Wall clock time and date at job start Mon Mar 30 2020 17:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00470 * 2 1 4 4 H 1.48504 * 109.47310 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46968 * 300.00345 * 3 2 1 6 6 H 1.48507 * 109.46612 * 60.00278 * 3 2 1 7 7 C 1.37882 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00112 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00032 * 359.97438 * 7 2 1 10 10 H 1.09009 * 109.47246 * 300.00109 * 9 7 2 11 11 O 1.42896 * 109.47094 * 59.99831 * 9 7 2 12 12 C 1.52998 * 109.47222 * 180.02562 * 9 7 2 13 13 N 1.46901 * 109.47350 * 172.80741 * 12 9 7 14 14 C 1.47848 * 111.00018 * 56.52231 * 13 12 9 15 15 C 1.54906 * 104.79470 * 146.36800 * 14 13 12 16 16 C 1.55394 * 101.74125 * 323.01937 * 15 14 13 17 17 C 1.47440 * 111.00300 * 177.36633 * 13 12 9 18 18 H 1.09008 * 109.88678 * 117.17103 * 17 13 12 19 19 C 1.52995 * 109.88581 * 356.15111 * 17 13 12 20 20 O 1.42897 * 109.47280 * 292.51309 * 19 17 13 21 21 H 0.97008 * 119.99366 * 359.97438 * 1 2 3 22 22 H 0.96704 * 114.00005 * 60.00812 * 11 9 7 23 23 H 1.09003 * 109.47398 * 52.80719 * 12 9 7 24 24 H 1.09003 * 109.47508 * 292.80524 * 12 9 7 25 25 H 1.08997 * 110.37330 * 265.19519 * 14 13 12 26 26 H 1.09002 * 110.37333 * 27.53658 * 14 13 12 27 27 H 1.08996 * 110.99550 * 81.02202 * 15 14 13 28 28 H 1.08998 * 110.99011 * 204.80086 * 15 14 13 29 29 H 1.09006 * 110.68287 * 277.17454 * 16 15 14 30 30 H 1.09006 * 110.84707 * 153.86437 * 16 15 14 31 31 H 1.08997 * 109.47494 * 52.51751 * 19 17 13 32 32 H 1.09005 * 109.46953 * 172.51922 * 19 17 13 33 33 H 0.96695 * 114.00546 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 8 0.4289 -2.5745 -1.1670 12 6 2.2451 -3.6621 -0.0005 13 7 1.5189 -4.9272 0.1729 14 6 0.4895 -5.0952 -0.8750 15 6 0.4413 -6.6204 -1.1413 16 6 1.9388 -7.0126 -1.0054 17 6 2.4397 -6.0773 0.1151 18 1 2.4340 -6.6051 1.0689 19 6 3.8560 -5.5946 -0.2039 20 8 3.8955 -5.0818 -1.5371 21 1 -0.4849 0.8402 0.0004 22 1 0.9208 -2.5291 -1.9984 23 1 2.9535 -3.5347 0.8181 24 1 2.7840 -3.6795 -0.9479 25 1 -0.4774 -4.7417 -0.5172 26 1 0.7786 -4.5609 -1.7801 27 1 -0.1630 -7.1291 -0.3902 28 1 0.0711 -6.8301 -2.1448 29 1 2.4732 -6.8200 -1.9358 30 1 2.0411 -8.0570 -0.7102 31 1 4.1382 -4.8084 0.4963 32 1 4.5527 -6.4281 -0.1145 33 1 4.7651 -4.7575 -1.8082 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379371769.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:11:21 Heat of formation + Delta-G solvation = -115.148389 kcal Electronic energy + Delta-G solvation = -15562.105641 eV Core-core repulsion = 13007.936271 eV Total energy + Delta-G solvation = -2554.169370 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.72066 -37.62049 -36.76493 -34.25002 -32.93884 -30.98133 -29.50218 -26.23722 -25.68973 -23.02584 -21.79536 -20.45688 -18.96268 -18.52604 -16.85787 -16.63372 -16.57416 -16.14010 -15.81384 -15.13782 -14.56161 -14.35352 -14.08646 -13.62363 -13.27085 -12.94662 -12.89558 -12.83142 -12.62685 -12.13909 -11.96130 -11.74462 -11.59507 -11.43993 -10.93045 -10.78722 -10.69896 -9.91613 -8.92792 -8.11822 -6.37560 1.39466 1.39864 1.52560 2.38971 3.13656 3.21921 3.42269 3.92293 3.93938 4.07947 4.24492 4.40190 4.48647 4.58303 4.68286 4.73093 4.83283 4.89185 5.02291 5.12822 5.23085 5.27088 5.34411 5.51113 5.64082 5.78582 6.05808 6.33624 6.41432 6.76336 6.90576 7.33960 7.55406 8.93030 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.045086 B = 0.008869 C = 0.007900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.890006 B = 3156.322664 C = 3543.464364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.963 3.037 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.581 4.581 8 H 0.059 0.941 9 C 0.232 3.768 10 H 0.010 0.990 11 O -0.571 6.571 12 C 0.033 3.967 13 N -0.541 5.541 14 C 0.065 3.935 15 C -0.128 4.128 16 C -0.121 4.121 17 C 0.058 3.942 18 H 0.099 0.901 19 C 0.061 3.939 20 O -0.578 6.578 21 H 0.260 0.740 22 H 0.348 0.652 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.063 -12.376 -2.545 14.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.180 4.180 3 Si 0.787 3.213 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.619 4.619 8 H 0.077 0.923 9 C 0.174 3.826 10 H 0.028 0.972 11 O -0.375 6.375 12 C -0.095 4.095 13 N -0.266 5.266 14 C -0.063 4.063 15 C -0.166 4.166 16 C -0.160 4.160 17 C -0.050 4.050 18 H 0.117 0.883 19 C -0.017 4.017 20 O -0.386 6.386 21 H 0.069 0.931 22 H 0.193 0.807 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 6.577 -12.470 -1.561 14.184 hybrid contribution 1.450 1.422 -0.827 2.192 sum 8.027 -11.048 -2.388 13.864 Atomic orbital electron populations 1.70251 1.07758 1.27157 1.48713 1.25954 0.95512 1.03047 0.93491 0.85470 0.79165 0.79016 0.77641 1.18527 1.20480 1.20582 1.22037 0.93443 0.92670 1.53797 0.92274 1.19193 0.88024 0.90989 0.84352 0.97209 1.86572 1.39135 1.96140 1.15653 1.23081 0.96236 0.89210 1.00936 1.63683 1.13476 1.02082 1.47369 1.22810 0.94791 0.95554 0.93100 1.22800 0.97182 0.94655 1.02012 1.22717 0.95154 0.99384 0.98710 1.22807 0.90524 0.92072 0.99549 0.88335 1.22629 0.97259 0.97918 0.83901 1.86510 1.37920 1.83157 1.31048 0.93118 0.80696 0.92592 0.91207 0.93764 0.94168 0.90858 0.90196 0.90919 0.89117 0.93675 0.90845 0.76021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.67 12.84 21.45 0.28 -55.40 16 2 C 0.02 1.26 5.40 84.66 0.46 1.71 16 3 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.58 -32.94 8.75 25.60 0.22 -32.71 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.23 12.54 2.84 29.85 0.08 12.63 16 10 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 11 O -0.57 -30.79 9.67 -148.98 -1.44 -32.23 16 12 C 0.03 1.43 3.45 86.30 0.30 1.72 16 13 N -0.54 -21.01 5.26 -860.55 -4.53 -25.54 16 14 C 0.07 2.51 4.95 86.77 0.43 2.94 16 15 C -0.13 -3.66 7.08 32.07 0.23 -3.44 16 16 C -0.12 -3.07 6.38 31.86 0.20 -2.86 16 17 C 0.06 1.70 3.84 45.26 0.17 1.88 16 18 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 19 C 0.06 1.55 6.01 71.98 0.43 1.98 16 20 O -0.58 -15.41 9.75 -148.98 -1.45 -16.86 16 21 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 22 H 0.35 17.10 8.59 -74.05 -0.64 16.46 16 23 H 0.06 2.41 6.74 -2.39 -0.02 2.39 16 24 H 0.07 2.93 5.16 -2.39 -0.01 2.92 16 25 H 0.04 1.96 7.86 -2.39 -0.02 1.94 16 26 H 0.04 1.66 6.16 -2.39 -0.01 1.64 16 27 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.07 1.93 6.86 -2.38 -0.02 1.91 16 30 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.05 1.25 6.18 -2.39 -0.01 1.24 16 32 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.39 7.03 9.12 -74.06 -0.68 6.35 16 Total: -1.00 -68.90 258.65 -2.78 -71.68 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -0.19 Total: 28.25 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 2.53 Total: -16.15 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -4.25 Total: -80.94 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -2.89 Total: -49.09 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -68.90 -2.78 -71.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379371769.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.464 kcal (2) G-P(sol) polarization free energy of solvation -68.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds