 12 11 17 17 H 1.08998 * 110.72342 * 263.59865 * 16 13 12 18 18 C 1.53002 * 110.72401 * 140.49214 * 16 13 12 19 19 O 1.42903 * 109.47248 * 174.99949 * 18 16 13 20 20 C 1.48533 * 111.00226 * 58.31191 * 11 10 9 21 21 H 0.96994 * 119.99569 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47186 * 299.72344 * 9 7 2 23 23 H 1.09005 * 109.46674 * 59.72549 * 9 7 2 24 24 H 1.09000 * 109.46949 * 294.86349 * 10 9 7 25 25 H 1.08995 * 109.47122 * 54.86110 * 10 9 7 26 26 H 1.09001 * 109.91565 * 333.50386 * 12 11 10 27 27 H 1.08997 * 109.92057 * 94.60742 * 12 11 10 28 28 H 0.96707 * 114.00013 * 61.45200 * 15 13 12 29 29 H 1.08997 * 109.47283 * 295.00162 * 18 16 13 30 30 H 1.09005 * 109.47120 * 55.00143 * 18 16 13 31 31 H 0.96692 * 113.99940 * 180.02562 * 19 18 16 32 32 H 1.09000 * 110.66816 * 278.15926 * 20 11 10 33 33 H 1.09001 * 110.66481 * 41.28909 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0036 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 0.0054 11 7 5.4852 -2.6391 -0.1192 12 6 6.0238 -4.0125 -0.0138 13 6 7.3881 -3.9096 0.6930 14 1 8.1831 -4.2570 0.0332 15 8 7.3792 -4.6719 1.9017 16 6 7.5687 -2.4064 1.0055 17 1 8.1687 -1.9217 0.2354 18 6 8.2021 -2.2124 2.3847 19 8 8.4635 -0.8238 2.5978 20 6 6.1148 -1.8713 0.9856 21 1 -0.4849 0.8400 0.0004 22 1 3.8745 -0.6844 -0.8936 23 1 3.8752 -0.6762 0.8864 24 1 3.7356 -3.1189 0.9402 25 1 3.5847 -3.1802 -0.8323 26 1 5.3470 -4.6327 0.5738 27 1 6.1491 -4.4396 -1.0088 28 1 7.2263 -5.6176 1.7691 29 1 7.5191 -2.5756 3.1526 30 1 9.1371 -2.7703 2.4368 31 1 8.8666 -0.6263 3.4542 32 1 6.1008 -0.8032 0.7685 33 1 5.6153 -2.0792 1.9318 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316307548.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:10:04 Heat of formation + Delta-G solvation = -130.244515 kcal Electronic energy + Delta-G solvation = -14884.559356 eV Core-core repulsion = 12329.735369 eV Total energy + Delta-G solvation = -2554.823987 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.66656 -37.60973 -37.11884 -35.24191 -33.43323 -31.46409 -29.20317 -27.05195 -25.27964 -22.92634 -21.67586 -21.05518 -19.08603 -18.63413 -17.99151 -16.82320 -16.35325 -16.18450 -15.84591 -15.35651 -14.87471 -14.73039 -14.42901 -14.24919 -13.77901 -13.41097 -12.99060 -12.87771 -12.37692 -12.08172 -11.85610 -11.82181 -11.76766 -11.67148 -11.38572 -11.02279 -10.81265 -10.76295 -9.42113 -8.34086 -6.38515 1.33308 1.34345 1.47518 2.32874 2.90914 3.01141 3.19940 3.40677 3.57474 3.74682 4.16708 4.21952 4.36530 4.37272 4.44861 4.52916 4.63666 4.69387 4.77120 4.86845 4.93582 5.04715 5.19101 5.22016 5.38045 5.57029 5.91378 6.05243 6.23488 6.68248 6.85554 6.93314 7.26445 8.82498 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.035852 B = 0.007706 C = 0.006676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.797224 B = 3632.483793 C = 4192.968977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.254 1.254 7 C -0.535 4.535 8 H 0.035 0.965 9 C -0.001 4.001 10 C 0.075 3.925 11 N -0.528 5.528 12 C -0.001 4.001 13 C 0.114 3.886 14 H 0.100 0.900 15 O -0.574 6.574 16 C -0.087 4.087 17 H 0.101 0.899 18 C 0.102 3.898 19 O -0.595 6.595 20 C 0.048 3.952 21 H 0.268 0.732 22 H 0.020 0.980 23 H 0.013 0.987 24 H 0.019 0.981 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.099 0.901 28 H 0.398 0.602 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.396 0.604 32 H 0.064 0.936 33 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.932 -7.607 3.678 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.773 3.227 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.574 4.574 8 H 0.053 0.947 9 C -0.039 4.039 10 C -0.053 4.053 11 N -0.252 5.252 12 C -0.129 4.129 13 C 0.054 3.946 14 H 0.118 0.882 15 O -0.383 6.383 16 C -0.106 4.106 17 H 0.119 0.881 18 C 0.024 3.976 19 O -0.404 6.404 20 C -0.080 4.080 21 H 0.077 0.923 22 H 0.038 0.962 23 H 0.031 0.969 24 H 0.037 0.963 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.117 0.883 28 H 0.248 0.752 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.246 0.754 32 H 0.083 0.917 33 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 19.739 -6.674 2.835 21.029 hybrid contribution -0.721 -0.205 1.031 1.275 sum 19.018 -6.879 3.867 20.590 Atomic orbital electron populations 1.70051 1.08109 1.28277 1.52329 1.25939 0.95618 1.03325 0.93906 0.85668 0.79262 0.78438 0.79364 1.18930 1.20457 1.17817 1.21391 0.91696 0.93376 1.50895 0.94683 1.19437 0.93816 0.94239 0.96366 1.21996 0.86521 0.97856 0.98891 1.64834 1.05782 1.11243 1.43355 1.23814 0.96467 0.90469 1.02141 1.22537 0.95643 0.90426 0.85988 0.88245 1.86472 1.95312 1.25009 1.31495 1.22205 0.95228 0.94584 0.98562 0.88125 1.21803 0.99044 0.81518 0.95237 1.86450 1.85341 1.25662 1.42947 1.23142 0.94028 0.98652 0.92197 0.92304 0.96163 0.96919 0.96285 0.91565 0.93049 0.88288 0.75153 0.93901 0.91466 0.75406 0.91710 0.95184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.76 13.96 21.45 0.30 -60.47 16 2 C 0.01 0.57 5.47 84.65 0.46 1.03 16 3 Si 0.95 46.50 27.47 68.60 1.88 48.38 16 4 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.25 -11.95 6.53 99.48 0.65 -11.30 16 7 C -0.54 -32.28 9.66 25.60 0.25 -32.04 16 8 H 0.03 2.29 7.99 -2.91 -0.02 2.27 16 9 C 0.00 -0.04 3.72 29.85 0.11 0.07 16 10 C 0.08 3.22 4.78 86.31 0.41 3.63 16 11 N -0.53 -18.62 5.35 -883.01 -4.73 -23.35 16 12 C 0.00 -0.02 6.51 86.45 0.56 0.54 16 13 C 0.11 2.34 4.23 31.47 0.13 2.47 16 14 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16 15 O -0.57 -10.81 11.82 -148.98 -1.76 -12.58 16 16 C -0.09 -2.24 3.29 -9.59 -0.03 -2.27 16 17 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 18 C 0.10 2.34 5.64 71.98 0.41 2.75 16 19 O -0.60 -14.25 13.60 -148.98 -2.03 -16.28 16 20 C 0.05 1.64 4.76 86.65 0.41 2.06 16 21 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 22 H 0.02 1.02 7.58 -2.39 -0.02 1.00 16 23 H 0.01 0.64 6.22 -2.38 -0.01 0.63 16 24 H 0.02 0.83 7.97 -2.39 -0.02 0.81 16 25 H 0.07 2.83 8.14 -2.39 -0.02 2.82 16 26 H 0.05 1.35 7.48 -2.39 -0.02 1.33 16 27 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.40 3.98 9.11 -74.05 -0.67 3.30 16 29 H 0.04 1.07 7.62 -2.39 -0.02 1.05 16 30 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.40 5.50 9.12 -74.06 -0.68 4.82 16 32 H 0.06 2.48 7.77 -2.39 -0.02 2.46 16 33 H 0.03 1.12 7.83 -2.39 -0.02 1.10 16 Total: -1.00 -73.43 268.72 -3.92 -77.35 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -0.30 Total: 8.69 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: 2.72 Total: -21.76 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -4.43 Total: -83.81 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -3.79 Total: -28.85 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.88 Total: 48.38 kcal Total: -73.43 -3.92 -77.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316307548.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.897 kcal (2) G-P(sol) polarization free energy of solvation -73.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds