Wall clock time and date at job start Mon Mar 30 2020 17:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00002 * 2 1 4 4 C 1.53007 * 109.46930 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47129 * 64.99855 * 4 3 2 6 6 C 1.48720 * 111.01412 * 54.48921 * 5 4 3 7 7 C 1.54380 * 104.51798 * 158.96554 * 6 5 4 8 8 C 1.54264 * 105.15118 * 336.27099 * 7 6 5 9 9 O 1.42892 * 110.32452 * 241.05615 * 8 7 6 10 10 C 1.50694 * 110.32580 * 118.84023 * 8 7 6 11 11 H 1.07996 * 120.00120 * 0.38509 * 10 8 7 12 12 C 1.37883 * 119.99926 * 180.38413 * 10 8 7 13 13 N 1.31513 * 119.99677 * 186.83153 * 12 10 8 14 14 Si 1.86797 * 120.00012 * 6.82955 * 12 10 8 15 15 H 1.48493 * 109.47165 * 94.01979 * 14 12 10 16 16 H 1.48502 * 109.47125 * 214.02234 * 14 12 10 17 17 H 1.48498 * 109.47077 * 334.01765 * 14 12 10 18 18 C 1.48558 * 110.99828 * 169.99702 * 5 4 3 19 19 H 1.08998 * 109.47003 * 180.02562 * 1 2 3 20 20 H 1.08994 * 109.47349 * 300.00620 * 1 2 3 21 21 H 1.09004 * 109.46833 * 60.00261 * 1 2 3 22 22 H 1.08998 * 109.47086 * 59.99787 * 3 2 1 23 23 H 1.08995 * 109.46900 * 299.99720 * 3 2 1 24 24 H 1.08996 * 109.46808 * 304.99796 * 4 3 2 25 25 H 1.08994 * 109.46713 * 184.99839 * 4 3 2 26 26 H 1.09000 * 110.38979 * 40.24402 * 6 5 4 27 27 H 1.08996 * 110.51110 * 277.74990 * 6 5 4 28 28 H 1.08996 * 110.32647 * 217.32480 * 7 6 5 29 29 H 1.09004 * 110.32083 * 95.21288 * 7 6 5 30 30 H 0.96704 * 113.99889 * 298.53736 * 9 8 7 31 31 H 0.97004 * 119.99578 * 179.97438 * 13 12 10 32 32 H 1.09005 * 110.40831 * 82.18389 * 18 5 4 33 33 H 1.08992 * 110.41532 * 319.74151 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9780 0.5622 -1.2543 6 6 3.4529 1.3039 -2.4315 7 6 4.3930 0.9068 -3.5899 8 6 5.7083 0.4724 -2.9108 9 8 6.7851 1.3121 -3.3318 10 6 6.0111 -0.9688 -3.2302 11 1 5.3422 -1.5340 -3.8622 12 6 7.1424 -1.5660 -2.7156 13 7 7.4788 -2.7780 -3.0998 14 14 8.1971 -0.6536 -1.4728 15 1 7.7789 -1.0290 -0.0983 16 1 9.6232 -1.0163 -1.6728 17 1 8.0277 0.8098 -1.6595 18 6 5.4543 0.6444 -1.3977 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 1.6886 1.8464 0.8899 23 1 1.6887 1.8463 -0.8900 24 1 3.8508 0.5685 0.8427 25 1 3.9785 2.1764 0.0902 26 1 3.4999 2.3785 -2.2552 27 1 2.4299 0.9980 -2.6504 28 1 4.5689 1.7604 -4.2444 29 1 3.9674 0.0780 -4.1557 30 1 6.9610 1.2794 -4.2822 31 1 8.2748 -3.1979 -2.7380 32 1 5.9359 -0.1574 -0.8379 33 1 5.8156 1.6155 -1.0596 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328522736.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:10:13 Heat of formation + Delta-G solvation = -103.617748 kcal Electronic energy + Delta-G solvation = -15359.211417 eV Core-core repulsion = 12805.542054 eV Total energy + Delta-G solvation = -2553.669363 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.41811 -38.66985 -36.67864 -34.44089 -32.72739 -30.15318 -29.34783 -27.06370 -25.92124 -24.05671 -21.85255 -21.16442 -19.08515 -17.67611 -17.29173 -17.09883 -16.50407 -16.23189 -15.59343 -15.44511 -15.02907 -14.64780 -14.26370 -13.86450 -13.55283 -13.50731 -13.03332 -12.67608 -12.46053 -12.29993 -12.04903 -12.03230 -11.78788 -11.54908 -10.96934 -10.76244 -10.53066 -10.20111 -9.27444 -8.33191 -6.42569 1.34668 1.39568 1.64416 2.39971 2.89466 3.00185 3.10789 3.72529 3.91248 4.10401 4.19366 4.31870 4.32114 4.43335 4.48947 4.54734 4.58997 4.64409 4.73357 4.86178 4.90018 4.95083 5.05833 5.27859 5.38322 5.61154 5.94680 6.14327 6.16875 6.42504 6.66941 7.19630 7.37578 8.81990 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.036989 B = 0.009390 C = 0.009045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.797072 B = 2981.313992 C = 3094.952391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.068 3.932 4 C 0.037 3.963 5 N -0.514 5.514 6 C 0.045 3.955 7 C -0.136 4.136 8 C 0.212 3.788 9 O -0.582 6.582 10 C -0.533 4.533 11 H 0.034 0.966 12 C 0.028 3.972 13 N -0.941 5.941 14 Si 0.935 3.065 15 H -0.288 1.288 16 H -0.301 1.301 17 H -0.209 1.209 18 C 0.052 3.948 19 H 0.086 0.914 20 H 0.055 0.945 21 H 0.047 0.953 22 H 0.077 0.923 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.376 0.624 31 H 0.265 0.735 32 H 0.052 0.948 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.013 12.343 5.667 17.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.009 4.009 4 C -0.091 4.091 5 N -0.240 5.240 6 C -0.082 4.082 7 C -0.174 4.174 8 C 0.172 3.828 9 O -0.389 6.389 10 C -0.571 4.571 11 H 0.052 0.948 12 C -0.171 4.171 13 N -0.581 5.581 14 Si 0.761 3.239 15 H -0.215 1.215 16 H -0.229 1.229 17 H -0.131 1.131 18 C -0.076 4.076 19 H 0.105 0.895 20 H 0.074 0.926 21 H 0.066 0.934 22 H 0.095 0.905 23 H 0.078 0.922 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.224 0.776 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.985 11.654 6.330 17.221 hybrid contribution 0.777 0.290 -0.176 0.848 sum -10.208 11.945 6.154 16.875 Atomic orbital electron populations 1.22882 0.80049 1.03326 1.00758 1.88025 1.20938 1.28515 1.95484 1.22647 0.91835 0.84879 1.01503 1.22472 0.95203 0.98437 0.92960 1.65319 1.05506 1.50634 1.02500 1.23036 0.98940 0.96088 0.90132 1.22873 0.96025 1.00569 0.97906 1.19655 0.84637 0.87703 0.90820 1.86443 1.55309 1.68028 1.29169 1.21627 1.07852 0.96545 1.31065 0.94799 1.25805 0.98518 0.95093 0.97647 1.70088 1.26660 1.16494 1.44844 0.86077 0.76328 0.83276 0.78216 1.21535 1.22883 1.13130 1.23083 0.89263 0.98316 0.96940 0.89545 0.92628 0.93437 0.90485 0.92206 0.90961 0.91553 0.92327 0.89899 0.89781 0.92789 0.77583 0.92644 0.93025 0.93849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.41 -12.28 10.65 -148.98 -1.59 -13.86 16 3 C 0.07 1.67 5.81 71.98 0.42 2.09 16 4 C 0.04 1.13 5.45 86.31 0.47 1.60 16 5 N -0.51 -20.07 5.43 -881.05 -4.79 -24.86 16 6 C 0.05 1.52 5.11 86.42 0.44 1.96 16 7 C -0.14 -5.26 6.43 31.49 0.20 -5.06 16 8 C 0.21 9.87 0.90 -10.64 -0.01 9.86 16 9 O -0.58 -25.39 10.16 -148.98 -1.51 -26.90 16 10 C -0.53 -30.94 8.82 25.60 0.23 -30.71 16 11 H 0.03 2.19 7.60 -2.91 -0.02 2.17 16 12 C 0.03 1.69 5.43 84.66 0.46 2.15 16 13 N -0.94 -60.43 13.96 21.45 0.30 -60.13 16 14 Si 0.93 46.95 24.05 68.60 1.65 48.60 16 15 H -0.29 -14.32 7.09 99.48 0.71 -13.61 16 16 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 17 H -0.21 -9.84 5.22 99.48 0.52 -9.32 16 18 C 0.05 2.29 4.16 86.45 0.36 2.65 16 19 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 20 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 21 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 22 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.06 1.33 6.57 -2.39 -0.02 1.31 16 24 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.07 1.71 7.88 -2.39 -0.02 1.70 16 26 H 0.06 1.65 8.00 -2.39 -0.02 1.63 16 27 H 0.08 2.58 7.57 -2.39 -0.02 2.56 16 28 H 0.08 2.77 7.98 -2.39 -0.02 2.75 16 29 H 0.05 2.28 7.42 -2.39 -0.02 2.26 16 30 H 0.38 14.19 9.08 -74.05 -0.67 13.52 16 31 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 32 H 0.05 2.56 4.85 -2.38 -0.01 2.55 16 33 H 0.04 1.77 7.76 -2.39 -0.02 1.75 16 Total: -1.00 -71.80 260.50 -1.89 -73.69 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.23 Total: 17.15 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 3.82 Total: -13.69 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -4.49 Total: -84.99 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -3.10 Total: -40.77 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.65 Total: 48.60 kcal Total: -71.80 -1.89 -73.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328522736.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.926 kcal (2) G-P(sol) polarization free energy of solvation -71.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds