Wall clock time and date at job start Mon Mar 30 2020 17:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00470 * 2 1 4 4 H 1.48504 * 109.47310 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46968 * 300.00345 * 3 2 1 6 6 H 1.48507 * 109.46612 * 60.00278 * 3 2 1 7 7 C 1.37882 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00112 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00032 * 359.97438 * 7 2 1 10 10 H 1.09009 * 109.47246 * 300.00109 * 9 7 2 11 11 O 1.42896 * 109.47094 * 59.99831 * 9 7 2 12 12 C 1.52998 * 109.47222 * 180.02562 * 9 7 2 13 13 N 1.46901 * 109.47350 * 172.80741 * 12 9 7 14 14 C 1.47848 * 111.00018 * 56.52231 * 13 12 9 15 15 C 1.54906 * 104.79470 * 146.36800 * 14 13 12 16 16 C 1.55394 * 101.74125 * 323.01937 * 15 14 13 17 17 C 1.47440 * 111.00300 * 177.36633 * 13 12 9 18 18 H 1.09008 * 109.88678 * 117.17103 * 17 13 12 19 19 C 1.52995 * 109.88581 * 356.15111 * 17 13 12 20 20 O 1.42897 * 109.47280 * 292.51309 * 19 17 13 21 21 H 0.97008 * 119.99366 * 359.97438 * 1 2 3 22 22 H 0.96704 * 114.00005 * 60.00812 * 11 9 7 23 23 H 1.09003 * 109.47398 * 52.80719 * 12 9 7 24 24 H 1.09003 * 109.47508 * 292.80524 * 12 9 7 25 25 H 1.08997 * 110.37330 * 265.19519 * 14 13 12 26 26 H 1.09002 * 110.37333 * 27.53658 * 14 13 12 27 27 H 1.08996 * 110.99550 * 81.02202 * 15 14 13 28 28 H 1.08998 * 110.99011 * 204.80086 * 15 14 13 29 29 H 1.09006 * 110.68287 * 277.17454 * 16 15 14 30 30 H 1.09006 * 110.84707 * 153.86437 * 16 15 14 31 31 H 1.08997 * 109.47494 * 52.51751 * 19 17 13 32 32 H 1.09005 * 109.46953 * 172.51922 * 19 17 13 33 33 H 0.96695 * 114.00546 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 8 0.4289 -2.5745 -1.1670 12 6 2.2451 -3.6621 -0.0005 13 7 1.5189 -4.9272 0.1729 14 6 0.4895 -5.0952 -0.8750 15 6 0.4413 -6.6204 -1.1413 16 6 1.9388 -7.0126 -1.0054 17 6 2.4397 -6.0773 0.1151 18 1 2.4340 -6.6051 1.0689 19 6 3.8560 -5.5946 -0.2039 20 8 3.8955 -5.0818 -1.5371 21 1 -0.4849 0.8402 0.0004 22 1 0.9208 -2.5291 -1.9984 23 1 2.9535 -3.5347 0.8181 24 1 2.7840 -3.6795 -0.9479 25 1 -0.4774 -4.7417 -0.5172 26 1 0.7786 -4.5609 -1.7801 27 1 -0.1630 -7.1291 -0.3902 28 1 0.0711 -6.8301 -2.1448 29 1 2.4732 -6.8200 -1.9358 30 1 2.0411 -8.0570 -0.7102 31 1 4.1382 -4.8084 0.4963 32 1 4.5527 -6.4281 -0.1145 33 1 4.7651 -4.7575 -1.8082 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379371769.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:11:21 Heat of formation + Delta-G solvation = -88.071119 kcal Electronic energy + Delta-G solvation = -15560.931482 eV Core-core repulsion = 13007.936271 eV Total energy + Delta-G solvation = -2552.995211 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.33589 -36.01720 -35.24024 -32.06661 -31.38385 -29.69492 -27.58444 -24.53491 -24.25795 -21.24716 -20.38109 -18.99035 -17.47143 -16.82105 -15.40849 -15.12423 -14.63987 -14.51762 -14.03884 -13.59623 -13.15207 -12.68105 -12.48960 -12.22165 -11.70231 -11.41373 -11.06730 -10.93847 -10.77850 -10.54731 -10.44283 -10.37481 -10.27386 -9.91550 -9.55509 -8.83276 -8.50704 -7.89700 -7.42357 -5.93931 -4.11162 3.29526 3.37478 3.40405 4.38212 4.43971 4.67305 5.12141 5.16876 5.29570 5.33063 5.48904 5.61309 5.72486 5.92129 6.05561 6.15824 6.24483 6.32941 6.45511 6.60963 6.67956 6.79707 6.89518 7.10662 7.70007 7.77084 7.81067 7.84716 8.09498 8.31675 8.92608 9.47182 9.66189 11.10337 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.045086 B = 0.008869 C = 0.007900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.890006 B = 3156.322664 C = 3543.464364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.078 3.922 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.567 4.567 8 H 0.053 0.947 9 C 0.231 3.769 10 H 0.058 0.942 11 O -0.562 6.562 12 C 0.010 3.990 13 N -0.523 5.523 14 C 0.065 3.935 15 C -0.137 4.137 16 C -0.133 4.133 17 C 0.068 3.932 18 H 0.085 0.915 19 C 0.058 3.942 20 O -0.559 6.559 21 H 0.258 0.742 22 H 0.340 0.660 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.231 -11.383 -2.122 13.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.128 4.128 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.606 4.606 8 H 0.071 0.929 9 C 0.174 3.826 10 H 0.076 0.924 11 O -0.364 6.364 12 C -0.118 4.118 13 N -0.247 5.247 14 C -0.063 4.063 15 C -0.175 4.175 16 C -0.171 4.171 17 C -0.040 4.040 18 H 0.103 0.897 19 C -0.020 4.020 20 O -0.365 6.365 21 H 0.068 0.932 22 H 0.184 0.816 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 4.715 -11.461 -1.133 12.444 hybrid contribution 2.049 1.162 -0.968 2.547 sum 6.764 -10.299 -2.101 12.499 Atomic orbital electron populations 1.70100 1.05870 1.26089 1.47417 1.25037 0.94675 0.99004 0.94045 0.86649 0.80165 0.84096 0.77616 1.19838 1.20977 1.20944 1.21661 0.93039 0.91625 1.54229 0.92866 1.19372 0.88207 0.89093 0.85971 0.92430 1.86617 1.38612 1.95967 1.15234 1.23493 0.97853 0.89720 1.00698 1.63816 1.12372 1.01589 1.46926 1.22977 0.96461 0.92619 0.94227 1.22845 0.95755 0.98033 1.00839 1.22767 0.96673 0.98144 0.99521 1.22605 0.90159 0.93240 0.98032 0.89679 1.22700 0.97829 0.97124 0.84390 1.86586 1.36011 1.82935 1.30943 0.93178 0.81635 0.92365 0.91907 0.90370 0.92487 0.91742 0.91717 0.90540 0.92166 0.92419 0.94315 0.78155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.90 12.84 55.43 0.71 -25.19 16 2 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.57 -15.87 8.75 -34.44 -0.30 -16.17 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.23 6.04 2.84 -27.89 -0.08 5.96 16 10 H 0.06 1.71 8.14 -51.92 -0.42 1.29 16 11 O -0.56 -14.59 9.67 -35.23 -0.34 -14.93 16 12 C 0.01 0.21 3.45 -3.82 -0.01 0.19 16 13 N -0.52 -10.18 5.26 -223.35 -1.17 -11.35 16 14 C 0.06 1.23 4.95 -2.30 -0.01 1.22 16 15 C -0.14 -2.07 7.08 -24.45 -0.17 -2.25 16 16 C -0.13 -1.89 6.38 -24.77 -0.16 -2.05 16 17 C 0.07 1.08 3.84 -66.73 -0.26 0.82 16 18 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16 19 C 0.06 0.81 6.01 37.15 0.22 1.04 16 20 O -0.56 -8.11 9.75 -35.23 -0.34 -8.46 16 21 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 22 H 0.34 8.10 8.59 45.56 0.39 8.49 16 23 H 0.06 1.25 6.74 -51.93 -0.35 0.90 16 24 H 0.06 1.33 5.16 -51.93 -0.27 1.07 16 25 H 0.08 1.65 7.86 -51.93 -0.41 1.24 16 26 H 0.06 1.16 6.16 -51.93 -0.32 0.84 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.14 6.86 -51.93 -0.36 0.78 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.86 6.18 -51.93 -0.32 0.54 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.37 3.82 9.12 45.56 0.42 4.23 16 LS Contribution 258.65 15.07 3.90 3.90 Total: -1.00 -31.58 258.65 -6.43 -38.01 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -3.29 Total: 10.68 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -0.87 Total: -9.10 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.46 Total: -36.55 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.68 Total: -23.38 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.58 -6.43 -38.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379371769.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.064 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds