Wall clock time and date at job start Mon Mar 30 2020 17:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81399 * 102.99949 * 2 1 4 4 C 1.52997 * 109.47031 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.42259 * 302.68612 * 4 3 2 6 6 C 1.54916 * 110.37265 * 180.37398 * 4 3 2 7 7 C 1.55398 * 101.74107 * 204.18989 * 6 4 3 8 8 C 1.54322 * 102.90031 * 35.47831 * 7 6 4 9 9 N 1.47439 * 107.36952 * 337.89642 * 8 7 6 10 10 C 1.46904 * 111.00045 * 236.65966 * 9 8 7 11 11 C 1.50700 * 109.47037 * 290.12992 * 10 9 8 12 12 H 1.08008 * 120.00176 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00408 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99475 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00187 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47233 * 89.99748 * 15 13 11 17 17 H 1.48503 * 109.47084 * 209.99292 * 15 13 11 18 18 H 1.48503 * 109.47393 * 329.99585 * 15 13 11 19 19 H 1.09002 * 109.47051 * 60.00348 * 1 2 3 20 20 H 1.09002 * 109.47156 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47374 * 300.00350 * 1 2 3 22 22 H 1.08998 * 109.47081 * 59.99794 * 3 2 1 23 23 H 1.09003 * 109.47316 * 300.00144 * 3 2 1 24 24 H 1.08995 * 110.98807 * 322.18869 * 6 4 3 25 25 H 1.08997 * 110.99076 * 85.97341 * 6 4 3 26 26 H 1.09005 * 110.67856 * 277.17709 * 7 6 4 27 27 H 1.08997 * 110.84583 * 153.86033 * 7 6 4 28 28 H 1.09002 * 109.89036 * 218.40745 * 8 7 6 29 29 H 1.09003 * 109.88743 * 97.38054 * 8 7 6 30 30 H 1.09004 * 109.46973 * 50.12514 * 10 9 8 31 31 H 1.08996 * 109.47528 * 170.13051 * 10 9 8 32 32 H 0.97000 * 120.00024 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.1820 1.4347 0.8606 6 6 4.1145 3.4437 0.0101 7 6 5.5375 3.4212 -0.6139 8 6 5.4380 2.2890 -1.6579 9 7 4.3203 1.4159 -1.2551 10 6 4.7706 0.0275 -1.0882 11 6 5.1064 -0.5571 -2.4360 12 1 4.9959 0.0426 -3.3275 13 6 5.5536 -1.8579 -2.5313 14 7 5.6876 -2.5882 -1.4458 15 14 5.9691 -2.5827 -4.2019 16 1 7.4000 -2.3306 -4.5089 17 1 5.7174 -4.0461 -4.1831 18 1 5.1204 -1.9478 -5.2420 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8031 2.2371 0.8899 23 1 1.8031 2.2372 -0.8900 24 1 3.4277 4.0198 -0.6099 25 1 4.1392 3.8334 1.0278 26 1 6.2857 3.1834 0.1423 27 1 5.7644 4.3717 -1.0966 28 1 6.3666 1.7184 -1.6757 29 1 5.2428 2.7102 -2.6441 30 1 5.6557 0.0066 -0.4524 31 1 3.9768 -0.5588 -0.6255 32 1 6.0026 -3.5032 -1.5127 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379311870.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:11:11 Heat of formation + Delta-G solvation = -23.806895 kcal Electronic energy + Delta-G solvation = -12907.733701 eV Core-core repulsion = 10800.278067 eV Total energy + Delta-G solvation = -2107.455634 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.88115 -35.12462 -32.62250 -32.30727 -29.69071 -28.20694 -26.58191 -24.21536 -21.85212 -20.93072 -18.29148 -17.37944 -16.97391 -16.56908 -15.98595 -15.09595 -14.82108 -14.53151 -14.14550 -14.03366 -13.75729 -13.49292 -13.44426 -13.24249 -12.79934 -12.45652 -12.20048 -11.91610 -11.84492 -11.56604 -11.46564 -11.30957 -10.66760 -10.29667 -8.97426 -8.44375 -8.14211 -6.22453 0.93416 1.39073 1.41429 1.52805 1.92483 2.42638 3.18155 3.32434 3.78507 3.86649 4.17321 4.26907 4.31510 4.41175 4.42889 4.52008 4.75246 4.76955 4.91412 4.92930 5.01972 5.08805 5.14931 5.31540 5.39412 5.48823 5.70979 6.16006 6.43625 6.66887 6.92875 7.45153 8.96661 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.023838 B = 0.011287 C = 0.008309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.334466 B = 2480.062716 C = 3369.145889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.323 6.323 3 C -0.044 4.044 4 C 0.073 3.927 5 H 0.030 0.970 6 C -0.103 4.103 7 C -0.132 4.132 8 C 0.046 3.954 9 N -0.528 5.528 10 C 0.202 3.798 11 C -0.514 4.514 12 H 0.055 0.945 13 C 0.000 4.000 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.266 1.266 19 H 0.080 0.920 20 H 0.098 0.902 21 H 0.090 0.910 22 H 0.105 0.895 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.026 0.974 29 H 0.068 0.932 30 H -0.055 1.055 31 H 0.039 0.961 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.052 11.876 3.321 14.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.097 6.097 3 C -0.193 4.193 4 C -0.037 4.037 5 H 0.048 0.952 6 C -0.142 4.142 7 C -0.171 4.171 8 C -0.082 4.082 9 N -0.253 5.253 10 C 0.076 3.924 11 C -0.552 4.552 12 H 0.073 0.927 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.790 3.210 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.190 1.190 19 H 0.099 0.901 20 H 0.116 0.884 21 H 0.108 0.892 22 H 0.123 0.877 23 H 0.106 0.894 24 H 0.110 0.890 25 H 0.114 0.886 26 H 0.078 0.922 27 H 0.118 0.882 28 H 0.044 0.956 29 H 0.087 0.913 30 H -0.037 1.037 31 H 0.057 0.943 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.746 10.810 2.986 13.088 hybrid contribution 0.301 -0.157 -0.066 0.346 sum -6.445 10.653 2.920 12.788 Atomic orbital electron populations 1.23415 0.93216 1.06553 1.05372 1.88399 1.08898 1.14387 1.98036 1.23319 0.98262 0.92395 1.05280 1.22410 0.92986 0.96728 0.91571 0.95164 1.22735 0.96367 0.92590 1.02525 1.22824 0.97365 0.99062 0.97825 1.22694 0.92481 0.93740 0.99327 1.63498 1.29940 1.02929 1.28911 1.19725 0.92109 0.85382 0.95206 1.21413 1.42546 0.97535 0.93733 0.92657 1.25866 0.95818 0.97488 1.00540 1.70107 1.48195 1.09320 1.29894 0.85451 0.78586 0.77354 0.79634 1.19865 1.20768 1.19040 0.90077 0.88368 0.89158 0.87658 0.89395 0.89034 0.88554 0.92186 0.88220 0.95567 0.91329 1.03732 0.94320 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.07 10.76 113.37 1.22 -1.85 16 2 S -0.32 -12.51 19.46 -56.49 -1.10 -13.61 16 3 C -0.04 -1.38 5.65 71.98 0.41 -0.97 16 4 C 0.07 2.60 2.59 45.39 0.12 2.71 16 5 H 0.03 1.22 7.81 -2.39 -0.02 1.20 16 6 C -0.10 -2.61 6.50 32.07 0.21 -2.40 16 7 C -0.13 -3.73 6.97 31.87 0.22 -3.50 16 8 C 0.05 1.79 6.38 86.65 0.55 2.35 16 9 N -0.53 -23.61 4.71 -865.15 -4.07 -27.69 16 10 C 0.20 11.38 4.10 85.56 0.35 11.73 16 11 C -0.51 -30.77 8.66 25.60 0.22 -30.54 16 12 H 0.06 3.28 7.78 -2.91 -0.02 3.25 16 13 C 0.00 0.02 5.46 84.65 0.46 0.48 16 14 N -0.93 -59.05 13.29 21.45 0.28 -58.76 16 15 Si 0.96 46.51 29.54 68.60 2.03 48.53 16 16 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 20 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 21 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 23 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 24 H 0.09 2.02 8.06 -2.39 -0.02 2.00 16 25 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.03 1.18 7.31 -2.39 -0.02 1.16 16 29 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 30 H -0.05 -3.43 7.96 -2.39 -0.02 -3.45 16 31 H 0.04 2.33 5.24 -5.23 -0.03 2.30 16 32 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -70.73 271.13 1.95 -68.78 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 1.05 Total: 4.75 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 3.76 Total: -22.00 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -3.79 Total: -86.45 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Atomic # 16 Polarization: -12.51 SS G_CDS: -1.10 Total: -13.61 kcal Total: -70.73 1.95 -68.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379311870.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.971 kcal (2) G-P(sol) polarization free energy of solvation -70.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds