Wall clock time and date at job start Mon Mar 30 2020 17:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47676 * 2 1 4 4 C 1.53001 * 109.47189 * 120.00553 * 2 1 3 5 5 H 1.09006 * 109.57961 * 60.27246 * 4 2 1 6 6 C 1.53758 * 109.51030 * 180.77795 * 4 2 1 7 7 N 1.46384 * 109.20289 * 177.55460 * 6 4 2 8 8 C 1.36940 * 119.64378 * 114.91689 * 7 6 4 9 9 H 1.07995 * 119.99797 * 328.22468 * 8 7 6 10 10 C 1.38814 * 119.99686 * 148.49983 * 8 7 6 11 11 N 1.31622 * 119.99526 * 158.87611 * 10 8 7 12 12 Si 1.86799 * 120.00318 * 338.87774 * 10 8 7 13 13 H 1.48492 * 109.47276 * 94.52258 * 12 10 8 14 14 H 1.48495 * 109.47009 * 214.52866 * 12 10 8 15 15 H 1.48500 * 109.46814 * 334.52280 * 12 10 8 16 16 C 1.46374 * 120.70692 * 294.63972 * 7 6 4 17 17 C 1.53237 * 109.48760 * 65.36227 * 16 7 6 18 18 S 1.81737 * 109.58232 * 299.99654 * 4 2 1 19 19 H 1.09006 * 109.47536 * 59.99354 * 1 2 3 20 20 H 1.08995 * 109.47650 * 179.97438 * 1 2 3 21 21 H 1.09011 * 109.47000 * 299.99731 * 1 2 3 22 22 H 1.09011 * 109.47000 * 240.00269 * 2 1 3 23 23 H 1.08999 * 109.47524 * 179.97438 * 3 2 1 24 24 H 1.08996 * 109.47056 * 300.00782 * 3 2 1 25 25 H 1.09012 * 109.46381 * 60.00528 * 3 2 1 26 26 H 1.08999 * 109.60668 * 57.64415 * 6 4 2 27 27 H 1.08995 * 109.61065 * 297.47626 * 6 4 2 28 28 H 0.97001 * 119.99668 * 180.02562 * 11 10 8 29 29 H 1.08997 * 109.46987 * 185.37058 * 16 7 6 30 30 H 1.09001 * 109.46818 * 305.35430 * 16 7 6 31 31 H 1.09005 * 109.58295 * 62.13853 * 17 16 7 32 32 H 1.09004 * 109.58255 * 182.41185 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 1 1.6816 -1.7508 1.2484 6 6 3.5774 -0.7049 1.2599 7 7 4.0572 -1.3449 2.4859 8 6 4.7667 -2.5135 2.4069 9 1 4.5616 -3.2170 1.6137 10 6 5.7453 -2.7963 3.3499 11 7 6.1320 -4.0393 3.5444 12 14 6.5135 -1.4129 4.3427 13 1 5.7955 -1.2732 5.6349 14 1 7.9424 -1.7235 4.6012 15 1 6.4132 -0.1422 3.5808 16 6 3.7919 -0.7459 3.7949 17 6 2.2844 -0.7635 4.0691 18 16 1.4359 0.1329 2.7352 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8933 -0.5138 -0.8901 23 1 3.1301 1.4424 0.0005 24 1 1.6767 1.9563 -0.8899 25 1 1.6767 1.9562 0.8902 26 1 3.9324 0.3251 1.2250 27 1 3.9552 -1.2489 0.3943 28 1 6.8157 -4.2370 4.2036 29 1 4.3083 -1.3164 4.5669 30 1 4.1507 0.2834 3.8028 31 1 1.9306 -1.7941 4.0994 32 1 2.0811 -0.2793 5.0243 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334310921.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:10:19 Heat of formation + Delta-G solvation = -6.049588 kcal Electronic energy + Delta-G solvation = -13266.971718 eV Core-core repulsion = 11160.286098 eV Total energy + Delta-G solvation = -2106.685620 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.95887 -36.97319 -34.01526 -31.77647 -30.03728 -28.01677 -25.91161 -24.70615 -22.37503 -21.10764 -18.98481 -17.50641 -16.94351 -16.43073 -16.14927 -15.51261 -14.96090 -14.68148 -14.55936 -14.17654 -13.99789 -13.45242 -13.09396 -12.91989 -12.66055 -12.50849 -12.43091 -11.97995 -11.91536 -11.74199 -11.56952 -11.42335 -10.86065 -10.44783 -9.14524 -8.44311 -8.24554 -5.62334 0.93014 1.25952 1.38477 1.48290 1.65952 2.35367 2.94231 3.20655 3.81600 3.94727 4.10473 4.15549 4.18175 4.34540 4.44485 4.58044 4.66902 4.75992 4.79677 4.88799 4.93761 5.05785 5.10353 5.14051 5.24845 5.47712 5.53682 5.81332 6.06117 6.84331 7.52391 7.89693 8.94534 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.045040 B = 0.010357 C = 0.009779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.518287 B = 2702.706969 C = 2862.712804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.073 4.073 3 C -0.146 4.146 4 C -0.055 4.055 5 H 0.064 0.936 6 C 0.150 3.850 7 N -0.621 5.621 8 C -0.263 4.263 9 H 0.048 0.952 10 C -0.025 4.025 11 N -0.950 5.950 12 Si 0.945 3.055 13 H -0.271 1.271 14 H -0.307 1.307 15 H -0.260 1.260 16 C 0.127 3.873 17 C -0.101 4.101 18 S -0.252 6.252 19 H 0.074 0.926 20 H 0.050 0.950 21 H 0.055 0.945 22 H 0.087 0.913 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.264 0.736 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.473 11.236 -4.098 15.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.093 4.093 3 C -0.204 4.204 4 C -0.186 4.186 5 H 0.083 0.917 6 C 0.023 3.977 7 N -0.345 5.345 8 C -0.393 4.393 9 H 0.066 0.934 10 C -0.221 4.221 11 N -0.594 5.594 12 Si 0.773 3.227 13 H -0.198 1.198 14 H -0.235 1.235 15 H -0.184 1.184 16 C 0.000 4.000 17 C -0.251 4.251 18 S -0.026 6.026 19 H 0.093 0.907 20 H 0.069 0.931 21 H 0.074 0.926 22 H 0.106 0.894 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.091 11.993 -3.937 16.160 hybrid contribution 1.536 -1.243 0.641 2.077 sum -8.555 10.750 -3.296 14.129 Atomic orbital electron populations 1.21824 0.93817 1.01880 1.02396 1.20971 0.96847 0.96851 0.94590 1.21914 1.01150 0.94857 1.02442 1.23913 0.99512 1.00301 0.94896 0.91720 1.21392 0.90745 0.97096 0.88456 1.44326 1.62882 1.25890 1.01369 1.18785 1.12894 0.94304 1.13272 0.93435 1.25994 0.97930 0.97948 1.00245 1.69975 1.33285 1.19375 1.36774 0.85891 0.76700 0.81070 0.79019 1.19762 1.23507 1.18393 1.21428 0.93548 0.97243 0.87781 1.23945 0.98872 1.02481 0.99846 1.85998 1.63288 1.50572 1.02697 0.90738 0.93068 0.92574 0.89439 0.92728 0.90888 0.92356 0.92560 0.91617 0.92677 0.92323 0.92999 0.91462 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.96 71.98 0.64 -2.51 16 2 C -0.07 -1.83 2.76 -10.80 -0.03 -1.86 16 3 C -0.15 -3.37 8.60 71.98 0.62 -2.75 16 4 C -0.06 -1.83 2.59 30.85 0.08 -1.75 16 5 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 6 C 0.15 5.77 5.31 86.66 0.46 6.23 16 7 N -0.62 -29.16 2.52 -700.69 -1.76 -30.92 16 8 C -0.26 -14.84 9.88 84.03 0.83 -14.01 16 9 H 0.05 2.95 8.06 -2.91 -0.02 2.93 16 10 C -0.03 -1.45 5.21 84.86 0.44 -1.01 16 11 N -0.95 -59.06 13.97 21.65 0.30 -58.75 16 12 Si 0.95 45.66 24.57 68.60 1.69 47.35 16 13 H -0.27 -12.29 6.66 99.48 0.66 -11.63 16 14 H -0.31 -15.02 7.11 99.48 0.71 -14.31 16 15 H -0.26 -12.05 6.96 99.48 0.69 -11.36 16 16 C 0.13 5.37 4.15 86.48 0.36 5.73 16 17 C -0.10 -3.64 6.66 72.06 0.48 -3.16 16 18 S -0.25 -8.19 18.74 -56.49 -1.06 -9.25 16 19 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 20 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.06 1.35 6.92 -2.38 -0.02 1.33 16 22 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 23 H 0.05 1.33 6.36 -2.39 -0.02 1.31 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.45 6.92 -2.38 -0.02 1.43 16 26 H 0.06 2.05 6.32 -2.39 -0.02 2.04 16 27 H 0.07 2.58 7.88 -2.39 -0.02 2.56 16 28 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 29 H 0.06 2.71 3.94 -2.39 -0.01 2.70 16 30 H 0.05 2.09 7.82 -2.39 -0.02 2.07 16 31 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 Total: -1.00 -62.53 254.17 4.07 -58.46 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 1.02 Total: 8.21 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 3.89 Total: -15.10 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -1.46 Total: -89.67 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.69 Total: 47.35 kcal Atomic # 16 Polarization: -8.19 SS G_CDS: -1.06 Total: -9.25 kcal Total: -62.53 4.07 -58.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334310921.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.413 kcal (2) G-P(sol) polarization free energy of solvation -62.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds