Wall clock time and date at job start Mon Mar 30 2020 17:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86796 * 119.99885 * 2 1 4 4 H 1.48510 * 109.46918 * 239.99811 * 3 2 1 5 5 H 1.48497 * 109.47531 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47039 * 120.00351 * 3 2 1 7 7 C 1.40042 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00021 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00353 * 359.97438 * 7 2 1 10 10 O 1.21683 * 119.99918 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99876 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99665 * 179.72458 * 11 9 7 13 13 H 1.08999 * 109.47228 * 325.27715 * 12 11 9 14 14 C 1.53001 * 109.47193 * 205.27836 * 12 11 9 15 15 C 1.53005 * 109.47258 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.46569 * 60.00270 * 15 14 12 17 17 C 1.53003 * 109.46811 * 299.99361 * 16 15 14 18 18 H 1.09002 * 109.46570 * 179.97438 * 17 16 15 19 19 F 1.39892 * 109.47622 * 300.00326 * 17 16 15 20 20 C 1.52997 * 109.46860 * 60.01012 * 17 16 15 21 21 H 0.97004 * 119.99544 * 0.02562 * 1 2 3 22 22 H 0.97001 * 120.00485 * 0.02562 * 11 9 7 23 23 H 1.08999 * 109.46935 * 300.00059 * 14 12 11 24 24 H 1.09004 * 109.47138 * 59.99988 * 14 12 11 25 25 H 1.09000 * 109.46569 * 179.97438 * 15 14 12 26 26 H 1.08999 * 109.47329 * 299.99981 * 15 14 12 27 27 H 1.08999 * 109.47531 * 59.99835 * 16 15 14 28 28 H 1.09005 * 109.46473 * 179.97438 * 16 15 14 29 29 H 1.09001 * 109.47132 * 179.97438 * 20 17 16 30 30 H 1.08999 * 109.47488 * 59.99523 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6963 -1.2126 5 1 1.2758 2.7465 -0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0069 -1.2128 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0016 12 6 1.2164 -4.9164 0.0045 13 1 0.3061 -4.8075 0.5942 14 6 2.0940 -6.0091 0.6183 15 6 1.3287 -7.3340 0.6253 16 6 0.9634 -7.7193 -0.8097 17 6 0.0857 -6.6266 -1.4234 18 1 -0.1742 -6.9009 -2.4458 19 9 -1.0824 -6.4865 -0.6663 20 6 0.8509 -5.3018 -1.4303 21 1 -0.4850 0.8401 -0.0004 22 1 2.9189 -3.6477 -0.0020 23 1 3.0042 -6.1179 0.0287 24 1 2.3540 -5.7347 1.6407 25 1 1.9542 -8.1124 1.0621 26 1 0.4187 -7.2248 1.2151 27 1 1.8734 -7.8284 -1.3996 28 1 0.4186 -8.6634 -0.8047 29 1 0.2259 -4.5234 -1.8679 30 1 1.7610 -5.4109 -2.0202 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335517911.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:10:24 Heat of formation + Delta-G solvation = -139.415770 kcal Electronic energy + Delta-G solvation = -14758.800590 eV Core-core repulsion = 12080.118602 eV Total energy + Delta-G solvation = -2678.681987 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.61042 -39.96166 -38.00833 -34.83118 -34.14878 -31.42898 -30.42377 -28.02961 -23.80798 -23.49946 -21.48738 -20.79381 -19.11884 -17.58267 -17.45459 -16.54445 -16.32667 -15.90127 -15.70880 -15.50223 -14.53080 -14.42408 -14.00227 -13.62683 -13.23717 -13.13898 -12.96258 -12.69330 -12.61855 -12.49020 -12.07497 -11.95485 -11.65655 -11.30653 -11.09661 -10.91904 -9.83699 -9.44596 -8.28771 -6.86579 1.38941 1.43073 1.54832 2.24198 2.47389 3.05318 3.55385 3.66404 3.71857 3.85308 4.00817 4.14336 4.27083 4.43208 4.46812 4.51050 4.71851 4.95910 5.06935 5.11011 5.12895 5.21186 5.30730 5.42032 5.46926 5.88663 6.25982 6.31180 6.86038 7.58679 8.51188 8.68491 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.060296 B = 0.007333 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.262622 B = 3817.224889 C = 4061.981633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.026 3.974 3 Si 1.000 3.000 4 H -0.253 1.253 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.576 4.576 8 H 0.089 0.911 9 C 0.536 3.464 10 O -0.633 6.633 11 N -0.751 5.751 12 C 0.151 3.849 13 H 0.027 0.973 14 C -0.115 4.115 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.086 3.914 18 H 0.103 0.897 19 F -0.237 7.237 20 C -0.150 4.150 21 H 0.274 0.726 22 H 0.396 0.604 23 H 0.092 0.908 24 H 0.063 0.937 25 H 0.101 0.899 26 H 0.045 0.955 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.027 0.973 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.697 -12.828 -2.135 15.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.189 4.189 3 Si 0.819 3.181 4 H -0.177 1.177 5 H -0.200 1.200 6 H -0.177 1.177 7 C -0.613 4.613 8 H 0.107 0.893 9 C 0.340 3.660 10 O -0.520 6.520 11 N -0.404 5.404 12 C 0.045 3.955 13 H 0.046 0.954 14 C -0.153 4.153 15 C -0.153 4.153 16 C -0.172 4.172 17 C 0.049 3.951 18 H 0.121 0.879 19 F -0.218 7.218 20 C -0.189 4.189 21 H 0.084 0.916 22 H 0.230 0.770 23 H 0.111 0.889 24 H 0.082 0.918 25 H 0.119 0.881 26 H 0.064 0.936 27 H 0.127 0.873 28 H 0.110 0.890 29 H 0.046 0.954 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.625 -12.753 -2.108 14.524 hybrid contribution 0.028 1.079 0.080 1.082 sum 6.652 -11.674 -2.027 13.588 Atomic orbital electron populations 1.70211 1.09670 1.28952 1.36615 1.27035 0.95522 1.05145 0.91184 0.85042 0.78144 0.74531 0.80360 1.17664 1.20020 1.17724 1.21447 0.94792 0.90146 1.54890 0.89263 1.18646 0.86852 0.84541 0.75918 1.90564 1.16413 1.87963 1.57077 1.45864 1.09144 1.04540 1.80855 1.20583 0.95125 0.84709 0.95086 0.95436 1.21780 0.98739 0.93590 1.01178 1.21484 1.00201 0.96596 0.97044 1.22147 1.00878 0.97196 0.96956 1.21889 0.81520 0.96160 0.95517 0.87884 1.92757 1.52426 1.97160 1.79461 1.22480 1.01295 0.96399 0.98739 0.91647 0.77046 0.88937 0.91802 0.88090 0.93572 0.87298 0.89043 0.95393 0.88020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.20 11.83 21.83 0.26 -51.94 16 2 C 0.03 1.48 5.50 85.30 0.47 1.95 16 3 Si 1.00 41.67 29.56 68.60 2.03 43.70 16 4 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 7 C -0.58 -33.42 9.54 24.83 0.24 -33.18 16 8 H 0.09 4.58 7.85 -2.91 -0.02 4.55 16 9 C 0.54 32.20 7.71 86.36 0.67 32.86 16 10 O -0.63 -44.43 14.68 -4.29 -0.06 -44.49 16 11 N -0.75 -34.51 5.07 -446.83 -2.27 -36.78 16 12 C 0.15 6.03 2.33 44.99 0.10 6.14 16 13 H 0.03 1.38 7.23 -2.39 -0.02 1.37 16 14 C -0.11 -3.13 5.39 30.60 0.16 -2.97 16 15 C -0.12 -2.58 5.80 30.60 0.18 -2.41 16 16 C -0.13 -2.64 5.72 30.60 0.17 -2.47 16 17 C 0.09 2.44 4.12 30.59 0.13 2.56 16 18 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 19 F -0.24 -8.89 16.04 44.97 0.72 -8.17 16 20 C -0.15 -5.36 5.29 30.59 0.16 -5.20 16 21 H 0.27 15.71 8.29 -92.71 -0.77 14.94 16 22 H 0.40 15.28 8.58 -92.71 -0.80 14.49 16 23 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 25 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.05 1.25 7.80 -2.39 -0.02 1.23 16 27 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -80.94 254.81 3.30 -77.64 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.34 Total: 22.75 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 2.28 Total: -2.71 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -2.01 Total: -88.72 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -0.06 Total: -44.49 kcal Atomic # 9 Polarization: -8.89 SS G_CDS: 0.72 Total: -8.17 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -80.94 3.30 -77.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335517911.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.777 kcal (2) G-P(sol) polarization free energy of solvation -80.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds