Wall clock time and date at job start Mon Mar 30 2020 17:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.47015 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99854 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46612 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47445 * 64.99870 * 12 11 10 14 14 C 1.47840 * 110.99868 * 290.84104 * 13 12 11 15 15 C 1.54906 * 104.79510 * 213.63472 * 14 13 12 16 16 C 1.55140 * 101.65583 * 37.07019 * 15 14 13 17 17 H 1.09002 * 110.70158 * 82.72684 * 16 15 14 18 18 O 1.42894 * 110.70857 * 205.96407 * 16 15 14 19 19 C 1.47436 * 111.00111 * 169.99704 * 13 12 11 20 20 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 22 22 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 23 23 H 1.08999 * 109.47060 * 299.99513 * 11 10 9 24 24 H 1.09000 * 109.47460 * 60.00053 * 11 10 9 25 25 H 1.09007 * 109.46768 * 185.00050 * 12 11 10 26 26 H 1.09003 * 109.47269 * 304.99460 * 12 11 10 27 27 H 1.08993 * 110.37744 * 332.46842 * 14 13 12 28 28 H 1.09006 * 110.37485 * 94.80799 * 14 13 12 29 29 H 1.09001 * 110.99431 * 278.97871 * 15 14 13 30 30 H 1.08997 * 111.02272 * 155.17871 * 15 14 13 31 31 H 0.96702 * 114.00041 * 293.60090 * 18 16 15 32 32 H 1.09002 * 109.89337 * 242.66096 * 19 13 12 33 33 H 1.08998 * 109.89164 * 3.85561 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 2.1798 -3.5853 0.0015 11 6 1.5652 -4.8754 0.0019 12 6 2.6482 -5.9561 0.0023 13 7 3.4084 -5.8873 1.2574 14 6 4.2294 -4.6591 1.3128 15 6 5.5036 -5.0699 2.0920 16 6 5.7337 -6.5151 1.5769 17 1 6.2613 -6.5047 0.6231 18 8 6.4486 -7.2880 2.5430 19 6 4.2984 -7.0539 1.4007 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6248 -2.5563 0.8920 22 1 0.6242 -2.5575 -0.8880 23 1 0.9455 -4.9823 0.8922 24 1 0.9446 -4.9826 -0.8877 25 1 2.1822 -6.9375 -0.0869 26 1 3.3217 -5.7959 -0.8397 27 1 4.4893 -4.3306 0.3066 28 1 3.6971 -3.8704 1.8447 29 1 5.3233 -5.0627 3.1670 30 1 6.3441 -4.4253 1.8349 31 1 7.3567 -6.9904 2.6910 32 1 4.0104 -7.6347 2.2770 33 1 4.2427 -7.6749 0.5067 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378806450.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:11:07 Heat of formation + Delta-G solvation = -126.031866 kcal Electronic energy + Delta-G solvation = -14747.862359 eV Core-core repulsion = 12193.221047 eV Total energy + Delta-G solvation = -2554.641313 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.41343 -38.66015 -36.89587 -35.22301 -32.81582 -30.06741 -28.98375 -27.96116 -24.77864 -23.58539 -22.17958 -21.65368 -19.17640 -18.63577 -17.56998 -17.43006 -16.34092 -15.85538 -15.63172 -15.29859 -14.98134 -14.87969 -14.58233 -14.01503 -13.82644 -13.21180 -12.93001 -12.76410 -12.71681 -12.48526 -12.27548 -11.93338 -11.87156 -11.63642 -10.94784 -10.84057 -10.83637 -10.33070 -9.35808 -8.83579 -6.54406 1.51580 1.61375 1.80846 2.48751 2.84132 3.03506 3.05644 3.22779 3.63711 3.73511 4.05372 4.09636 4.23958 4.32636 4.41472 4.51355 4.58557 4.59480 4.65354 4.79974 4.86679 4.91315 4.95617 5.13217 5.19176 5.67317 5.91308 5.93394 6.05819 6.32920 6.65091 6.83268 7.26746 8.57454 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.041490 B = 0.006515 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.701306 B = 4296.876185 C = 4858.112252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.030 4.030 3 Si 1.130 2.870 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.277 1.277 7 C -0.618 4.618 8 H 0.054 0.946 9 C 0.197 3.803 10 O -0.392 6.392 11 C 0.053 3.947 12 C 0.063 3.937 13 N -0.540 5.540 14 C 0.062 3.938 15 C -0.157 4.157 16 C 0.091 3.909 17 H 0.079 0.921 18 O -0.572 6.572 19 C 0.046 3.954 20 H 0.255 0.745 21 H -0.023 1.023 22 H -0.020 1.020 23 H 0.040 0.960 24 H 0.052 0.948 25 H 0.115 0.885 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.398 0.602 32 H 0.081 0.919 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.647 -12.718 1.441 17.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.227 4.227 3 Si 0.949 3.051 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.202 1.202 7 C -0.656 4.656 8 H 0.073 0.927 9 C 0.122 3.878 10 O -0.312 6.312 11 C -0.024 4.024 12 C -0.065 4.065 13 N -0.266 5.266 14 C -0.066 4.066 15 C -0.196 4.196 16 C 0.031 3.969 17 H 0.097 0.903 18 O -0.380 6.380 19 C -0.081 4.081 20 H 0.064 0.936 21 H -0.006 1.006 22 H -0.002 1.002 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.133 0.867 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.248 0.752 32 H 0.099 0.901 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.726 -11.412 1.864 15.772 hybrid contribution 0.315 -1.368 -0.691 1.564 sum 11.041 -12.780 1.174 16.929 Atomic orbital electron populations 1.70899 1.07817 1.29809 1.48124 1.27602 0.96451 1.06629 0.92053 0.82800 0.74023 0.70134 0.78185 1.19234 1.19385 1.20186 1.22245 0.95324 0.91889 1.56099 0.92728 1.19918 0.89342 0.86087 0.92470 1.87872 1.34342 1.13904 1.95062 1.22629 0.96104 0.84066 0.99645 1.22374 0.95420 0.98276 0.90428 1.63544 1.25670 1.02421 1.34932 1.22729 0.92617 0.92176 0.99078 1.23438 0.97703 0.97482 1.00959 1.22947 0.93054 0.89235 0.91636 0.90325 1.86438 1.31228 1.58144 1.62173 1.22764 0.89785 0.92811 1.02751 0.93582 1.00560 1.00227 0.94183 0.92964 0.86742 0.93795 0.94052 0.92825 0.90612 0.89153 0.75196 0.90076 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.03 13.65 21.45 0.29 -57.74 16 2 C -0.03 -1.77 5.46 84.65 0.46 -1.31 16 3 Si 1.13 50.53 29.90 68.60 2.05 52.58 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.62 -37.23 9.43 25.60 0.24 -36.99 16 8 H 0.05 3.27 7.81 -2.91 -0.02 3.25 16 9 C 0.20 11.13 5.00 71.23 0.36 11.48 16 10 O -0.39 -19.07 7.67 -148.98 -1.14 -20.21 16 11 C 0.05 1.99 6.23 71.98 0.45 2.44 16 12 C 0.06 1.86 5.13 86.30 0.44 2.30 16 13 N -0.54 -16.72 5.16 -885.56 -4.57 -21.29 16 14 C 0.06 2.08 5.07 86.77 0.44 2.52 16 15 C -0.16 -3.97 6.80 31.98 0.22 -3.75 16 16 C 0.09 1.97 4.32 31.78 0.14 2.11 16 17 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 18 O -0.57 -11.30 13.39 -148.98 -1.99 -13.30 16 19 C 0.05 1.13 6.64 86.65 0.58 1.70 16 20 H 0.26 16.12 7.22 -92.71 -0.67 15.45 16 21 H -0.02 -1.37 8.01 -2.39 -0.02 -1.39 16 22 H -0.02 -1.15 8.01 -2.39 -0.02 -1.17 16 23 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.11 2.60 8.03 -2.38 -0.02 2.59 16 26 H 0.04 1.28 7.85 -2.39 -0.02 1.26 16 27 H 0.04 1.50 7.21 -2.39 -0.02 1.48 16 28 H 0.05 2.23 7.60 -2.38 -0.02 2.21 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.40 4.21 9.12 -74.06 -0.68 3.53 16 32 H 0.08 2.06 8.06 -2.39 -0.02 2.04 16 33 H 0.08 1.58 7.55 -2.39 -0.02 1.56 16 Total: -1.00 -70.60 272.36 -1.53 -72.13 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 0.51 Total: 7.31 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 3.32 Total: -19.49 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -4.28 Total: -79.03 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -3.14 Total: -33.51 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.58 kcal Total: -70.60 -1.53 -72.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378806450.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.898 kcal (2) G-P(sol) polarization free energy of solvation -70.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds