Wall clock time and date at job start Mon Mar 30 2020 17:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86805 * 119.99643 * 2 1 4 4 H 1.48500 * 109.47185 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.46787 * 240.00035 * 3 2 1 6 6 H 1.48502 * 109.46779 * 120.00052 * 3 2 1 7 7 C 1.40045 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00222 * 4.67054 * 7 2 1 9 9 C 1.46373 * 119.99626 * 184.67774 * 7 2 1 10 10 O 1.21687 * 120.00293 * 6.23890 * 9 7 2 11 11 N 1.34780 * 119.99746 * 186.24684 * 9 7 2 12 12 C 1.46505 * 119.99680 * 179.97438 * 11 9 7 13 13 H 1.08995 * 109.47237 * 35.00285 * 12 11 9 14 14 C 1.53003 * 109.46742 * 155.00112 * 12 11 9 15 15 C 1.53001 * 109.46772 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.46918 * 299.99487 * 15 14 12 17 17 C 1.53003 * 109.46980 * 60.00641 * 16 15 14 18 18 H 1.08995 * 109.47113 * 59.99486 * 17 16 15 19 19 F 1.39899 * 109.47014 * 179.97438 * 17 16 15 20 20 C 1.52998 * 109.47043 * 274.99657 * 12 11 9 21 21 H 0.97000 * 120.00092 * 174.90100 * 1 2 3 22 22 H 0.97002 * 119.99928 * 359.97438 * 11 9 7 23 23 H 1.09005 * 109.47089 * 299.99688 * 14 12 11 24 24 H 1.08991 * 109.47321 * 59.99621 * 14 12 11 25 25 H 1.08995 * 109.47332 * 60.00097 * 15 14 12 26 26 H 1.09007 * 109.46805 * 179.97438 * 15 14 12 27 27 H 1.09003 * 109.46946 * 180.02562 * 16 15 14 28 28 H 1.09000 * 109.47474 * 299.99999 * 16 15 14 29 29 H 1.08995 * 109.47617 * 300.00395 * 20 12 11 30 30 H 1.08997 * 109.47141 * 60.00465 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 1.2756 2.7465 -0.0006 5 1 3.0944 1.6965 -1.2125 6 1 3.0944 1.6965 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 1.4697 -2.1466 -0.0752 9 6 3.4671 -1.2148 0.1039 10 8 4.0644 -0.1736 0.3033 11 7 4.1499 -2.3700 -0.0219 12 6 5.6114 -2.3719 0.0811 13 1 5.9250 -1.6275 0.8129 14 6 6.0895 -3.7560 0.5243 15 6 7.6157 -3.7578 0.6324 16 6 8.2239 -3.4204 -0.7304 17 6 7.7457 -2.0363 -1.1736 18 1 8.0590 -1.2920 -0.4416 19 9 8.3022 -1.7276 -2.4195 20 6 6.2190 -2.0348 -1.2820 21 1 -0.4850 -0.8367 -0.0747 22 1 3.6738 -3.2001 -0.1805 23 1 5.6566 -3.9962 1.4954 24 1 5.7758 -4.5004 -0.2074 25 1 7.9290 -3.0135 1.3645 26 1 7.9564 -4.7438 0.9487 27 1 9.3112 -3.4222 -0.6535 28 1 7.9106 -4.1648 -1.4624 29 1 5.9054 -2.7791 -2.0138 30 1 5.8784 -1.0487 -1.5978 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335517915.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:10:29 Heat of formation + Delta-G solvation = -154.432732 kcal Electronic energy + Delta-G solvation = -14698.101970 eV Core-core repulsion = 12018.768799 eV Total energy + Delta-G solvation = -2679.333172 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.66085 -40.43679 -38.49236 -35.15327 -34.62939 -31.32143 -30.47139 -27.96568 -23.83145 -23.36907 -21.60174 -21.23950 -20.01717 -17.72751 -17.30028 -16.86277 -16.25684 -16.09624 -15.74183 -15.61233 -14.98593 -14.69333 -14.50991 -14.16865 -13.76998 -13.41872 -13.03504 -12.54043 -12.40091 -12.15885 -12.06269 -11.69920 -11.56143 -11.36547 -11.22423 -11.16505 -10.10278 -9.78359 -9.21621 -7.16219 1.41406 1.52628 1.94722 2.18761 2.38080 2.80039 3.25268 3.50413 3.65322 3.73865 3.87997 4.05578 4.19158 4.36246 4.37476 4.52257 4.60869 4.91258 4.99761 5.05240 5.13291 5.17463 5.28259 5.36763 5.47821 5.52648 5.87557 6.03208 6.62129 7.15107 7.98930 8.09708 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.044827 B = 0.008306 C = 0.007514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.473066 B = 3370.128488 C = 3725.319363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.028 3.972 3 Si 1.162 2.838 4 H -0.307 1.307 5 H -0.298 1.298 6 H -0.294 1.294 7 C -0.618 4.618 8 H 0.067 0.933 9 C 0.550 3.450 10 O -0.641 6.641 11 N -0.739 5.739 12 C 0.152 3.848 13 H 0.060 0.940 14 C -0.120 4.120 15 C -0.106 4.106 16 C -0.135 4.135 17 C 0.091 3.909 18 H 0.086 0.914 19 F -0.229 7.229 20 C -0.151 4.151 21 H 0.278 0.722 22 H 0.400 0.600 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.655 -9.747 0.050 17.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.186 4.186 3 Si 0.993 3.007 4 H -0.238 1.238 5 H -0.226 1.226 6 H -0.222 1.222 7 C -0.655 4.655 8 H 0.085 0.915 9 C 0.356 3.644 10 O -0.537 6.537 11 N -0.388 5.388 12 C 0.047 3.953 13 H 0.078 0.922 14 C -0.158 4.158 15 C -0.144 4.144 16 C -0.173 4.173 17 C 0.055 3.945 18 H 0.104 0.896 19 F -0.210 7.210 20 C -0.191 4.191 21 H 0.088 0.912 22 H 0.234 0.766 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.120 0.880 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.821 -7.538 0.221 16.629 hybrid contribution -0.617 -1.960 -0.422 2.097 sum 14.204 -9.498 -0.201 17.088 Atomic orbital electron populations 1.70660 1.07788 1.32161 1.37084 1.27786 0.95728 1.06782 0.88296 0.81940 0.70694 0.69971 0.78049 1.23759 1.22622 1.22187 1.22258 0.91435 0.96136 1.55670 0.91470 1.18334 0.88407 0.82563 0.75079 1.90120 1.71103 1.32570 1.59859 1.45592 1.06219 1.09725 1.77245 1.20726 0.80347 0.99102 0.95140 0.92153 1.21836 0.97341 0.94155 1.02506 1.21419 0.92918 1.03949 0.96093 1.22114 1.02261 0.94161 0.98766 1.21706 0.91795 0.99968 0.81058 0.89583 1.92764 1.86944 1.94846 1.46460 1.22491 0.95156 1.01826 0.99588 0.91151 0.76586 0.90647 0.90129 0.91133 0.88002 0.88886 0.90165 0.90545 0.94288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.43 13.64 21.84 0.30 -49.13 16 2 C 0.03 1.66 5.52 85.30 0.47 2.13 16 3 Si 1.16 61.73 25.99 68.60 1.78 63.51 16 4 H -0.31 -15.32 7.11 99.48 0.71 -14.61 16 5 H -0.30 -16.02 7.11 99.48 0.71 -15.31 16 6 H -0.29 -16.13 6.78 99.48 0.67 -15.45 16 7 C -0.62 -35.14 9.96 24.83 0.25 -34.89 16 8 H 0.07 3.75 8.05 -2.91 -0.02 3.73 16 9 C 0.55 29.05 7.53 86.36 0.65 29.70 16 10 O -0.64 -36.89 11.73 -4.31 -0.05 -36.94 16 11 N -0.74 -29.95 5.07 -446.82 -2.27 -32.22 16 12 C 0.15 5.01 2.45 44.99 0.11 5.12 16 13 H 0.06 2.27 7.58 -2.39 -0.02 2.25 16 14 C -0.12 -2.65 5.39 30.60 0.16 -2.49 16 15 C -0.11 -1.74 5.92 30.59 0.18 -1.56 16 16 C -0.14 -2.45 5.66 30.59 0.17 -2.27 16 17 C 0.09 2.39 3.88 30.61 0.12 2.50 16 18 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 19 F -0.23 -6.88 17.08 44.97 0.77 -6.11 16 20 C -0.15 -4.92 5.23 30.61 0.16 -4.76 16 21 H 0.28 15.58 8.72 -92.71 -0.81 14.77 16 22 H 0.40 14.20 8.58 -92.71 -0.80 13.40 16 23 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 24 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -67.51 252.28 3.08 -64.43 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: 0.27 Total: 2.96 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 2.28 Total: -6.51 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -1.97 Total: -81.34 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -0.05 Total: -36.94 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.77 Total: -6.11 kcal Atomic # 14 Polarization: 61.73 SS G_CDS: 1.78 Total: 63.51 kcal Total: -67.51 3.08 -64.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335517915.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.998 kcal (2) G-P(sol) polarization free energy of solvation -67.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds