Wall clock time and date at job start Mon Mar 30 2020 17:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.47015 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99854 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46612 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47445 * 64.99870 * 12 11 10 14 14 C 1.47840 * 110.99868 * 290.84104 * 13 12 11 15 15 C 1.54906 * 104.79510 * 213.63472 * 14 13 12 16 16 C 1.55140 * 101.65583 * 37.07019 * 15 14 13 17 17 H 1.09002 * 110.70158 * 82.72684 * 16 15 14 18 18 O 1.42894 * 110.70857 * 205.96407 * 16 15 14 19 19 C 1.47436 * 111.00111 * 169.99704 * 13 12 11 20 20 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 22 22 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 23 23 H 1.08999 * 109.47060 * 299.99513 * 11 10 9 24 24 H 1.09000 * 109.47460 * 60.00053 * 11 10 9 25 25 H 1.09007 * 109.46768 * 185.00050 * 12 11 10 26 26 H 1.09003 * 109.47269 * 304.99460 * 12 11 10 27 27 H 1.08993 * 110.37744 * 332.46842 * 14 13 12 28 28 H 1.09006 * 110.37485 * 94.80799 * 14 13 12 29 29 H 1.09001 * 110.99431 * 278.97871 * 15 14 13 30 30 H 1.08997 * 111.02272 * 155.17871 * 15 14 13 31 31 H 0.96702 * 114.00041 * 293.60090 * 18 16 15 32 32 H 1.09002 * 109.89337 * 242.66096 * 19 13 12 33 33 H 1.08998 * 109.89164 * 3.85561 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 2.1798 -3.5853 0.0015 11 6 1.5652 -4.8754 0.0019 12 6 2.6482 -5.9561 0.0023 13 7 3.4084 -5.8873 1.2574 14 6 4.2294 -4.6591 1.3128 15 6 5.5036 -5.0699 2.0920 16 6 5.7337 -6.5151 1.5769 17 1 6.2613 -6.5047 0.6231 18 8 6.4486 -7.2880 2.5430 19 6 4.2984 -7.0539 1.4007 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6248 -2.5563 0.8920 22 1 0.6242 -2.5575 -0.8880 23 1 0.9455 -4.9823 0.8922 24 1 0.9446 -4.9826 -0.8877 25 1 2.1822 -6.9375 -0.0869 26 1 3.3217 -5.7959 -0.8397 27 1 4.4893 -4.3306 0.3066 28 1 3.6971 -3.8704 1.8447 29 1 5.3233 -5.0627 3.1670 30 1 6.3441 -4.4253 1.8349 31 1 7.3567 -6.9904 2.6910 32 1 4.0104 -7.6347 2.2770 33 1 4.2427 -7.6749 0.5067 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378806450.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:11:07 Heat of formation + Delta-G solvation = -99.807225 kcal Electronic energy + Delta-G solvation = -14746.725173 eV Core-core repulsion = 12193.221047 eV Total energy + Delta-G solvation = -2553.504127 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.24343 -37.00856 -35.71480 -33.05253 -31.49731 -28.75450 -27.47758 -26.12594 -22.61212 -22.14726 -21.10396 -20.42988 -17.71114 -16.96438 -16.13628 -15.73404 -14.90142 -14.45170 -13.96730 -13.81802 -13.72820 -13.44325 -13.02137 -12.53798 -12.01160 -11.72689 -11.57398 -11.25978 -11.13310 -10.98858 -10.74319 -10.69563 -10.14659 -10.10911 -9.92896 -8.83652 -8.63395 -8.23731 -8.12299 -6.46774 -4.15448 3.41107 3.45428 3.61696 3.92154 4.21865 4.43085 4.66330 4.75570 4.87387 5.00897 5.31241 5.34090 5.45726 5.58293 5.65119 5.70543 5.88703 5.96554 5.97359 6.05939 6.21219 6.33971 6.58617 6.78716 7.14205 7.17062 7.25043 7.49079 7.88990 8.18112 8.63054 8.80752 9.55333 10.93520 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.041490 B = 0.006515 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.701306 B = 4296.876185 C = 4858.112252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 1.081 2.919 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.595 4.595 8 H 0.059 0.941 9 C 0.186 3.814 10 O -0.385 6.385 11 C 0.062 3.938 12 C 0.055 3.945 13 N -0.523 5.523 14 C 0.059 3.941 15 C -0.166 4.166 16 C 0.081 3.919 17 H 0.061 0.939 18 O -0.563 6.563 19 C 0.049 3.951 20 H 0.267 0.733 21 H -0.005 1.005 22 H -0.007 1.007 23 H 0.047 0.953 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.377 0.623 32 H 0.085 0.915 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.936 -12.058 1.697 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.187 4.187 3 Si 0.908 3.092 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.633 4.633 8 H 0.078 0.922 9 C 0.112 3.888 10 O -0.304 6.304 11 C -0.015 4.015 12 C -0.073 4.073 13 N -0.248 5.248 14 C -0.068 4.068 15 C -0.204 4.204 16 C 0.021 3.979 17 H 0.079 0.921 18 O -0.367 6.367 19 C -0.079 4.079 20 H 0.078 0.922 21 H 0.013 0.987 22 H 0.010 0.990 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.224 0.776 32 H 0.103 0.897 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.000 -10.706 2.118 14.145 hybrid contribution 0.870 -1.455 -0.803 1.876 sum 9.870 -12.160 1.315 15.717 Atomic orbital electron populations 1.70768 1.06857 1.30488 1.46651 1.25918 0.96426 1.02675 0.93653 0.83383 0.74579 0.74393 0.76853 1.21306 1.21271 1.20832 1.21901 0.95311 0.90433 1.55637 0.92235 1.20259 0.89446 0.85065 0.94048 1.87886 1.34694 1.12759 1.95083 1.22294 0.94476 0.85379 0.99398 1.22374 0.96282 0.98261 0.90392 1.63664 1.24702 1.01839 1.34622 1.22943 0.91236 0.92509 1.00065 1.23494 0.99062 0.95993 1.01873 1.23094 0.93386 0.90632 0.90822 0.92087 1.86478 1.29587 1.58281 1.62396 1.22722 0.89403 0.93859 1.01939 0.92246 0.98684 0.98970 0.93525 0.94170 0.90198 0.94143 0.92470 0.88651 0.90016 0.90838 0.77564 0.89674 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.06 13.65 55.43 0.76 -27.31 16 2 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 3 Si 1.08 25.49 29.90 -169.99 -5.08 20.40 16 4 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.59 -17.57 9.43 -34.44 -0.32 -17.90 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 5.08 5.00 36.00 0.18 5.26 16 10 O -0.38 -9.12 7.67 -35.23 -0.27 -9.39 16 11 C 0.06 1.18 6.23 37.16 0.23 1.41 16 12 C 0.06 0.86 5.13 -3.82 -0.02 0.84 16 13 N -0.52 -8.35 5.16 -231.26 -1.19 -9.54 16 14 C 0.06 1.00 5.07 -2.30 -0.01 0.99 16 15 C -0.17 -2.20 6.80 -24.59 -0.17 -2.37 16 16 C 0.08 0.98 4.32 -24.91 -0.11 0.87 16 17 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 18 O -0.56 -6.40 13.39 -35.23 -0.47 -6.88 16 19 C 0.05 0.65 6.64 -2.84 -0.02 0.63 16 20 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16 21 H 0.00 -0.13 8.01 -51.93 -0.42 -0.54 16 22 H -0.01 -0.21 8.01 -51.93 -0.42 -0.62 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.08 1.03 8.03 -51.92 -0.42 0.61 16 26 H 0.04 0.63 7.85 -51.93 -0.41 0.22 16 27 H 0.06 1.03 7.21 -51.93 -0.37 0.66 16 28 H 0.10 1.89 7.60 -51.93 -0.39 1.50 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.38 2.61 9.12 45.56 0.42 3.03 16 32 H 0.09 1.17 8.06 -51.93 -0.42 0.75 16 33 H 0.06 0.68 7.55 -51.93 -0.39 0.29 16 LS Contribution 272.36 15.07 4.10 4.10 Total: -1.00 -32.54 272.36 -6.93 -39.47 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -4.43 Total: -0.98 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -0.34 Total: -9.88 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.44 Total: -36.85 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.74 Total: -16.27 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.54 -6.93 -39.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378806450.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.338 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds