Wall clock time and date at job start Mon Mar 30 2020 17:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86796 * 119.99885 * 2 1 4 4 H 1.48510 * 109.46918 * 239.99811 * 3 2 1 5 5 H 1.48497 * 109.47531 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47039 * 120.00351 * 3 2 1 7 7 C 1.40042 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00021 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00353 * 359.97438 * 7 2 1 10 10 O 1.21683 * 119.99918 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99876 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99665 * 179.72458 * 11 9 7 13 13 H 1.08999 * 109.47228 * 325.27715 * 12 11 9 14 14 C 1.53001 * 109.47193 * 205.27836 * 12 11 9 15 15 C 1.53005 * 109.47258 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.46569 * 60.00270 * 15 14 12 17 17 C 1.53003 * 109.46811 * 299.99361 * 16 15 14 18 18 H 1.09002 * 109.46570 * 179.97438 * 17 16 15 19 19 F 1.39892 * 109.47622 * 300.00326 * 17 16 15 20 20 C 1.52997 * 109.46860 * 60.01012 * 17 16 15 21 21 H 0.97004 * 119.99544 * 0.02562 * 1 2 3 22 22 H 0.97001 * 120.00485 * 0.02562 * 11 9 7 23 23 H 1.08999 * 109.46935 * 300.00059 * 14 12 11 24 24 H 1.09004 * 109.47138 * 59.99988 * 14 12 11 25 25 H 1.09000 * 109.46569 * 179.97438 * 15 14 12 26 26 H 1.08999 * 109.47329 * 299.99981 * 15 14 12 27 27 H 1.08999 * 109.47531 * 59.99835 * 16 15 14 28 28 H 1.09005 * 109.46473 * 179.97438 * 16 15 14 29 29 H 1.09001 * 109.47132 * 179.97438 * 20 17 16 30 30 H 1.08999 * 109.47488 * 59.99523 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6963 -1.2126 5 1 1.2758 2.7465 -0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0069 -1.2128 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0016 12 6 1.2164 -4.9164 0.0045 13 1 0.3061 -4.8075 0.5942 14 6 2.0940 -6.0091 0.6183 15 6 1.3287 -7.3340 0.6253 16 6 0.9634 -7.7193 -0.8097 17 6 0.0857 -6.6266 -1.4234 18 1 -0.1742 -6.9009 -2.4458 19 9 -1.0824 -6.4865 -0.6663 20 6 0.8509 -5.3018 -1.4303 21 1 -0.4850 0.8401 -0.0004 22 1 2.9189 -3.6477 -0.0020 23 1 3.0042 -6.1179 0.0287 24 1 2.3540 -5.7347 1.6407 25 1 1.9542 -8.1124 1.0621 26 1 0.4187 -7.2248 1.2151 27 1 1.8734 -7.8284 -1.3996 28 1 0.4186 -8.6634 -0.8047 29 1 0.2259 -4.5234 -1.8679 30 1 1.7610 -5.4109 -2.0202 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335517911.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:10:24 Heat of formation + Delta-G solvation = -114.311715 kcal Electronic energy + Delta-G solvation = -14757.711996 eV Core-core repulsion = 12080.118602 eV Total energy + Delta-G solvation = -2677.593394 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.27083 -38.24119 -36.24146 -32.90013 -32.11627 -30.17865 -28.83081 -25.97248 -22.49163 -22.08949 -19.60982 -19.37852 -17.13812 -16.18745 -15.35115 -15.20260 -14.96463 -14.43662 -14.09306 -13.81004 -12.93558 -12.55826 -12.40310 -12.19871 -12.02624 -11.49774 -11.24975 -11.14900 -10.95802 -10.79438 -10.44678 -10.37357 -10.24521 -9.96299 -9.81244 -8.81898 -7.56416 -7.46189 -6.14792 -4.61089 3.17302 3.22074 3.24029 4.12226 4.60443 4.64030 4.75558 4.83830 5.01186 5.23687 5.40811 5.47695 5.58665 5.62939 5.72643 5.89651 5.96385 6.05922 6.14142 6.30975 6.33421 6.43879 6.79096 6.85517 7.46008 7.97500 8.15541 8.36561 9.05457 9.58871 10.64229 10.83422 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.060296 B = 0.007333 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.262622 B = 3817.224889 C = 4061.981633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.066 0.934 9 C 0.554 3.446 10 O -0.577 6.577 11 N -0.763 5.763 12 C 0.156 3.844 13 H 0.080 0.920 14 C -0.126 4.126 15 C -0.116 4.116 16 C -0.144 4.144 17 C 0.094 3.906 18 H 0.075 0.925 19 F -0.211 7.211 20 C -0.155 4.155 21 H 0.268 0.732 22 H 0.379 0.621 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.900 -11.772 -1.673 12.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.084 0.916 9 C 0.358 3.642 10 O -0.460 6.460 11 N -0.417 5.417 12 C 0.050 3.950 13 H 0.098 0.902 14 C -0.164 4.164 15 C -0.154 4.154 16 C -0.182 4.182 17 C 0.058 3.942 18 H 0.093 0.907 19 F -0.192 7.192 20 C -0.194 4.194 21 H 0.079 0.921 22 H 0.210 0.790 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.777 -11.636 -1.646 12.344 hybrid contribution 0.914 0.807 -0.061 1.221 sum 4.691 -10.829 -1.706 11.924 Atomic orbital electron populations 1.70019 1.07025 1.27301 1.35337 1.25702 0.94607 1.00235 0.92677 0.86449 0.79814 0.81154 0.79384 1.19345 1.20574 1.19319 1.20863 0.93510 0.89511 1.54581 0.91565 1.18221 0.87265 0.82474 0.76251 1.90610 1.14021 1.86755 1.54594 1.46193 1.08353 1.04739 1.82411 1.20403 0.96197 0.84433 0.94000 0.90169 1.21836 0.98553 0.94592 1.01426 1.21450 1.00822 0.97000 0.96159 1.22135 1.00195 0.98045 0.97777 1.21535 0.82121 0.96806 0.93779 0.90662 1.92802 1.50732 1.97041 1.78639 1.22567 1.00563 0.96008 1.00268 0.92087 0.79010 0.92014 0.91464 0.91754 0.91248 0.90412 0.91293 0.90146 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.41 11.83 55.55 0.66 -22.76 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 3 Si 0.91 20.36 29.56 -169.99 -5.02 15.33 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.55 -15.65 9.54 -35.63 -0.34 -15.99 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.55 15.96 7.71 -12.99 -0.10 15.86 16 10 O -0.58 -19.01 14.68 5.20 0.08 -18.94 16 11 N -0.76 -17.21 5.07 -55.22 -0.28 -17.49 16 12 C 0.16 3.06 2.33 -67.93 -0.16 2.90 16 13 H 0.08 1.88 7.23 -51.93 -0.38 1.50 16 14 C -0.13 -1.85 5.39 -26.73 -0.14 -1.99 16 15 C -0.12 -1.47 5.80 -26.73 -0.16 -1.63 16 16 C -0.14 -1.69 5.72 -26.73 -0.15 -1.84 16 17 C 0.09 1.40 4.12 -26.73 -0.11 1.29 16 18 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 19 F -0.21 -3.85 16.04 2.25 0.04 -3.81 16 20 C -0.15 -2.75 5.29 -26.73 -0.14 -2.89 16 21 H 0.27 7.44 8.29 -40.82 -0.34 7.10 16 22 H 0.38 7.46 8.58 -40.82 -0.35 7.11 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.97 7.80 -51.93 -0.41 0.57 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 254.81 15.07 3.84 3.84 Total: -1.00 -34.28 254.81 -6.15 -40.43 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -4.06 Total: 5.31 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.40 Total: -1.91 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.38 Total: -40.24 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.08 Total: -18.94 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.04 Total: -3.81 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -34.28 -6.15 -40.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335517911.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.880 kcal (2) G-P(sol) polarization free energy of solvation -34.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds