Wall clock time and date at job start Mon Mar 30 2020 17:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81399 * 102.99949 * 2 1 4 4 C 1.52997 * 109.47031 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.42259 * 302.68612 * 4 3 2 6 6 C 1.54916 * 110.37265 * 180.37398 * 4 3 2 7 7 C 1.55398 * 101.74107 * 204.18989 * 6 4 3 8 8 C 1.54322 * 102.90031 * 35.47831 * 7 6 4 9 9 N 1.47439 * 107.36952 * 337.89642 * 8 7 6 10 10 C 1.46904 * 111.00045 * 236.65966 * 9 8 7 11 11 C 1.50700 * 109.47037 * 290.12992 * 10 9 8 12 12 H 1.08008 * 120.00176 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00408 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99475 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00187 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47233 * 89.99748 * 15 13 11 17 17 H 1.48503 * 109.47084 * 209.99292 * 15 13 11 18 18 H 1.48503 * 109.47393 * 329.99585 * 15 13 11 19 19 H 1.09002 * 109.47051 * 60.00348 * 1 2 3 20 20 H 1.09002 * 109.47156 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47374 * 300.00350 * 1 2 3 22 22 H 1.08998 * 109.47081 * 59.99794 * 3 2 1 23 23 H 1.09003 * 109.47316 * 300.00144 * 3 2 1 24 24 H 1.08995 * 110.98807 * 322.18869 * 6 4 3 25 25 H 1.08997 * 110.99076 * 85.97341 * 6 4 3 26 26 H 1.09005 * 110.67856 * 277.17709 * 7 6 4 27 27 H 1.08997 * 110.84583 * 153.86033 * 7 6 4 28 28 H 1.09002 * 109.89036 * 218.40745 * 8 7 6 29 29 H 1.09003 * 109.88743 * 97.38054 * 8 7 6 30 30 H 1.09004 * 109.46973 * 50.12514 * 10 9 8 31 31 H 1.08996 * 109.47528 * 170.13051 * 10 9 8 32 32 H 0.97000 * 120.00024 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.1820 1.4347 0.8606 6 6 4.1145 3.4437 0.0101 7 6 5.5375 3.4212 -0.6139 8 6 5.4380 2.2890 -1.6579 9 7 4.3203 1.4159 -1.2551 10 6 4.7706 0.0275 -1.0882 11 6 5.1064 -0.5571 -2.4360 12 1 4.9959 0.0426 -3.3275 13 6 5.5536 -1.8579 -2.5313 14 7 5.6876 -2.5882 -1.4458 15 14 5.9691 -2.5827 -4.2019 16 1 7.4000 -2.3306 -4.5089 17 1 5.7174 -4.0461 -4.1831 18 1 5.1204 -1.9478 -5.2420 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8031 2.2371 0.8899 23 1 1.8031 2.2372 -0.8900 24 1 3.4277 4.0198 -0.6099 25 1 4.1392 3.8334 1.0278 26 1 6.2857 3.1834 0.1423 27 1 5.7644 4.3717 -1.0966 28 1 6.3666 1.7184 -1.6757 29 1 5.2428 2.7102 -2.6441 30 1 5.6557 0.0066 -0.4524 31 1 3.9768 -0.5588 -0.6255 32 1 6.0026 -3.5032 -1.5127 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379311870.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:11:12 Heat of formation + Delta-G solvation = -3.223583 kcal Electronic energy + Delta-G solvation = -12906.841142 eV Core-core repulsion = 10800.278067 eV Total energy + Delta-G solvation = -2106.563075 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.35363 -33.02239 -30.99475 -30.76208 -28.52975 -26.19824 -25.15318 -22.25784 -20.45171 -19.35492 -16.10865 -15.83507 -15.39344 -14.90897 -14.17478 -13.73969 -13.49831 -12.99648 -12.70616 -12.56800 -12.23918 -11.97629 -11.69507 -11.66052 -10.90411 -10.64648 -10.58419 -10.46068 -10.29960 -10.10571 -9.68990 -9.38154 -8.84197 -8.27833 -7.19034 -6.93682 -5.90225 -3.89581 2.24259 3.20273 3.38628 3.44543 3.49564 4.51435 4.83478 5.09261 5.17627 5.43307 5.45061 5.49184 5.50638 5.64989 5.69504 5.88266 5.98095 6.01655 6.07515 6.13569 6.26824 6.52846 6.69560 6.76359 7.38423 7.43675 7.93558 8.23427 8.31575 8.64997 9.16880 9.72543 11.20627 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.023838 B = 0.011287 C = 0.008309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.334466 B = 2480.062716 C = 3369.145889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.209 6.209 3 C -0.069 4.069 4 C 0.082 3.918 5 H 0.054 0.946 6 C -0.118 4.118 7 C -0.142 4.142 8 C 0.053 3.947 9 N -0.519 5.519 10 C 0.187 3.813 11 C -0.498 4.498 12 H 0.060 0.940 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.894 3.106 16 H -0.283 1.283 17 H -0.288 1.288 18 H -0.274 1.274 19 H 0.069 0.931 20 H 0.093 0.907 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.062 0.938 30 H -0.013 1.013 31 H 0.054 0.946 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.859 9.858 3.758 12.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.017 5.983 3 C -0.218 4.218 4 C -0.028 4.028 5 H 0.072 0.928 6 C -0.157 4.157 7 C -0.181 4.181 8 C -0.076 4.076 9 N -0.244 5.244 10 C 0.061 3.939 11 C -0.537 4.537 12 H 0.078 0.922 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.722 3.278 16 H -0.210 1.210 17 H -0.214 1.214 18 H -0.198 1.198 19 H 0.088 0.912 20 H 0.111 0.889 21 H 0.082 0.918 22 H 0.088 0.912 23 H 0.100 0.900 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.004 0.996 31 H 0.072 0.928 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.553 8.763 3.423 10.924 hybrid contribution -0.009 0.437 -0.241 0.499 sum -5.562 9.199 3.182 11.211 Atomic orbital electron populations 1.23488 0.98951 1.05575 1.03542 1.88033 1.02616 1.09886 1.97723 1.23371 0.99638 0.95414 1.03392 1.22224 0.92072 0.94272 0.94238 0.92763 1.22730 0.97043 0.95689 1.00279 1.22872 0.96522 0.99613 0.99097 1.22642 0.94695 0.92896 0.97323 1.63580 1.29414 1.04779 1.26653 1.20098 0.94313 0.82388 0.97104 1.21106 1.42455 0.97078 0.93028 0.92151 1.24953 0.96076 0.97063 0.96481 1.69968 1.47320 1.08963 1.27494 0.86558 0.78430 0.78207 0.84565 1.20955 1.21351 1.19841 0.91224 0.88860 0.91825 0.91208 0.90029 0.91052 0.91657 0.92006 0.91553 0.92177 0.91942 0.99559 0.92815 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 10.76 101.05 1.09 -0.99 16 2 S -0.21 -4.02 19.46 -107.50 -2.09 -6.11 16 3 C -0.07 -1.14 5.65 37.16 0.21 -0.93 16 4 C 0.08 1.50 2.59 -66.18 -0.17 1.33 16 5 H 0.05 1.07 7.81 -51.93 -0.41 0.67 16 6 C -0.12 -1.70 6.50 -24.45 -0.16 -1.86 16 7 C -0.14 -2.17 6.97 -24.77 -0.17 -2.34 16 8 C 0.05 1.03 6.38 -2.84 -0.02 1.01 16 9 N -0.52 -11.42 4.71 -224.81 -1.06 -12.48 16 10 C 0.19 4.98 4.10 -4.97 -0.02 4.96 16 11 C -0.50 -14.39 8.66 -34.44 -0.30 -14.69 16 12 H 0.06 1.74 7.78 -52.48 -0.41 1.33 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 15 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 19 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 20 H 0.09 1.24 8.14 -51.92 -0.42 0.82 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 23 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 24 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 1.30 7.31 -51.93 -0.38 0.92 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H -0.01 -0.38 7.96 -51.93 -0.41 -0.80 16 31 H 0.05 1.52 5.24 -47.47 -0.25 1.27 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 271.13 15.07 4.09 4.09 Total: -1.00 -30.96 271.13 -8.20 -39.17 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -5.21 Total: -3.26 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 0.36 Total: -12.00 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: -0.32 Total: -39.13 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: -4.02 SS G_CDS: -2.09 Total: -6.11 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.96 -8.20 -39.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379311870.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.942 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds