Wall clock time and date at job start Mon Mar 30 2020 17:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34229 * 117.00200 * 2 1 4 4 O 1.20828 * 119.99716 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00154 * 179.97438 * 3 2 1 6 6 N 1.46498 * 110.45420 * 327.60090 * 5 3 2 7 7 C 1.36938 * 120.00198 * 57.39535 * 6 5 3 8 8 H 1.08000 * 119.99833 * 0.02562 * 7 6 5 9 9 C 1.38815 * 120.00168 * 179.97438 * 7 6 5 10 10 N 1.31618 * 119.99768 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99843 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.46815 * 90.00057 * 11 9 7 13 13 H 1.48503 * 109.47093 * 209.99708 * 11 9 7 14 14 H 1.48497 * 109.47268 * 330.00030 * 11 9 7 15 15 C 1.54510 * 110.50940 * 204.99981 * 5 3 2 16 16 C 1.54477 * 104.18108 * 241.28242 * 15 5 3 17 17 O 1.44642 * 104.69773 * 336.19290 * 16 15 5 18 18 C 1.44415 * 105.37338 * 40.34325 * 17 16 15 19 19 H 1.08995 * 109.46713 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47100 * 300.00613 * 1 2 3 21 21 H 1.09001 * 109.46750 * 60.00332 * 1 2 3 22 22 H 0.97004 * 119.99950 * 237.39629 * 6 5 3 23 23 H 0.97009 * 119.99597 * 179.97438 * 10 9 7 24 24 H 1.09002 * 110.51305 * 359.97438 * 15 5 3 25 25 H 1.08994 * 110.51141 * 122.57102 * 15 5 3 26 26 H 1.09006 * 110.37498 * 94.92285 * 16 15 5 27 27 H 1.09000 * 110.37254 * 217.25804 * 16 15 5 28 28 H 1.08998 * 110.37627 * 200.73568 * 18 17 16 29 29 H 1.09003 * 110.37369 * 78.39849 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.1380 0.1444 0.7365 7 6 3.8454 -1.1383 0.3566 8 1 3.1936 -1.3165 -0.4859 9 6 4.3875 -2.2094 1.0536 10 7 4.1066 -3.4422 0.6880 11 14 5.5155 -1.9011 2.5103 12 1 4.7075 -1.8215 3.7537 13 1 6.4918 -3.0142 2.6247 14 1 6.2437 -0.6224 2.3105 15 6 4.0381 2.6131 0.6121 16 6 4.8102 3.3020 -0.5349 17 8 5.2296 2.2191 -1.3972 18 6 4.1071 1.3118 -1.4460 19 1 -0.3632 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 4.7238 0.3045 1.4930 23 1 4.4858 -4.1907 1.1749 24 1 3.1828 3.2178 0.9136 25 1 4.6966 2.4336 1.4619 26 1 4.1558 3.9854 -1.0760 27 1 5.6762 3.8352 -0.1427 28 1 4.4348 0.3189 -1.7541 29 1 3.3438 1.6886 -2.1268 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379369578.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:11:19 Heat of formation + Delta-G solvation = -127.669068 kcal Electronic energy + Delta-G solvation = -15338.008953 eV Core-core repulsion = 12647.463551 eV Total energy + Delta-G solvation = -2690.545402 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.86017 -39.92913 -37.37676 -36.48276 -33.78927 -31.60693 -29.91369 -28.44168 -25.75518 -24.16784 -23.51562 -20.95517 -19.80076 -18.83178 -17.79539 -17.36924 -17.10527 -16.46859 -16.20496 -15.86589 -15.07296 -14.76348 -14.24637 -14.09716 -14.00457 -13.14210 -13.01224 -12.90824 -12.66817 -12.32552 -12.21195 -11.98916 -11.80714 -11.68627 -11.61019 -11.03274 -10.74485 -9.44449 -7.98368 -5.36059 1.14150 1.40964 1.42516 1.49664 1.89861 2.50510 3.00365 3.22161 3.39912 3.45305 3.85716 3.95452 4.19339 4.26402 4.29945 4.34613 4.48046 4.68723 4.75334 4.82766 4.90459 4.96789 5.46819 5.74186 5.83259 6.22135 6.78085 7.06192 7.71751 7.90790 9.21025 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.024999 B = 0.014298 C = 0.010650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.789692 B = 1957.905521 C = 2628.401763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.340 6.340 3 C 0.461 3.539 4 O -0.540 6.540 5 C 0.173 3.827 6 N -0.721 5.721 7 C -0.220 4.220 8 H 0.079 0.921 9 C -0.051 4.051 10 N -0.972 5.972 11 Si 0.941 3.059 12 H -0.282 1.282 13 H -0.297 1.297 14 H -0.249 1.249 15 C -0.147 4.147 16 C 0.047 3.953 17 O -0.382 6.382 18 C 0.051 3.949 19 H 0.111 0.889 20 H 0.061 0.939 21 H 0.067 0.933 22 H 0.374 0.626 23 H 0.258 0.742 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.843 12.263 -0.174 12.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.254 6.254 3 C 0.303 3.697 4 O -0.431 6.431 5 C 0.079 3.921 6 N -0.364 5.364 7 C -0.350 4.350 8 H 0.097 0.903 9 C -0.243 4.243 10 N -0.621 5.621 11 Si 0.768 3.232 12 H -0.208 1.208 13 H -0.224 1.224 14 H -0.174 1.174 15 C -0.185 4.185 16 C -0.029 4.029 17 O -0.301 6.301 18 C -0.028 4.028 19 H 0.129 0.871 20 H 0.080 0.920 21 H 0.086 0.914 22 H 0.210 0.790 23 H 0.067 0.933 24 H 0.120 0.880 25 H 0.114 0.886 26 H 0.096 0.904 27 H 0.140 0.860 28 H 0.111 0.889 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.947 12.310 -0.380 12.469 hybrid contribution 0.012 -0.497 1.003 1.119 sum -1.934 11.813 0.622 11.987 Atomic orbital electron populations 1.23479 0.76909 1.04618 1.02251 1.87020 1.23520 1.32681 1.82147 1.25181 0.93035 0.81100 0.70388 1.90530 1.67544 1.36863 1.48149 1.21099 0.85118 0.90517 0.95363 1.42828 1.56326 1.01438 1.35841 1.19017 1.22277 0.81592 1.12116 0.90273 1.25371 1.02157 0.94788 1.02002 1.69858 1.49911 0.98322 1.44008 0.85635 0.79255 0.77995 0.80280 1.20794 1.22376 1.17383 1.23236 1.02233 0.92698 1.00342 1.23666 1.00237 0.89696 0.89333 1.89145 1.36893 1.34848 1.69168 1.23738 0.89283 0.95256 0.94504 0.87081 0.92040 0.91423 0.79011 0.93345 0.87997 0.88561 0.90436 0.85970 0.88892 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 10.56 113.37 1.20 1.86 15 2 O -0.34 -14.28 7.79 -51.40 -0.40 -14.68 15 3 C 0.46 18.34 6.77 71.23 0.48 18.82 15 4 O -0.54 -21.07 15.38 21.96 0.34 -20.74 15 5 C 0.17 6.59 1.12 3.87 0.00 6.60 15 6 N -0.72 -32.20 5.00 -302.13 -1.51 -33.71 15 7 C -0.22 -11.76 8.18 84.03 0.69 -11.07 15 8 H 0.08 4.63 6.86 -2.91 -0.02 4.61 15 9 C -0.05 -2.88 5.50 84.86 0.47 -2.41 15 10 N -0.97 -59.90 13.97 21.65 0.30 -59.60 15 11 Si 0.94 43.57 27.74 68.60 1.90 45.48 15 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 13 H -0.30 -14.10 7.11 99.48 0.71 -13.39 15 14 H -0.25 -10.35 6.52 99.48 0.65 -9.71 15 15 C -0.15 -4.33 6.38 31.61 0.20 -4.13 15 16 C 0.05 1.20 7.65 72.48 0.55 1.76 15 17 O -0.38 -12.98 11.65 -148.98 -1.74 -14.72 15 18 C 0.05 1.89 6.80 72.48 0.49 2.38 15 19 H 0.11 3.12 8.14 -2.39 -0.02 3.10 15 20 H 0.06 1.82 8.13 -2.39 -0.02 1.80 15 21 H 0.07 1.91 8.13 -2.39 -0.02 1.89 15 22 H 0.37 15.93 5.19 -92.71 -0.48 15.45 15 23 H 0.26 15.23 8.31 -92.70 -0.77 14.46 15 24 H 0.10 2.87 6.82 -2.39 -0.02 2.85 15 25 H 0.10 2.61 7.52 -2.39 -0.02 2.59 15 26 H 0.08 1.74 8.14 -2.38 -0.02 1.72 15 27 H 0.12 2.40 8.14 -2.39 -0.02 2.38 15 28 H 0.09 3.85 7.38 -2.39 -0.02 3.84 15 29 H 0.07 2.19 7.86 -2.39 -0.02 2.18 15 Total: -1.00 -66.15 245.86 3.61 -62.55 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.62 Total: 21.62 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 4.09 Total: 13.81 kcal Atomic # 7 Polarization: -92.10 SS G_CDS: -1.21 Total: -93.31 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -1.80 Total: -50.14 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.90 Total: 45.48 kcal Total: -66.15 3.61 -62.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379369578.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.123 kcal (2) G-P(sol) polarization free energy of solvation -66.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds