Wall clock time and date at job start Mon Mar 30 2020 17:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46896 * 110.99919 * 2 1 4 4 C 1.53001 * 109.47230 * 293.95264 * 3 2 1 5 5 C 1.50697 * 109.46995 * 180.02562 * 4 3 2 6 6 H 1.07991 * 120.00449 * 359.72153 * 5 4 3 7 7 C 1.37885 * 119.99686 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 4 10 10 H 1.48498 * 109.47416 * 59.99812 * 9 7 5 11 11 H 1.48508 * 109.46609 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46903 * 299.99397 * 9 7 5 13 13 C 1.46900 * 110.99972 * 123.95022 * 2 1 3 14 14 H 1.09001 * 110.45872 * 293.44344 * 13 2 1 15 15 C 1.54475 * 110.51360 * 170.68724 * 13 2 1 16 16 O 1.44425 * 104.80551 * 217.37863 * 15 13 2 17 17 C 1.44417 * 105.27514 * 40.51467 * 16 15 13 18 18 C 1.54477 * 104.80443 * 319.48575 * 17 16 15 19 19 H 1.09001 * 110.63238 * 142.67988 * 18 17 16 20 20 O 1.42906 * 110.51421 * 265.33955 * 18 17 16 21 21 H 1.08996 * 109.46926 * 60.00003 * 1 2 3 22 22 H 1.08998 * 109.47045 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47220 * 300.00415 * 1 2 3 24 24 H 1.08998 * 109.47372 * 173.95115 * 3 2 1 25 25 H 1.09006 * 109.47513 * 53.95286 * 3 2 1 26 26 H 1.08998 * 109.47065 * 59.99662 * 4 3 2 27 27 H 1.09001 * 109.46892 * 299.99926 * 4 3 2 28 28 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 29 29 H 1.08998 * 110.37241 * 336.21190 * 15 13 2 30 30 H 1.09005 * 110.37010 * 98.54530 * 15 13 2 31 31 H 1.09004 * 110.37051 * 200.65899 * 17 16 15 32 32 H 1.08998 * 110.37886 * 78.31773 * 17 16 15 33 33 H 0.96704 * 113.99378 * 294.63881 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1721 3.4641 -1.3185 6 1 2.7165 3.8335 -0.4621 7 6 1.9671 4.2812 -2.4100 8 7 1.3045 3.8312 -3.4532 9 14 2.6305 6.0274 -2.4072 10 1 4.1074 5.9956 -2.2551 11 1 2.2783 6.6928 -3.6873 12 1 2.0326 6.7822 -1.2767 13 6 1.9955 -0.7659 1.1376 14 1 1.7527 -0.2686 2.0767 15 6 3.5224 -0.9566 1.0017 16 8 3.7733 -2.2899 1.4968 17 6 2.6895 -3.0959 0.9855 18 6 1.4349 -2.2058 1.1267 19 1 0.7653 -2.3485 0.2786 20 8 0.7560 -2.4880 2.3522 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 3.0797 1.3444 0.1083 25 1 1.5611 1.9274 0.8309 26 1 0.5472 2.0844 -1.4266 27 1 2.0659 1.5015 -2.1492 28 1 1.1607 4.4059 -4.2212 29 1 3.8232 -0.8769 -0.0429 30 1 4.0520 -0.2210 1.6071 31 1 2.5793 -4.0038 1.5785 32 1 2.8625 -3.3443 -0.0616 33 1 0.3840 -3.3794 2.3993 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378721252.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:11:04 Heat of formation + Delta-G solvation = -115.609964 kcal Electronic energy + Delta-G solvation = -14913.621298 eV Core-core repulsion = 12359.431913 eV Total energy + Delta-G solvation = -2554.189385 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.02310 -38.01994 -37.06951 -35.14867 -32.19907 -30.32377 -29.76198 -27.39448 -25.40128 -23.90653 -22.09496 -21.15768 -18.84340 -18.27255 -17.53467 -17.31098 -16.59006 -16.50900 -15.48065 -15.41958 -15.09289 -14.39104 -14.19862 -13.93995 -13.92203 -13.34271 -13.07695 -12.85532 -12.62766 -12.49922 -12.34956 -12.05765 -11.70715 -11.33346 -11.28280 -11.14463 -10.62290 -10.53320 -9.36218 -8.20023 -6.31105 1.41002 1.43802 1.51709 2.39283 2.65434 2.98307 3.13666 3.31458 3.60421 3.76263 3.97571 4.17890 4.25488 4.40268 4.44812 4.60426 4.61804 4.69840 4.73826 4.78486 4.83681 4.98519 5.07696 5.43980 5.58463 5.64969 5.77325 6.01111 6.15719 6.28241 6.84618 6.85577 7.37878 8.91834 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.054371 B = 0.006258 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.853317 B = 4473.119264 C = 4712.270288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.537 5.537 3 C 0.076 3.924 4 C 0.038 3.962 5 C -0.547 4.547 6 H 0.059 0.941 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.965 3.035 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.051 3.949 14 H 0.049 0.951 15 C 0.057 3.943 16 O -0.389 6.389 17 C 0.018 3.982 18 C 0.079 3.921 19 H 0.093 0.907 20 O -0.574 6.574 21 H 0.059 0.941 22 H 0.088 0.912 23 H 0.020 0.980 24 H 0.069 0.931 25 H 0.019 0.981 26 H -0.003 1.003 27 H -0.003 1.003 28 H 0.264 0.736 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.047 -13.014 8.557 15.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.262 5.262 3 C -0.051 4.051 4 C 0.000 4.000 5 C -0.585 4.585 6 H 0.077 0.923 7 C -0.195 4.195 8 N -0.570 5.570 9 Si 0.789 3.211 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.193 1.193 13 C -0.058 4.058 14 H 0.066 0.934 15 C -0.020 4.020 16 O -0.308 6.308 17 C -0.058 4.058 18 C 0.019 3.981 19 H 0.111 0.889 20 O -0.383 6.383 21 H 0.078 0.922 22 H 0.106 0.894 23 H 0.039 0.961 24 H 0.087 0.913 25 H 0.037 0.963 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.137 0.863 32 H 0.098 0.902 33 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 0.405 -12.681 8.240 15.129 hybrid contribution -0.481 0.988 0.137 1.107 sum -0.075 -11.693 8.378 14.385 Atomic orbital electron populations 1.22425 0.86902 1.02393 1.00386 1.62160 1.08701 1.14606 1.40749 1.22063 0.99108 0.86116 0.97806 1.18907 0.95220 0.93626 0.92223 1.21593 1.35662 0.99015 1.02275 0.92250 1.25928 0.95357 1.03152 0.95029 1.70093 1.42009 1.38296 1.06624 0.85509 0.79131 0.78950 0.77500 1.19116 1.20772 1.19324 1.22948 0.95727 0.94334 0.92792 0.93351 1.23430 0.93323 0.84919 1.00341 1.89091 1.47722 1.19880 1.74072 1.24305 0.85320 0.95304 1.00908 1.23132 0.94153 0.93001 0.87788 0.88928 1.86512 1.74905 1.39141 1.37699 0.92207 0.89382 0.96149 0.91278 0.96296 0.98507 0.98475 0.92719 0.91115 0.88507 0.86258 0.90222 0.74884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 9.02 127.69 1.15 2.04 16 2 N -0.54 -19.24 4.57 -891.06 -4.07 -23.31 16 3 C 0.08 3.24 4.79 86.30 0.41 3.65 16 4 C 0.04 2.00 4.90 29.85 0.15 2.14 16 5 C -0.55 -31.18 9.11 25.60 0.23 -30.95 16 6 H 0.06 3.24 7.74 -2.92 -0.02 3.21 16 7 C 0.00 0.20 5.46 84.66 0.46 0.67 16 8 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 9 Si 0.96 44.18 29.54 68.60 2.03 46.20 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 C 0.05 1.57 2.64 45.93 0.12 1.69 16 14 H 0.05 1.63 8.00 -2.39 -0.02 1.61 16 15 C 0.06 1.69 6.05 72.48 0.44 2.13 16 16 O -0.39 -11.10 11.65 -148.98 -1.74 -12.83 16 17 C 0.02 0.39 7.38 72.48 0.53 0.93 16 18 C 0.08 1.86 3.59 31.61 0.11 1.97 16 19 H 0.09 2.03 6.19 -2.39 -0.01 2.02 16 20 O -0.57 -12.53 13.30 -148.98 -1.98 -14.51 16 21 H 0.06 2.25 6.47 -2.39 -0.02 2.23 16 22 H 0.09 2.37 6.01 -2.39 -0.01 2.35 16 23 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.07 2.82 7.03 -2.39 -0.02 2.80 16 25 H 0.02 0.81 8.12 -2.38 -0.02 0.79 16 26 H 0.00 -0.19 6.55 -2.39 -0.02 -0.21 16 27 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 28 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 29 H 0.07 2.20 8.05 -2.39 -0.02 2.18 16 30 H 0.10 2.73 8.14 -2.38 -0.02 2.71 16 31 H 0.12 1.84 8.09 -2.38 -0.02 1.82 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.40 4.30 9.12 -74.05 -0.68 3.62 16 Total: -1.00 -67.60 268.86 -1.44 -69.04 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.42 Total: 7.41 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 3.61 Total: -15.74 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -3.79 Total: -79.58 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -3.72 Total: -27.34 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -67.60 -1.44 -69.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378721252.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.567 kcal (2) G-P(sol) polarization free energy of solvation -67.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds