Wall clock time and date at job start Mon Mar 30 2020 17:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 119.99861 * 2 1 4 4 H 1.48503 * 109.47301 * 270.00016 * 3 2 1 5 5 H 1.48497 * 109.47262 * 30.00121 * 3 2 1 6 6 H 1.48503 * 109.47320 * 150.00075 * 3 2 1 7 7 C 1.37873 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00253 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00218 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47164 * 300.00602 * 9 7 2 11 11 O 1.42900 * 109.47003 * 60.00163 * 9 7 2 12 12 C 1.52997 * 109.47395 * 180.02562 * 9 7 2 13 13 N 1.46896 * 109.47261 * 180.02562 * 12 9 7 14 14 C 1.48529 * 111.00073 * 52.60606 * 13 12 9 15 15 C 1.54943 * 103.23110 * 159.72217 * 14 13 12 16 16 C 1.54593 * 102.91873 * 322.58517 * 15 14 13 17 17 H 1.09001 * 110.39100 * 262.99893 * 16 15 14 18 18 C 1.53004 * 110.31247 * 140.87180 * 16 15 14 19 19 O 1.42903 * 109.46640 * 69.27935 * 18 16 15 20 20 C 1.47906 * 111.00163 * 169.99916 * 13 12 9 21 21 H 0.96998 * 120.00516 * 0.02562 * 1 2 3 22 22 H 0.96703 * 114.00083 * 60.00097 * 11 9 7 23 23 H 1.09002 * 109.47127 * 60.00008 * 12 9 7 24 24 H 1.09006 * 109.46990 * 300.00294 * 12 9 7 25 25 H 1.08995 * 110.67216 * 41.28703 * 14 13 12 26 26 H 1.09004 * 110.80922 * 278.21881 * 14 13 12 27 27 H 1.08999 * 110.72722 * 204.22642 * 15 14 13 28 28 H 1.09004 * 110.87493 * 81.01227 * 15 14 13 29 29 H 1.08994 * 109.47158 * 189.27923 * 18 16 15 30 30 H 1.09000 * 109.46488 * 309.28353 * 18 16 15 31 31 H 0.96699 * 113.99432 * 179.97438 * 19 18 16 32 32 H 1.08998 * 109.91583 * 94.80499 * 20 13 12 33 33 H 1.09004 * 109.91554 * 333.51082 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1670 12 6 2.2453 -3.6620 -0.0005 13 7 1.5108 -4.9342 -0.0012 14 6 0.5158 -4.9738 -1.1032 15 6 0.2441 -6.4888 -1.2813 16 6 1.6372 -7.1190 -1.0529 17 1 2.1304 -7.3062 -2.0068 18 6 1.5078 -8.4202 -0.2586 19 8 0.8790 -9.4136 -1.0710 20 6 2.4235 -6.0731 -0.2410 21 1 -0.4851 0.8400 -0.0004 22 1 0.9209 -2.5291 -1.9984 23 1 2.8719 -3.6043 0.8895 24 1 2.8720 -3.6042 -0.8905 25 1 0.9344 -4.5483 -2.0151 26 1 -0.3972 -4.4501 -0.8196 27 1 -0.1146 -6.7006 -2.2886 28 1 -0.4676 -6.8460 -0.5369 29 1 2.4984 -8.7659 0.0364 30 1 0.9043 -8.2437 0.6318 31 1 0.7644 -10.2669 -0.6307 32 1 2.7396 -6.5022 0.7098 33 1 3.2926 -5.7394 -0.8080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379386713.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:11:28 Heat of formation + Delta-G solvation = -98.453735 kcal Electronic energy + Delta-G solvation = -14964.473285 eV Core-core repulsion = 12411.027850 eV Total energy + Delta-G solvation = -2553.445435 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.98316 -36.79361 -35.30202 -32.17884 -31.78100 -29.13092 -27.88679 -25.17770 -23.70014 -21.29215 -20.07656 -19.85543 -17.36917 -17.00640 -15.58332 -15.21682 -14.60765 -14.47460 -14.11123 -14.00070 -13.56743 -12.77535 -12.55594 -12.03057 -11.82399 -11.59668 -11.19077 -10.98194 -10.90441 -10.77751 -10.56678 -10.37386 -10.28315 -10.02314 -9.81396 -8.96996 -8.57839 -7.98500 -7.75774 -6.00181 -4.18423 3.27729 3.34913 3.37589 4.15598 4.37199 4.68217 4.89480 4.98627 5.25687 5.26969 5.48225 5.57745 5.72142 5.77668 5.89893 6.05728 6.13368 6.23175 6.30532 6.37833 6.44384 6.63782 6.79150 7.00181 7.53992 7.56738 7.60346 7.77247 7.93994 8.20864 8.84505 9.36104 9.57990 11.04025 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.082801 B = 0.006194 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.080903 B = 4519.664718 C = 4725.023036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.573 4.573 8 H 0.054 0.946 9 C 0.231 3.769 10 H 0.063 0.937 11 O -0.560 6.560 12 C 0.023 3.977 13 N -0.517 5.517 14 C 0.054 3.946 15 C -0.120 4.120 16 C -0.100 4.100 17 H 0.075 0.925 18 C 0.087 3.913 19 O -0.575 6.575 20 C 0.040 3.960 21 H 0.260 0.740 22 H 0.340 0.660 23 H 0.068 0.932 24 H 0.023 0.977 25 H 0.041 0.959 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.375 0.625 32 H 0.071 0.929 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.125 -13.574 -1.246 13.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.611 4.611 8 H 0.073 0.927 9 C 0.174 3.826 10 H 0.081 0.919 11 O -0.363 6.363 12 C -0.105 4.105 13 N -0.241 5.241 14 C -0.073 4.073 15 C -0.158 4.158 16 C -0.119 4.119 17 H 0.093 0.907 18 C 0.009 3.991 19 O -0.379 6.379 20 C -0.088 4.088 21 H 0.070 0.930 22 H 0.184 0.816 23 H 0.086 0.914 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.119 0.881 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.221 0.779 32 H 0.089 0.911 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.235 -13.040 -0.690 13.248 hybrid contribution 1.589 0.666 -0.671 1.850 sum 3.825 -12.374 -1.361 13.023 Atomic orbital electron populations 1.70074 1.05912 1.26419 1.46990 1.25018 0.94683 0.99078 0.93826 0.86670 0.79977 0.83542 0.78152 1.20595 1.21090 1.19854 1.21613 0.93121 0.91524 1.54844 0.92738 1.19374 0.88107 0.88868 0.86268 0.91918 1.86656 1.38613 1.95741 1.15290 1.23185 0.97510 0.90285 0.99565 1.64832 1.13192 1.02508 1.43571 1.23337 0.97875 0.93399 0.92696 1.22659 0.95480 0.96397 1.01285 1.21990 0.97874 0.93164 0.98836 0.90679 1.22296 0.95676 0.88132 0.93007 1.86494 1.83076 1.24312 1.44061 1.22845 0.94957 0.92306 0.98712 0.92988 0.81578 0.91360 0.95907 0.94050 0.88079 0.91704 0.91343 0.94061 0.93107 0.77895 0.91111 0.94073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.41 12.84 55.43 0.71 -24.70 16 2 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.57 -15.75 8.76 -34.44 -0.30 -16.05 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.23 5.87 2.91 -27.89 -0.08 5.79 16 10 H 0.06 1.79 8.14 -51.93 -0.42 1.37 16 11 O -0.56 -13.95 8.99 -35.23 -0.32 -14.27 16 12 C 0.02 0.48 4.82 -3.83 -0.02 0.46 16 13 N -0.52 -9.76 5.40 -230.45 -1.24 -11.00 16 14 C 0.05 0.99 4.65 -1.90 -0.01 0.98 16 15 C -0.12 -1.85 6.51 -24.87 -0.16 -2.01 16 16 C -0.10 -1.39 3.26 -89.26 -0.29 -1.69 16 17 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 18 C 0.09 1.02 6.13 37.16 0.23 1.24 16 19 O -0.57 -6.62 13.55 -35.23 -0.48 -7.10 16 20 C 0.04 0.62 6.36 -2.75 -0.02 0.60 16 21 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 22 H 0.34 7.71 8.33 45.56 0.38 8.09 16 23 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 24 H 0.02 0.47 7.81 -51.93 -0.41 0.07 16 25 H 0.04 0.76 6.81 -51.93 -0.35 0.41 16 26 H 0.10 2.10 6.83 -51.93 -0.35 1.75 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.05 7.76 -51.93 -0.40 0.65 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.59 7.99 -51.93 -0.42 0.18 16 31 H 0.37 2.46 9.12 45.56 0.42 2.88 16 32 H 0.07 1.00 7.68 -51.93 -0.40 0.60 16 33 H 0.04 0.63 7.57 -51.93 -0.39 0.24 16 LS Contribution 267.10 15.07 4.03 4.03 Total: -1.00 -30.89 267.10 -6.65 -37.54 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -3.58 Total: 7.85 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -0.75 Total: -8.51 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.53 Total: -35.70 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.79 Total: -21.37 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.89 -6.65 -37.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379386713.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.912 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds