Wall clock time and date at job start Mon Mar 30 2020 17:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31446 * 1 3 3 Si 1.86794 * 119.99888 * 2 1 4 4 H 1.48498 * 109.47332 * 269.99459 * 3 2 1 5 5 H 1.48497 * 109.47592 * 30.00170 * 3 2 1 6 6 H 1.48507 * 109.46906 * 149.99885 * 3 2 1 7 7 C 1.38756 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00128 * 0.02562 * 7 2 1 9 9 O 1.34923 * 119.99899 * 179.97438 * 7 2 1 10 10 C 1.34306 * 116.99932 * 179.97438 * 9 7 2 11 11 O 1.21212 * 120.00469 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99840 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47109 * 180.02562 * 12 10 9 14 14 C 1.47013 * 110.99679 * 293.63802 * 13 12 10 15 15 C 1.53102 * 109.25585 * 177.61181 * 14 13 12 16 16 O 1.43011 * 109.26258 * 56.84351 * 15 14 13 17 17 C 1.43017 * 113.73722 * 301.33198 * 16 15 14 18 18 C 1.47013 * 110.99743 * 169.99988 * 13 12 10 19 19 H 0.97000 * 119.99448 * 359.97438 * 1 2 3 20 20 H 1.08992 * 109.46894 * 60.00097 * 12 10 9 21 21 H 1.09004 * 109.47113 * 300.00247 * 12 10 9 22 22 H 1.09000 * 109.50252 * 297.53423 * 14 13 12 23 23 H 1.08997 * 109.51401 * 57.66777 * 14 13 12 24 24 H 1.09007 * 109.50232 * 296.90658 * 15 14 13 25 25 H 1.09004 * 109.54160 * 176.80211 * 15 14 13 26 26 H 1.08998 * 109.50896 * 298.73695 * 17 16 15 27 27 H 1.08997 * 109.54338 * 178.62778 * 17 16 15 28 28 H 1.09001 * 109.50643 * 302.31994 * 18 13 12 29 29 H 1.08994 * 109.50970 * 62.41449 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4960 2.0464 -1.4000 5 1 1.4459 2.6527 0.7000 6 1 3.5460 1.4401 0.7001 7 6 2.0082 -1.2017 0.0005 8 1 1.4682 -2.1370 0.0005 9 8 3.3574 -1.2017 0.0000 10 6 3.9671 -2.3984 0.0011 11 8 3.3070 -3.4150 0.0020 12 6 5.4721 -2.4773 0.0012 13 7 5.8886 -3.8860 0.0019 14 6 5.5102 -4.5466 1.2595 15 6 5.9086 -6.0235 1.1939 16 8 7.3107 -6.1227 0.9307 17 6 7.7141 -5.4904 -0.2870 18 6 7.3342 -4.0081 -0.2363 19 1 -0.4849 0.8401 0.0004 20 1 5.8617 -1.9824 0.8907 21 1 5.8618 -1.9839 -0.8892 22 1 6.0257 -4.0674 2.0918 23 1 4.4327 -4.4663 1.4031 24 1 5.3527 -6.5152 0.3955 25 1 5.6818 -6.5049 2.1452 26 1 7.2108 -5.9665 -1.1284 27 1 8.7932 -5.5856 -0.4072 28 1 7.5880 -3.5347 -1.1848 29 1 7.8788 -3.5195 0.5716 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379386021.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:11:26 Heat of formation + Delta-G solvation = -109.374817 kcal Electronic energy + Delta-G solvation = -14656.954466 eV Core-core repulsion = 11967.202363 eV Total energy + Delta-G solvation = -2689.752103 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.77597 -38.80047 -36.00667 -34.73245 -32.30130 -31.10105 -29.29136 -25.99273 -24.23607 -23.94239 -20.50757 -19.80211 -17.96914 -16.83691 -16.33910 -16.02420 -15.41625 -15.13288 -14.97546 -14.38684 -14.17315 -13.80050 -13.29444 -12.54184 -12.35324 -12.10183 -11.82035 -11.49174 -11.31362 -11.04133 -10.59402 -10.43213 -10.28582 -9.75659 -9.69894 -9.05394 -8.67801 -8.25394 -6.36527 -4.12341 3.13696 3.22156 3.33910 3.40689 3.57557 3.88646 4.23996 4.36826 4.89683 5.04764 5.08791 5.15386 5.19223 5.33489 5.54244 5.57956 5.63209 5.69411 5.77589 6.02754 6.09836 6.27361 6.97478 7.02711 7.17672 7.74722 8.04699 8.64498 9.02044 9.69845 10.72134 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.065489 B = 0.006921 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.450734 B = 4044.574631 C = 4323.767412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.380 4.380 8 H 0.109 0.891 9 O -0.256 6.256 10 C 0.411 3.589 11 O -0.523 6.523 12 C 0.072 3.928 13 N -0.521 5.521 14 C 0.011 3.989 15 C 0.067 3.933 16 O -0.391 6.391 17 C 0.066 3.934 18 C 0.018 3.982 19 H 0.279 0.721 20 H 0.065 0.935 21 H 0.105 0.895 22 H 0.037 0.963 23 H 0.110 0.890 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.751 -5.491 0.696 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.456 4.456 8 H 0.127 0.873 9 O -0.164 6.164 10 C 0.255 3.745 11 O -0.416 6.416 12 C -0.057 4.057 13 N -0.247 5.247 14 C -0.117 4.117 15 C -0.010 4.010 16 O -0.310 6.310 17 C -0.011 4.011 18 C -0.110 4.110 19 H 0.089 0.911 20 H 0.083 0.917 21 H 0.123 0.877 22 H 0.055 0.945 23 H 0.128 0.872 24 H 0.080 0.920 25 H 0.115 0.885 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 14.252 -5.946 0.440 15.448 hybrid contribution 0.370 1.426 0.414 1.530 sum 14.622 -4.520 0.854 15.328 Atomic orbital electron populations 1.69611 1.05688 1.28342 1.47914 1.24540 0.95001 0.98632 0.95660 0.86213 0.80212 0.81564 0.78883 1.19874 1.20797 1.18536 1.20625 0.76098 0.96941 1.51948 0.87329 1.83504 1.24023 1.31344 1.77559 1.22719 0.90171 0.82751 0.78844 1.90560 1.66620 1.36061 1.48404 1.21363 0.91470 0.89419 1.03420 1.61768 1.13887 1.13484 1.35594 1.22998 1.04199 0.95012 0.89442 1.22667 0.81262 0.95249 1.01802 1.87934 1.24628 1.77081 1.41343 1.22620 0.99974 0.91033 0.87498 1.22805 0.88046 0.98232 1.01901 0.91071 0.91744 0.87661 0.94523 0.87172 0.91960 0.88522 0.92186 0.88609 0.89503 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.06 13.96 55.48 0.77 -25.29 15 2 C 0.07 1.87 5.49 -17.53 -0.10 1.77 15 3 Si 0.91 21.41 28.62 -169.99 -4.86 16.54 15 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 6 H -0.26 -6.02 7.11 56.52 0.40 -5.62 15 7 C -0.38 -11.34 10.10 30.92 0.31 -11.03 15 8 H 0.11 3.57 7.09 -52.49 -0.37 3.20 15 9 O -0.26 -6.74 8.58 -20.70 -0.18 -6.92 15 10 C 0.41 9.60 7.61 36.01 0.27 9.88 15 11 O -0.52 -13.67 13.59 -19.05 -0.26 -13.93 15 12 C 0.07 1.23 5.56 -4.97 -0.03 1.20 15 13 N -0.52 -8.37 4.46 -235.74 -1.05 -9.42 15 14 C 0.01 0.18 5.29 -3.71 -0.02 0.16 15 15 C 0.07 0.91 7.01 37.21 0.26 1.18 15 16 O -0.39 -5.35 10.83 -35.23 -0.38 -5.73 15 17 C 0.07 0.75 7.01 37.21 0.26 1.01 15 18 C 0.02 0.22 5.65 -3.71 -0.02 0.20 15 19 H 0.28 7.58 8.31 -40.82 -0.34 7.24 15 20 H 0.06 1.00 8.12 -51.93 -0.42 0.57 15 21 H 0.11 1.55 8.04 -51.93 -0.42 1.14 15 22 H 0.04 0.55 8.14 -51.93 -0.42 0.13 15 23 H 0.11 2.06 5.88 -51.93 -0.31 1.75 15 24 H 0.06 0.88 8.14 -51.92 -0.42 0.45 15 25 H 0.10 1.12 8.14 -51.93 -0.42 0.70 15 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 27 H 0.10 0.83 8.14 -51.93 -0.42 0.41 15 28 H 0.09 0.90 8.09 -51.93 -0.42 0.48 15 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 15 LS Contribution 249.44 15.07 3.76 3.76 Total: -1.00 -32.91 249.44 -4.86 -37.77 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -3.61 Total: -1.16 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 0.94 Total: 4.37 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: -0.28 Total: -34.71 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.82 Total: -26.58 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.86 Total: 16.54 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.91 -4.86 -37.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379386021.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.602 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds